mRNA_D-herbacea_F_contig1123.993.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1123.993.1
Unique NamemRNA_D-herbacea_F_contig1123.993.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1123.993.1 vs. uniprot
Match: D8LK78_ECTSI (Ubiquinol cytochrome c reductase subunit QCR7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK78_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 5.910e-25
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 GLKFDDLMMEENEDVAEAIRRLTPAQRLARRRRQLRAFDISLKKTPLPDHIQAVQEP 171
            GLKFDDLM+EE+ DVAEA+RRLTP Q+LAR+RRQ RAFDISLKKTPLPDHIQAVQ+P
Sbjct:   32 GLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDP 88
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BLAST of mRNA_D-herbacea_F_contig1123.993.1 vs. uniprot
Match: A0A1X6NXZ7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXZ7_PORUM)

HSP 1 Score: 50.8 bits (120), Expect = 1.430e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 GLKFDDLMMEENEDVAEAIRRLTPAQRLARRRRQLRAFDISLKKTPLPDHIQAVQE 168
            GL++DDL+ E + +V + IR + P +   R +R  RA D+ LKKT LPD IQA Q+
Sbjct:   41 GLRYDDLLNEYDPEVRKTIRTMPPEEAELRAKRLTRAIDVDLKKTQLPDPIQAKQD 96
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BLAST of mRNA_D-herbacea_F_contig1123.993.1 vs. uniprot
Match: M2XVT8_GALSU (Ubiquinol-cytochrome c reductase subunit 7 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVT8_GALSU)

HSP 1 Score: 50.4 bits (119), Expect = 1.910e-6
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 GLKFDDLMMEENEDVAEAIRRLTPAQRLARRRRQLRAFDISLKKTPLPDHI 153
            GL++DDL+ E++ DV +AI  L   ++  R +R +RAFD+S+KKT LP+ I
Sbjct:   37 GLRYDDLLNEQDPDVKQAIEMLPEHEKQLRAKRFIRAFDLSMKKTQLPEEI 87
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BLAST of mRNA_D-herbacea_F_contig1123.993.1 vs. uniprot
Match: A0A2V3J0E6_9FLOR (Cytochrome b-c1 complex subunit 7-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E6_9FLOR)

HSP 1 Score: 48.5 bits (114), Expect = 1.050e-5
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 GLKFDDLMMEENEDVAEAIRRLTPAQRLARRRRQLRAFDISLKKTPLPDHIQAVQE 168
            GL++DDL+ E +++V  AI +L+P +   R +R  RA D+ +KKT LP+ IQA ++
Sbjct:   36 GLRYDDLLNEYDDEVKHAISKLSPQELELRNKRLKRAIDLDVKKTYLPEDIQAQED 91
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1123.993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LK78_ECTSI5.910e-2584.21Ubiquinol cytochrome c reductase subunit QCR7 n=2 ... [more]
A0A1X6NXZ7_PORUM1.430e-646.43Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2XVT8_GALSU1.910e-647.06Ubiquinol-cytochrome c reductase subunit 7 n=1 Tax... [more]
A0A2V3J0E6_9FLOR1.050e-542.86Cytochrome b-c1 complex subunit 7-1 n=1 Tax=Gracil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1123contigD-herbacea_F_contig1123:68224..68394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.2630527-UTR-D-herbacea_F_contig1123:68223..682441622927529.2630527-UTR-D-herbacea_F_contig1123:68223..68244Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1123 68224..68244 +
1690790217.5414526-UTR-D-herbacea_F_contig1123:68223..682441690790217.5414526-UTR-D-herbacea_F_contig1123:68223..68244Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1123 68224..68244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.277367-CDS-D-herbacea_F_contig1123:68244..683941622927529.277367-CDS-D-herbacea_F_contig1123:68244..68394Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1123 68245..68394 +
1690790217.549269-CDS-D-herbacea_F_contig1123:68244..683941690790217.549269-CDS-D-herbacea_F_contig1123:68244..68394Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1123 68245..68394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1123.993.1prot_D-herbacea_F_contig1123.993.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1123 68245..68394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1123.993.1

>prot_D-herbacea_F_contig1123.993.1 ID=prot_D-herbacea_F_contig1123.993.1|Name=mRNA_D-herbacea_F_contig1123.993.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=50bp
MMEENEDVAEAIRRLTPAQRLARRRRQLRAFDISLKKTPLPDHIQAVQEP
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mRNA from alignment at D-herbacea_F_contig1123:68224..68394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1123.993.1 ID=mRNA_D-herbacea_F_contig1123.993.1|Name=mRNA_D-herbacea_F_contig1123.993.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=171bp|location=Sequence derived from alignment at D-herbacea_F_contig1123:68224..68394+ (Desmarestia herbacea DmunF female)
GGCCTCAAGTTCGACGATCTCATGATGGAGGAAAACGAGGACGTGGCGGA
GGCCATCAGGCGCTTAACGCCGGCCCAGCGGCTTGCTCGCCGGCGCCGCC
AGCTTCGTGCGTTCGACATCTCGCTCAAGAAGACCCCGCTCCCGGACCAC
ATCCAGGCGGTGCAAGAGCCC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1123:68224..68394+

>mRNA_D-herbacea_F_contig1123.993.1 ID=mRNA_D-herbacea_F_contig1123.993.1|Name=mRNA_D-herbacea_F_contig1123.993.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=300bp|location=Sequence derived from alignment at D-herbacea_F_contig1123:68224..68394+ (Desmarestia herbacea DmunF female)
ATGATGGAGGAAAACGAGGACGTGGCGGAGGCCATCAGGCGCTTAACGCC
GGCCCAGCGGCTTGCTCGCCGGCGCCGCCAGCTTCGTGCGTTCGACATCT
CGCTCAAGAAGACCCCGCTCCCGGACCACATCCAGGCGGTGCAAGAGCCC
ATGATGGAGGAAAACGAGGACGTGGCGGAGGCCATCAGGCGCTTAACGCC
GGCCCAGCGGCTTGCTCGCCGGCGCCGCCAGCTTCGTGCGTTCGACATCT
CGCTCAAGAAGACCCCGCTCCCGGACCACATCCAGGCGGTGCAAGAGCCC
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