mRNA_D-herbacea_F_contig112.976.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig112.976.1
Unique NamemRNA_D-herbacea_F_contig112.976.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig112.976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig112contigD-herbacea_F_contig112:187658..188087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.8635209-UTR-D-herbacea_F_contig112:187657..1877691622927526.8635209-UTR-D-herbacea_F_contig112:187657..187769Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig112 187658..187769 +
1690790216.301259-UTR-D-herbacea_F_contig112:187657..1877691690790216.301259-UTR-D-herbacea_F_contig112:187657..187769Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig112 187658..187769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.8738625-CDS-D-herbacea_F_contig112:187769..1880871622927526.8738625-CDS-D-herbacea_F_contig112:187769..188087Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 187770..188087 +
1690790216.3114648-CDS-D-herbacea_F_contig112:187769..1880871690790216.3114648-CDS-D-herbacea_F_contig112:187769..188087Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig112 187770..188087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig112.976.1prot_D-herbacea_F_contig112.976.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig112 187770..188087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig112.976.1

>prot_D-herbacea_F_contig112.976.1 ID=prot_D-herbacea_F_contig112.976.1|Name=mRNA_D-herbacea_F_contig112.976.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=106bp
MPATTTRRPNVPASSTTTEQGDPALTTTPPLVEAASDSAVGDSPDAEPSL
SSSREGVSLESARGEASVVGAAASSSSSVAEGDKDVVGPAVESSAVPGGM
ITMITG
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mRNA from alignment at D-herbacea_F_contig112:187658..188087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig112.976.1 ID=mRNA_D-herbacea_F_contig112.976.1|Name=mRNA_D-herbacea_F_contig112.976.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=430bp|location=Sequence derived from alignment at D-herbacea_F_contig112:187658..188087+ (Desmarestia herbacea DmunF female)
CAGCACACATTTGCCAAAACAAAGGAGAAACACAAAAAAAATCCCAATTA
ACGACCAAAACAAAACTGTCCTCTCGTACTACAATAGTAAAAAAAAATAG
TACTATAAAAACATGCCGGCTACAACGACCAGGAGGCCCAACGTCCCCGC
GAGTTCCACAACGACCGAGCAGGGTGACCCGGCTCTAACGACAACCCCGC
CGCTCGTAGAGGCCGCATCGGACTCCGCGGTAGGAGACTCGCCGGACGCA
GAACCCTCATTGTCCTCTTCCCGTGAAGGGGTCTCGTTAGAGTCGGCGAG
GGGGGAAGCATCGGTAGTAGGAGCGGCGGCGTCGTCGTCGTCGTCGGTAG
CGGAAGGCGACAAGGACGTAGTAGGACCGGCCGTAGAGTCGTCGGCGGTC
CCCGGCGGCATGATCACGATGATAACGGGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig112:187658..188087+

>mRNA_D-herbacea_F_contig112.976.1 ID=mRNA_D-herbacea_F_contig112.976.1|Name=mRNA_D-herbacea_F_contig112.976.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=636bp|location=Sequence derived from alignment at D-herbacea_F_contig112:187658..188087+ (Desmarestia herbacea DmunF female)
ATGCCGGCTACAACGACCAGGAGGCCCAACGTCCCCGCGAGTTCCACAAC
GACCGAGCAGGGTGACCCGGCTCTAACGACAACCCCGCCGCTCGTAGAGG
CCGCATCGGACTCCGCGGTAGGAGACTCGCCGGACGCAGAACCCTCATTG
TCCTCTTCCCGTGAAGGGGTCTCGTTAGAGTCGGCGAGGGGGGAAGCATC
GGTAGTAGGAGCGGCGGCGTCGTCGTCGTCGTCGGTAGCGGAAGGCGACA
AGGACGTAGTAGGACCGGCCGTAGAGTCGTCGGCGGTCCCCGGCGGCATG
ATCACGATGATAACGGGCATGCCGGCTACAACGACCAGGAGGCCCAACGT
CCCCGCGAGTTCCACAACGACCGAGCAGGGTGACCCGGCTCTAACGACAA
CCCCGCCGCTCGTAGAGGCCGCATCGGACTCCGCGGTAGGAGACTCGCCG
GACGCAGAACCCTCATTGTCCTCTTCCCGTGAAGGGGTCTCGTTAGAGTC
GGCGAGGGGGGAAGCATCGGTAGTAGGAGCGGCGGCGTCGTCGTCGTCGT
CGGTAGCGGAAGGCGACAAGGACGTAGTAGGACCGGCCGTAGAGTCGTCG
GCGGTCCCCGGCGGCATGATCACGATGATAACGGGC
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