mRNA_D-herbacea_F_contig111.964.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.964.1
Unique NamemRNA_D-herbacea_F_contig111.964.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A059FW89_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Hyphomonas oceanitis SCH89 TaxID=1280953 RepID=A0A059FW89_9PROT)

HSP 1 Score: 135 bits (340), Expect = 3.020e-39
Identity = 70/103 (67.96%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 LALKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEEM 309
            LAL+ K+EGEEH+E+YG LR  IG+K  LHGP+D+A  LKL+F   VGDL+LPERR R+TSSRE EE +AQ+ P GKA ES  HIVGECE Y EERDVLEEEM
Sbjct:    9 LALRKKVEGEEHLEMYGGLREGIGMKRYLHGPMDFAKKLKLRFR--VGDLDLPERRRRYTSSREEEEVEAQMCPCGKAIESRVHIVGECERYKEERDVLEEEM 109
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BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5J8K3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8K3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.360e-14
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    1 LALKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDV 294
            L L+ + + EE +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LY +ER+V
Sbjct:   29 LDLRKESKDEEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEVLVHVVAECPLYKQEREV 122
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BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5L4I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.450e-13
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDV 294
            L+ + +G+E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LY +ER+V
Sbjct:  611 LRKESKGKEGLEVYGMLKKGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEDRVHVVAECPLYKKEREV 702
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BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5KET1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.470e-13
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEEM 309
            L+ + E +E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LY +ER+V   E+
Sbjct:  173 LRKESEDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTEL 269
[Close]
BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5JSX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.290e-13
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEEM 309
            L+ + + +E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LY EER+V   E+
Sbjct:  675 LRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEDRVHVVAECPLYKEEREVYVTEL 771
[Close]
BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5L448_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L448_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.200e-13
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEEM 309
            L+ + + +E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LYN+ER V   E+
Sbjct:  115 LRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEDRVHVVVECPLYNKERKVYVTEL 211
[Close]
BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5KAK9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.930e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEE 306
            L+ + + +E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    +E+D      G   E   H+V EC LY +ER+V E E
Sbjct:  263 LRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDMGLRERRRRHKTV--DDEDDEFQCDCGFECEDRVHVVAECPLYKKEREVXERE 358
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BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5KMG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 8.940e-13
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEEM 309
            L+ +++ +E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LY +ER+V   E+
Sbjct:  177 LRKQIKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTEL 273
[Close]
BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5K863_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K863_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-12
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEEM 309
            L+ +++ +E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LY +ER+V   E+
Sbjct:   70 LRKEIKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTEL 166
[Close]
BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Match: A0A6H5JT82_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT82_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.860e-12
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    7 LKNKMEGEEHIEIYGTLR*DIGLKS*LHGPLDYATMLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVGECELYNEERDVLEEEM 309
            L+ + + +E +E+YG L+  IG K  LHGP+D  T LK++F    GD+ L ERR RH +    EE+D      G   E   H+V EC LY +ER+V   E+
Sbjct:  221 LRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFR--TGDIGLRERRRRHRTV--DEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTEL 317
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059FW89_9PROT3.020e-3967.96Uncharacterized protein (Fragment) n=1 Tax=Hyphomo... [more]
A0A6H5J8K3_9PHAE2.360e-1442.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L4I6_9PHAE3.450e-1342.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KET1_9PHAE5.470e-1341.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JSX8_9PHAE6.290e-1341.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L448_9PHAE7.200e-1341.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAK9_9PHAE7.930e-1341.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMG6_9PHAE8.940e-1340.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K863_9PHAE1.060e-1240.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JT82_9PHAE1.860e-1240.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:840394..840702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7G873
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG0553@1,COG2940@1,COG5076@1,KOG0383@2759,KOG0384@2759,KOG1075@1,KOG1075@2759,KOG1081@2759,KOG1474@2759
EC2.1.1.43,2.3.1.15,3.6.4.12
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Exons1
Model size309
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.6133559-UTR-D-herbacea_F_contig111:840393..8405041622927525.6133559-UTR-D-herbacea_F_contig111:840393..840504Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 840394..840504 +
1690790215.6930664-UTR-D-herbacea_F_contig111:840393..8405041690790215.6930664-UTR-D-herbacea_F_contig111:840393..840504Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 840394..840504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.6274626-CDS-D-herbacea_F_contig111:840504..8407021622927525.6274626-CDS-D-herbacea_F_contig111:840504..840702Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 840505..840702 +
1690790215.7095532-CDS-D-herbacea_F_contig111:840504..8407021690790215.7095532-CDS-D-herbacea_F_contig111:840504..840702Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 840505..840702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.964.1prot_D-herbacea_F_contig111.964.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 840505..840702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.964.1

>prot_D-herbacea_F_contig111.964.1 ID=prot_D-herbacea_F_contig111.964.1|Name=mRNA_D-herbacea_F_contig111.964.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=66bp
MLKLQFVWGVGDLNLPERRTRHTSSREHEEEDAQLLPSGKAEESGTHIVG
ECELYNEERDVLEEEM
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mRNA from alignment at D-herbacea_F_contig111:840394..840702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.964.1 ID=mRNA_D-herbacea_F_contig111.964.1|Name=mRNA_D-herbacea_F_contig111.964.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=309bp|location=Sequence derived from alignment at D-herbacea_F_contig111:840394..840702+ (Desmarestia herbacea DmunF female)
TTAGCGTTAAAAAACAAGATGGAAGGGGAAGAACATATAGAAATATACGG
GACGTTAAGATAAGATATAGGCTTGAAATCGTAGTTGCACGGCCCATTGG
ACTACGCGACAATGCTGAAACTGCAATTCGTGTGGGGGGTAGGGGACCTG
AACTTGCCAGAAAGAAGAACCAGACATACCAGTAGTCGGGAGCACGAGGA
AGAAGATGCACAGCTGCTCCCTAGTGGCAAGGCCGAAGAGAGTGGAACCC
ACATAGTGGGAGAATGTGAATTGTACAATGAGGAACGAGATGTGTTGGAG
GAGGAGATG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:840394..840702+

>mRNA_D-herbacea_F_contig111.964.1 ID=mRNA_D-herbacea_F_contig111.964.1|Name=mRNA_D-herbacea_F_contig111.964.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=396bp|location=Sequence derived from alignment at D-herbacea_F_contig111:840394..840702+ (Desmarestia herbacea DmunF female)
ATGCTGAAACTGCAATTCGTGTGGGGGGTAGGGGACCTGAACTTGCCAGA
AAGAAGAACCAGACATACCAGTAGTCGGGAGCACGAGGAAGAAGATGCAC
AGCTGCTCCCTAGTGGCAAGGCCGAAGAGAGTGGAACCCACATAGTGGGA
GAATGTGAATTGTACAATGAGGAACGAGATGTGTTGGAGGAGGAGATGAT
GCTGAAACTGCAATTCGTGTGGGGGGTAGGGGACCTGAACTTGCCAGAAA
GAAGAACCAGACATACCAGTAGTCGGGAGCACGAGGAAGAAGATGCACAG
CTGCTCCCTAGTGGCAAGGCCGAAGAGAGTGGAACCCACATAGTGGGAGA
ATGTGAATTGTACAATGAGGAACGAGATGTGTTGGAGGAGGAGATG
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