mRNA_D-herbacea_F_contig111.958.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.958.1
Unique NamemRNA_D-herbacea_F_contig111.958.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:685257..686817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size299
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.7513554-CDS-D-herbacea_F_contig111:685257..6853111622927519.7513554-CDS-D-herbacea_F_contig111:685257..685311Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 685258..685311 -
1690790213.5785248-CDS-D-herbacea_F_contig111:685257..6853111690790213.5785248-CDS-D-herbacea_F_contig111:685257..685311Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 685258..685311 -
1622927519.7686536-CDS-D-herbacea_F_contig111:686574..6868171622927519.7686536-CDS-D-herbacea_F_contig111:686574..686817Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 686575..686817 -
1690790213.586906-CDS-D-herbacea_F_contig111:686574..6868171690790213.586906-CDS-D-herbacea_F_contig111:686574..686817Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 686575..686817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.958.1prot_D-herbacea_F_contig111.958.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 685258..686817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.958.1

>prot_D-herbacea_F_contig111.958.1 ID=prot_D-herbacea_F_contig111.958.1|Name=mRNA_D-herbacea_F_contig111.958.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=99bp
ALIPAAPAVESMELESAENSQVYDDYRDGGDNDDDDDDDGDVIFDVTGGR
AHLHAMAVNAAGSAGGTTAALTETRPWFGQEGGRGRSSRSLRSPPSSRT
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mRNA from alignment at D-herbacea_F_contig111:685257..686817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.958.1 ID=mRNA_D-herbacea_F_contig111.958.1|Name=mRNA_D-herbacea_F_contig111.958.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1561bp|location=Sequence derived from alignment at D-herbacea_F_contig111:685257..686817- (Desmarestia herbacea DmunF female)
GCGCTTATTCCGGCGGCGCCGGCGGTAGAGAGTATGGAGCTGGAATCCGC
TGAGAACAGCCAAGTTTATGACGACTACCGCGATGGTGGTGATAATGACG
ACGATGATGATGATGACGGTGATGTTATTTTTGACGTGACAGGGGGTCGG
GCGCATTTGCACGCCATGGCCGTGAACGCAGCCGGTAGTGCCGGGGGGAC
GACTGCTGCTTTGACCGAGACACGCCCCTGGTTTGGGCAAGAGGTAAGGG
ATGTCTCGCGTTTTGTGCATATGTTGCGTTGTTGTTGGATCACAATAAGC
ATTGGTCGTGAACTTCCAAACCTCAATCGGGTCCCGCGGGATGGAAATCG
TCAACTCCACTTACTACTGCGACTACTACTCGTACTGTGTGATAGTTCGA
TTCGGTCGCGCGTGTTCTACCTGTCCTCCTACGGGGTAACAGTGTACCGA
CAGCGTAGTGGTTCTCACCCGCTGGGTACTACTGTAATTCCGGGCGCAAA
AGGTTACTGTGTAAGGATGCTACAATAATACGAGGGCGCTTGCCGGGCGG
CGAGCCGCCCGACAGGCTCGCAGGATGGTAGGAAGCATGCCAAGATCTGA
GGGGAAATCTGTTTAAGGCGCAAACATCATCATGCTGAAAGAGTACAGGT
TTACGGTCAGTACAGCAGTAGAATGATACCCTGGTAGTAGATTACAGTCA
GTACATTTTTTTTTGGTAGTGCACATACGGCACAAAGATAAAGATTTACA
GTCAGTAGCAGAATGGTATCCTGGTACAACACACCTGGTAGTACAGTACA
GTCAGTAGTTTAGTGTAGTGCAGTATTAAATAGTAGTATACTGTACTGTA
TCATGGTAGAAGTAATAGTAGACCCTGAGTAGATAGCAAGCAGTAGTATA
GTACTGTTCTGTCTGTGCGTCTGTACTATGATACTACTGCTGTACTAAAA
GGGTCACGGCCAACGCATTTGCAATTAGGTAAACCCTTTGGCGTTCATTT
CTTGTTTGTTTTGCCGTTCTGGACGAAAAGGACGTTATTTGCAATGAAAT
GGTCAGGCCGTCGGGGTTTGTTTCTTAATTGTGTGTGTGTGTTTTCCGCA
AGATCCGGGGGCGAGGAACGATGGTTGTGCTCTGAGCTGTTAGCTATTTG
GGGCAATCCTAGGTAGGTTTATACCAGTTATATAGATACTCGGTATATAG
ATAAATAGGCTCTCGACCTATATAGCCATATATAGTTCGAGAGGTCTACT
AGACCCTAGAAATATATATAGTGACTTCGTGGCGCTAGCGAGGTACCTGG
GTAGTTAATTTCTCTTGCCGTCTCTTTGAACCGTATTCGGTTGCCCTGAT
GTGACATCAAAGCTAAGACCCGCAGGTCACAAAGTGGGACCCCCCCCCCC
GCCCCGCACCAGTGTAGTATCCTATCTTTCGTTCTTATCCCGCGTGGGTG
CAACGCTTTCTCACTCCCTACGCTGTTTTTTTTTTTTTTTTTTTCGGTCA
CAGCAGGGAGGACGGGGACGGTCGAGTCGATCACTCCGATCACCGCCTTC
ATCGCGCACCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:685257..686817-

>mRNA_D-herbacea_F_contig111.958.1 ID=mRNA_D-herbacea_F_contig111.958.1|Name=mRNA_D-herbacea_F_contig111.958.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=594bp|location=Sequence derived from alignment at D-herbacea_F_contig111:685257..686817- (Desmarestia herbacea DmunF female)
GCGCTTATTCCGGCGGCGCCGGCGGTAGAGAGTATGGAGCTGGAATCCGC
TGAGAACAGCCAAGTTTATGACGACTACCGCGATGGTGGTGATAATGACG
ACGATGATGATGATGACGGTGATGTTATTTTTGACGTGACAGGGGGTCGG
GCGCATTTGCACGCCATGGCCGTGAACGCAGCCGGTAGTGCCGGGGGGAC
GACTGCTGCTTTGACCGAGACACGCCCCTGGTTTGGGCAAGAGGCGCTTA
TTCCGGCGGCGCCGGCGGTAGAGAGTATGGAGCTGGAATCCGCTGAGAAC
AGCCAAGTTTATGACGACTACCGCGATGGTGGTGATAATGACGACGATGA
TGATGATGACGGTGATGTTATTTTTGACGTGACAGGGGGTCGGGCGCATT
TGCACGCCATGGCCGTGAACGCAGCCGGTAGTGCCGGGGGGACGACTGCT
GCTTTGACCGAGACACGCCCCTGGTTTGGGCAAGAGGGAGGACGGGGACG
GTCGAGTCGATCACTCCGATCACCGCCTTCATCGCGCACCGGAGGACGGG
GACGGTCGAGTCGATCACTCCGATCACCGCCTTCATCGCGCACC
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