mRNA_D-herbacea_F_contig111.952.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.952.1
Unique NamemRNA_D-herbacea_F_contig111.952.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:568294..568962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size669
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.911548-UTR-D-herbacea_F_contig111:568293..5686081622927519.911548-UTR-D-herbacea_F_contig111:568293..568608Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 568294..568608 +
1690790213.6451995-UTR-D-herbacea_F_contig111:568293..5686081690790213.6451995-UTR-D-herbacea_F_contig111:568293..568608Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 568294..568608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.9537299-CDS-D-herbacea_F_contig111:568608..5689621622927519.9537299-CDS-D-herbacea_F_contig111:568608..568962Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 568609..568962 +
1690790213.6544714-CDS-D-herbacea_F_contig111:568608..5689621690790213.6544714-CDS-D-herbacea_F_contig111:568608..568962Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 568609..568962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.952.1prot_D-herbacea_F_contig111.952.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 568609..568962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.952.1

>prot_D-herbacea_F_contig111.952.1 ID=prot_D-herbacea_F_contig111.952.1|Name=mRNA_D-herbacea_F_contig111.952.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=118bp
MRSPTTPSVVRTRVGPKRLRLYVRMTSLDWGHVQSRTRLLYDSKERGSYH
ADLIVEAIMRVAKGLSVLSLRFTHPPREPPQSNLKQTQPSSPSLATLAQP
SHSLVQSSSQAKAISNQK
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mRNA from alignment at D-herbacea_F_contig111:568294..568962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.952.1 ID=mRNA_D-herbacea_F_contig111.952.1|Name=mRNA_D-herbacea_F_contig111.952.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=669bp|location=Sequence derived from alignment at D-herbacea_F_contig111:568294..568962+ (Desmarestia herbacea DmunF female)
GCGGCAAGGACGGAGTCGTACTCGGACATTGGCTCCAACAGAGGCGATAC
ACTACGTGGAGACAGGGCCTGCACAGGAGGATCGACAAGAGAAACTACCG
GCGACGGGTGAGACGTGCCCGTCGCGGATACAGCGGCCTGAGAGACGGAA
ACCAGGGTGGCCGCTGGCCCCCTGGAGTGAGAAGAAACAGAAGTGGGGGG
GGAGCGCGGAGGGGTAGCTCCCGAGGCGGACATGGAGCGCGTCACGATTG
CACTCACGAACCCATCTATTCCCATAGACGCTTCGGACGCCATCTGCCAC
AACAACTAAAAAAAAATGCGATCGCCAACAACGCCAAGTGTAGTAAGAAC
CCGTGTCGGACCTAAGAGACTTCGCTTGTACGTTCGAATGACCTCTCTGG
ACTGGGGCCACGTCCAATCACGCACACGCCTTCTTTACGACTCAAAGGAA
CGAGGTTCGTATCACGCAGATTTAATAGTTGAGGCAATTATGAGAGTTGC
AAAAGGTTTGTCAGTACTGTCGCTTCGTTTTACACATCCACCTCGAGAAC
CACCACAATCCAATCTCAAACAAACTCAACCGAGCTCACCCTCACTCGCC
ACTCTTGCACAACCTTCACACTCACTTGTCCAATCTTCCTCTCAAGCAAA
GGCTATCTCAAACCAAAAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:568294..568962+

>mRNA_D-herbacea_F_contig111.952.1 ID=mRNA_D-herbacea_F_contig111.952.1|Name=mRNA_D-herbacea_F_contig111.952.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=708bp|location=Sequence derived from alignment at D-herbacea_F_contig111:568294..568962+ (Desmarestia herbacea DmunF female)
ATGCGATCGCCAACAACGCCAAGTGTAGTAAGAACCCGTGTCGGACCTAA
GAGACTTCGCTTGTACGTTCGAATGACCTCTCTGGACTGGGGCCACGTCC
AATCACGCACACGCCTTCTTTACGACTCAAAGGAACGAGGTTCGTATCAC
GCAGATTTAATAGTTGAGGCAATTATGAGAGTTGCAAAAGGTTTGTCAGT
ACTGTCGCTTCGTTTTACACATCCACCTCGAGAACCACCACAATCCAATC
TCAAACAAACTCAACCGAGCTCACCCTCACTCGCCACTCTTGCACAACCT
TCACACTCACTTGTCCAATCTTCCTCTCAAGCAAAGGCTATCTCAAACCA
AAAGATGCGATCGCCAACAACGCCAAGTGTAGTAAGAACCCGTGTCGGAC
CTAAGAGACTTCGCTTGTACGTTCGAATGACCTCTCTGGACTGGGGCCAC
GTCCAATCACGCACACGCCTTCTTTACGACTCAAAGGAACGAGGTTCGTA
TCACGCAGATTTAATAGTTGAGGCAATTATGAGAGTTGCAAAAGGTTTGT
CAGTACTGTCGCTTCGTTTTACACATCCACCTCGAGAACCACCACAATCC
AATCTCAAACAAACTCAACCGAGCTCACCCTCACTCGCCACTCTTGCACA
ACCTTCACACTCACTTGTCCAATCTTCCTCTCAAGCAAAGGCTATCTCAA
ACCAAAAG
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