mRNA_D-herbacea_F_contig111.947.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.947.1
Unique NamemRNA_D-herbacea_F_contig111.947.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 4.950e-55
Identity = 93/120 (77.50%), Postives = 107/120 (89.17%), Query Frame = 1 
Query:    1 MLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCGLDKDDN 360
            M+YVIKGEQLRVAFVEENGGEGAV+NDL QGDV+FFPQGLIHYQQNLDCEPATFLAALN+ED GA+TITT+FFELP EAI+AS+NFE   +Q LI+SLP+AP  AR+QCLQRC + +  N
Sbjct:   99 MVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASVNFEEPVLQNLIESLPDAPAAARQQCLQRCRMAEPGN 218
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BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.830e-52
Identity = 89/115 (77.39%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:    1 MLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCGL 345
            M YVI GE LRVAFVEENGGEGAV+NDL QGDV+FFPQGLIHY+QNL CEP TFLAALN++D GAVTITT+FFELP+EAI+ASLNFE   +Q LI+SLP+AP  AR+QCL+RCGL
Sbjct:  100 MQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASLNFEDPALQRLIESLPDAPAAARRQCLERCGL 214
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BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A0L0FR85_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FR85_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 3.170e-21
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    4 LYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCGLDKD 354
            LY+I+G Q+ + FV     +  +MNDL +  V+FFP+G +HYQQN++CE A F++ L++ED G + +++    LP EA+ A+ N + A + +L   LPE P  AR +CL RCGLD D
Sbjct:  172 LYMIEG-QVTLGFVSTE--DRLIMNDLEKDQVTFFPKGHLHYQQNMNCENAEFISILDNEDPGVLVVSSALLSLPDEALTATFNEDQALIAQLRLGLPEGPARARSECLARCGLDMD 285
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BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A0G4EJ88_VITBC (Cupin type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ88_VITBC)

HSP 1 Score: 103 bits (258), Expect = 4.000e-21
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:    1 MLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAP--GLARKQCLQRCGL 345
            ++Y+IKG ++ V F EENGG   V ND+ +GD +FFP  LIH+Q N  CEPA F+A LNS+D G  TI   FF LP + +  +L  +  +V  L + LP  P  GL R++C ++CGL
Sbjct:  205 IIYIIKG-RVSVGFAEENGGR-IVTNDVKEGDTAFFPHTLIHWQFNPTCEPAQFIATLNSDDGGVQTIAQAFFGLPDDVLATALGVDEYEVAVLREELPAGPALGLQREECRRKCGL 319
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BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A0L0FUE8_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUE8_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 1.690e-20
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:    4 LYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCGL 345
            +Y+I+G  L V FV E G    ++ND+     +FFPQGL+HYQQN+ CEPA F++ LNS D G + I     ELP+EA++A+ + + A V +L   LP  P   R +CL+RCGL
Sbjct:  183 VYIIEGA-LTVGFVTEGGR--LILNDVKTDQSTFFPQGLLHYQQNMACEPAGFISILNSSDPGLLVIPAALAELPSEALEATFDEDAAFVNQLRIGLPAGPARGRAECLRRCGL 293
[Close]
BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A0L0GAB9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAB9_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 1.700e-19
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    7 YVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCGL 345
            Y+I+GE L V FV E+G    V+ND+     +FFPQGL+HYQQN+ CEPA F++ L+S D G + I      LP EAI A+ + + A V ++   LP+ P   R +CL RCGL
Sbjct:   91 YMIEGE-LTVGFVMESGR--TVINDIKADQSTFFPQGLLHYQQNMGCEPAGFISILDSSDPGLLVIAAAVAGLPEEAIAAAFDEDEAFVAQMRMGLPKVPARGRAECLVRCGL 200
[Close]
BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A0L0G050_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G050_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 2.430e-19
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 MLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCG 342
            ++Y++ G  + V FV ENGG GA+MN+L     +FFPQGLIH+QQN++CEPA F+++LN  D G +T+  Q F LPTEA+ A+     A +  + + LP +  +AR  CL R G
Sbjct:  172 LVYMVSGA-VTVGFVGENGG-GAIMNNLSADMSTFFPQGLIHFQQNMECEPAVFVSSLNGVDPGTITLPEQLFALPTEALSAAFGQSEAAINLIRNVLPMS--IARSDCLARRG 281
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BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A0L0FML7_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FML7_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 3.210e-19
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:    4 LYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCGLDKD 354
            +YV+    L V FV E+     V+ND+     +FFPQGL+HYQQN++CEPA+F++ L+S D G   I      LP EA+KA L+ + + V +L   LP  P  AR +CL RC +  D
Sbjct:   26 IYVVNA-MLTVGFVAESSR--LVLNDIETDQSTFFPQGLLHYQQNMNCEPASFISILDSADPGLSVIAAALTALPDEALKAVLDEDVSFVTQLRLGLPAGPARARSECLARCSMAMD 139
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BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: L8H6S8_ACACA (Spherulin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6S8_ACACA)

HSP 1 Score: 95.1 bits (235), Expect = 1.130e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:   40 FVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLN-FETAKVQELIDSLPEAPGLARKQCLQRCGLDKD 354
            F  ENG E  VM ++ QG    FPQG IH++QN++CEPA F+A  N+ED G  TI + FF LPT  + ASL     + V++L   LP+ P L  ++C +RCGL  D
Sbjct:  132 FFMENGNE-FVMTNVTQGMAVVFPQGAIHFEQNMNCEPAVFVAGFNNEDPGVSTIASNFFGLPTAIVGASLGGLNISSVEDLRAMLPDNPALGTEECRRRCGLSLD 236
[Close]
BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Match: A0A0L0FU70_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FU70_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.700e-18
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1 
Query:    4 LYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCEPATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPEAPGLARKQCLQRCGLDKD 354
            LYVI G  L V FV E+G    V+ND+ +   +FFP+GL+HYQQN+ C PA F++ L++ D G + IT     LP EA+ A+   +   + +L   LP+ P  AR +CL+RCGL  D
Sbjct:  295 LYVIDG-MLTVGFVAESGR--LVLNDIEKDQTTFFPKGLMHYQQNMQCVPANFISILDTCDPGVLVITESLNALPDEALTATFGEDQEFINQLRLGLPDGPARARSECLKRCGLSSD 408
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV79_9PHAE4.950e-5577.50Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
D8LDW6_ECTSI1.830e-5277.39Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A0L0FR85_9EUKA3.170e-2143.59Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0G4EJ88_VITBC4.000e-2146.15Cupin type-1 domain-containing protein n=2 Tax=Vit... [more]
A0A0L0FUE8_9EUKA1.690e-2045.61Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0GAB9_9EUKA1.700e-1946.02Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0G050_9EUKA2.430e-1945.61Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FML7_9EUKA3.210e-1942.74Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
L8H6S8_ACACA1.130e-1846.23Spherulin, putative n=1 Tax=Acanthamoeba castellan... [more]
A0A0L0FU70_9EUKA1.700e-1843.59Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:434637..436346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.7
Seed ortholog evalue4e-49
Seed eggNOG ortholog2880.D7G6F4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
Ec32 ortholog descriptioncupin-like protein
Ec32 orthologEc-23_003580.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1378
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.947.1prot_D-herbacea_F_contig111.947.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 434637..435337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.652835-CDS-D-herbacea_F_contig111:434636..4348791622927523.652835-CDS-D-herbacea_F_contig111:434636..434879Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 434637..434879 +
1690790214.7101161-CDS-D-herbacea_F_contig111:434636..4348791690790214.7101161-CDS-D-herbacea_F_contig111:434636..434879Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 434637..434879 +
1622927523.6730335-CDS-D-herbacea_F_contig111:435211..4353371622927523.6730335-CDS-D-herbacea_F_contig111:435211..435337Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 435212..435337 +
1690790214.7217255-CDS-D-herbacea_F_contig111:435211..4353371690790214.7217255-CDS-D-herbacea_F_contig111:435211..435337Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 435212..435337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.686526-UTR-D-herbacea_F_contig111:435337..4363461622927523.686526-UTR-D-herbacea_F_contig111:435337..436346Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 435338..436346 +
1690790214.730498-UTR-D-herbacea_F_contig111:435337..4363461690790214.730498-UTR-D-herbacea_F_contig111:435337..436346Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig111 435338..436346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.947.1

>prot_D-herbacea_F_contig111.947.1 ID=prot_D-herbacea_F_contig111.947.1|Name=mRNA_D-herbacea_F_contig111.947.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=123bp
MLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVSFFPQGLIHYQQNLDCE
PATFLAALNSEDAGAVTITTQFFELPTEAIKASLNFETAKVQELIDSLPE
APGLARKQCLQRCGLDKDDNKN*
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mRNA from alignment at D-herbacea_F_contig111:434637..436346+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.947.1 ID=mRNA_D-herbacea_F_contig111.947.1|Name=mRNA_D-herbacea_F_contig111.947.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1710bp|location=Sequence derived from alignment at D-herbacea_F_contig111:434637..436346+ (Desmarestia herbacea DmunF female)
ATGCTCTACGTCATCAAGGGCGAGCAGCTCCGTGTGGCCTTTGTCGAGGA
GAACGGTGGAGAGGGTGCCGTGATGAACGATCTCTACCAGGGTGACGTCT
CCTTCTTCCCTCAAGGCCTCATCCACTACCAGCAGAATCTTGACTGCGAG
CCCGCCACGTTCCTGGCCGCGCTGAACTCCGAGGACGCTGGAGCGGTGAC
GATCACGACTCAATTCTTCGAGCTCCCCACCGAAGCCATTAAGGTGACTT
AAAGAGCAATTGCTCTTGCGTCCTGGGTTGCTGACGAGTAGGAAGGAACG
AAGGAAATAGTTGTGTTAGGATGGATCCACATGAAATTTATCGTGACCAA
GGGTCTAACGTACCACCGTCAGTCACATATATGCCGCGTGTACTTACATA
GTACACCTGTGGTGGCGCGGACTAACAGCATACCCCATGAAGTAGCAGAA
TTCCCCCCCCGTCAGTCAGCAGTGAGACGTCACAAACTCCTCGCCAAGTG
GATCTAACCCTTGCCCCCACCATGCCTTCTGTTTGTTGTGCCGGCTGCCG
CTCTTGTTCTGTCGTGCAATGTAAGGCTTCGCTGAACTTTGAAACCGCCA
AGGTGCAGGAACTGATCGACTCTCTACCCGAGGCGCCCGGCCTGGCACGC
AAGCAGTGCCTTCAGCGCTGCGGATTGGACAAGGACGACAACAAGAACTA
GGAAGCGTTTTTCTTGGTCGGGATATTTTCTTTAATGGTGTGTAATGTCG
AAAGAAAGAAGAGTCTGGTGGTGGAATGTTTTTTTCTGCCAGTATGTATA
CTTCGGTAGTAGTACGCTTTTTGAGACGACTGACTGCGGATATACAGGGA
CGCCGCCTCCATAGACATATTGCGAGCTGCTGCTGTCGATTTTGTTGATG
ACTAGCACCCAGTACAACAAGTACTTATAATAGAAGCATCAAGGGCGTAC
CCCCGCCCCCCTCCCCCCATTGTTGTGCTTTGTGTTGCTTTGTAATCATA
ATCAATCGCCGTTTGTTGTACGGGGTGGAGTAGTTGGCGCGGTATGACAG
TATTGACGGAGCTTACGCTTGTCTTTCGCGGATGCCGACACACCGCATAC
TATCAGAGGGGCAGCCATAATAATAATGGAAATATACACGGGAGCGGCGC
AAGCGTAGTGCTCTATAAAAGTGTGTTTCGAGAGGCAGCGGTGGGGGTCA
TTAGAAGAAGAGTGGTCGTTCAGTTTCACTGGATGCATGCATAGTTGCGT
TACCACTTTAGATTTGTTGAAACAGCAAGTGACCCGAGGATCTTTTGGGG
GCGGTGGTTAGATAGCGGTATCGACAATTTTGTAGTATATATCACTACTA
CCACTACTCCTGTAACAATTGAATTGGGCATTTCCGTCAACTTGACTGCG
TGCGACGTGATCAGTGATGTACAAATATTTGTTCCGTGTGCGAAATTGAG
TTTGTATTGCTAAGGCTGCAAAGCTATGTAAATAGTAAGTCATCGGAATG
GCGTGTGTTGTTGTTGTGTCGTTGGTGGTGTTTGTTTGGTGTAGGCTGGT
CCCGTGATGGGAAGAGTCTCGATGGATCGCTTCCACTATACACATGGAGG
AGCTGGTTGTGCCCAAGAATTTTGTGTGTGGTACACGTATGTATGTATGT
TGTTATTGTGATATGTTCATGAGTGAGTTGAGATGTTCGGTGATGTCGTG
TACAGTGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:434637..436346+

>mRNA_D-herbacea_F_contig111.947.1 ID=mRNA_D-herbacea_F_contig111.947.1|Name=mRNA_D-herbacea_F_contig111.947.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=738bp|location=Sequence derived from alignment at D-herbacea_F_contig111:434637..436346+ (Desmarestia herbacea DmunF female)
ATGCTCTACGTCATCAAGGGCGAGCAGCTCCGTGTGGCCTTTGTCGAGGA
GAACGGTGGAGAGGGTGCCGTGATGAACGATCTCTACCAGGGTGACGTCT
CCTTCTTCCCTCAAGGCCTCATCCACTACCAGCAGAATCTTGACTGCGAG
CCCGCCACGTTCCTGGCCGCGCTGAACTCCGAGGACGCTGGAGCGGTGAC
GATCACGACTCAATTCTTCGAGCTCCCCACCGAAGCCATTAAGATGCTCT
ACGTCATCAAGGGCGAGCAGCTCCGTGTGGCCTTTGTCGAGGAGAACGGT
GGAGAGGGTGCCGTGATGAACGATCTCTACCAGGGTGACGTCTCCTTCTT
CCCTCAAGGCCTCATCCACTACCAGCAGAATCTTGACTGCGAGCCCGCCA
CGTTCCTGGCCGCGCTGAACTCCGAGGACGCTGGAGCGGTGACGATCACG
ACTCAATTCTTCGAGCTCCCCACCGAAGCCATTAAGGCTTCGCTGAACTT
TGAAACCGCCAAGGTGCAGGAACTGATCGACTCTCTACCCGAGGCGCCCG
GCCTGGCACGCAAGCAGTGCCTTCAGCGCTGCGGATTGGACAAGGACGAC
AACAAGAACTAGGCTTCGCTGAACTTTGAAACCGCCAAGGTGCAGGAACT
GATCGACTCTCTACCCGAGGCGCCCGGCCTGGCACGCAAGCAGTGCCTTC
AGCGCTGCGGATTGGACAAGGACGACAACAAGAACTAG
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