mRNA_D-herbacea_F_contig110.896.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig110.896.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 270 bits (690), Expect = 8.980e-83 Identity = 149/361 (41.27%), Postives = 209/361 (57.89%), Query Frame = 1
Query: 445 MDTSVLMPIPSLPFWSDQNVSKLVQFTSALRDAVASMRVACDDSHPTLWTRGWEKCLERHVLRAVRSSSLKASSVKLMISDAFGQGGRLLDRGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVVPPGTLFSTYVAELRLLLANVWCVGQVEPEDGTMQVAVKTGVDDQFAGLGAQSFSGRNLRSLPFDSVDELMGALEDVSLNQTRATESARL------------------------GGHVSRTSARAPVPAAGNKYNKVLSVEQENYNDMDSEFSKIYSIMQERGGFCKNNDDPPFYIHFNSREERDTALRSFGPYCLNCA--DPSHFARNCPESYINRSKIIHPANGEGDAETIE 1449
M T L+ +P P + +V +LVQ +SA+ +V +R + D W RGWEK LERH++ +VR + K+++ K ++ A Q R +D G SGPD LQ ++RA+C GLS+ TPA V+Q LQN VP GT F Y+ +L++L+ +V VG E DGT+QVAVK GV DQ+A L A F GRN ++LP+DS++ LM AL+D++ N T AT S RL GG S + + P V++V Q Y+D EF ++ + + GF +N+DDPPFY+ F + +ERD A R FGP CLNC +P H AR CP+ +N S +IHP GD ET+E
Sbjct: 1 MATKNLITMPLTPLQNGDDVVELVQLSSAITKSVEQIRASAQDFDSDHWVRGWEKVLERHLINSVRKNHAKSAATKQILVAAVNQSVRAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVRLRGVGSVLPRGQADMSVSSRGRYGGGGSFSGAKSGSLTPQGSAGARAVMTVAQ--YDDESREFWQVSQVSRGNKGFGRNDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVE 357
BLAST of mRNA_D-herbacea_F_contig110.896.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE) HSP 1 Score: 254 bits (649), Expect = 1.310e-70 Identity = 141/343 (41.11%), Postives = 200/343 (58.31%), Query Frame = 1
Query: 436 YARMDTSVLMPIPSLPFWSDQNVSKLVQFTSALRDAVASMRVACDDSHPTLWTRGWEKCLERHVLRAVRSSSLKASSVKLMISDAFGQGGRLLDRGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVVPPGTLFSTYVAELRLLLANVWCVGQVEPEDGTMQVAVKTGVDDQFAGLGAQSFSGRNLRSLPFDSVDELMGALEDVSLNQTRATESARL---GGHVSRTSARAPVPAAGNKYNKVLSVEQENYNDMDSEFSKIYSIMQERGGFCKNNDDPPFYIHFNSREERDTALRSFGPYCLNCA--DPSHFARNCPESYINRSKIIHPANGEGDAETIE 1449
+A M T LM +P P + +V +LVQ +SA+ +V +R + D W RGWEK LERH+++ VR + K+++ K ++ A Q R D G SGPD L+ ++RA+C GLS+ TPA V+Q LQN VP GT F Y+ +L++L+ +V VG E DGT+QVAVK GV DQ+A A F GRN ++LP+DS++ LM AL+D++ N T AT S + G + R A V + G V Y D EF ++ + + GF +N+DDP F++ + +ERD A R FGP NC +P H AR CP+ +N S +IHP GD ET+E
Sbjct: 1049 FAVMATKNLMTMPLTPLQNGDDVVELVQLSSAITKSVEQIRASAQDFDSDHWVRGWEKVLERHLIKPVRKNHAKSAATKQILVAAVNQSVRATDSGMSGPDALKLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATCTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVHVRGVGSVMPRGQAGMSVSSRGRYGGGVA-----QYYDESREFWQVSQVSRGNKGFGRNDDDPNFFVQLSDNQERDRARREFGPKSRNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVE 1384
BLAST of mRNA_D-herbacea_F_contig110.896.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 204 bits (520), Expect = 4.340e-54 Identity = 131/376 (34.84%), Postives = 202/376 (53.72%), Query Frame = 1
Query: 391 DHSPSPRRVCLACKAYARMDTSVLMPIPSLPFWSDQNVSKLVQFTSALRDAVASMRV-ACDDSHPTLWTRGWEKCLERHVLRAVRSSSLKASSV--KLMISDAFGQGGRLLDRGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVVPPGTLFSTYVAELRLLLANVWCVGQVEPEDGTMQVAVKTGVDDQFAGLGAQSFSGRNLRSLPFDSVDELMGALEDVSLNQTRATESARL------------GGHVSR-TSARAPVPAAGNKYNK-------VLSVEQENYNDMDSEFSKIYSIMQERGGFCKNNDDPPFYIHFNSREERDTALRSFGPYCLNCADPSHFARNCPESYINRSKIIHPANGEGDAETIE 1449
D S +V + YA T+ LM +P L +V++ V +S L V +R+ A D+S + W RGW+ LE+HVL +V S A + K I+ +F Q + LD G +G + L +++R L R LS ATP V+ ALQNL V GT FS Y+ LR L+ N VG +D +Q+AV+ V DQ++ + F GR+L ++P+DS+ +LM ALE ++ N T AT R GG+ S T++ A +AG Y K V+++ +E D + EF K++ + + + PFY F+SR+E+D A +++G CLNC D SHF R C +IN+S +++P G+G + ++
Sbjct: 446 DERLSKEQVTAIRQKYATYSTANLMRLPLLA-GQRMSVAETVSLSSTLVKNVEELRLGAGDNSKSSDWVRGWDIALEKHVLNSVSSRLPNAQGLDLKAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDALEVLAWNTTEATAVKRNVISVQTKRAGQGGGNASAGTTSYASAASAGRMYGKQPSQGARVMNIHEE-MEDEEKEFKKVHYVATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVK 819
BLAST of mRNA_D-herbacea_F_contig110.896.1 vs. uniprot
Match: A0A6H5JI85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI85_9PHAE) HSP 1 Score: 133 bits (335), Expect = 4.140e-32 Identity = 73/146 (50.00%), Postives = 97/146 (66.44%), Query Frame = 1
Query: 664 SVKLMISDAFGQGGRLLDRGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVVPPGTLFSTYVAELRLLLANVWCVGQVEPEDGTMQVAVKTGVDDQFAGLGAQSFSGRNLRSLPFDSVDELMGALEDVSLNQTRATESARLGG 1101
S +++++ A Q R +D SGPD L V+R++C GLS T A V+Q LQN VP GT F Y+ EL++L+ +V VG E DGT+QVAVK GV DQFA L A F GRN ++LP+D++D+LM ALED+ N T AT S R+ G
Sbjct: 115 SAQILVA-AITQARRAMDAETSGPDALTMVLRSVCGGLSKVTSALVLQQLQNFAVPAGTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDNLDDLMAALEDMIENTTTATSSTRVRG 257
BLAST of mRNA_D-herbacea_F_contig110.896.1 vs. uniprot
Match: A0A6H5KFF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF1_9PHAE) HSP 1 Score: 133 bits (334), Expect = 8.030e-30 Identity = 78/164 (47.56%), Postives = 103/164 (62.80%), Query Frame = 1
Query: 667 VKLMISD--AFGQGGRLLDRGDSGPDVLQYVIRALCRGLSSATPAAVMQALQNLVVPPGTLFSTYVAELRLLLANVWCVGQVEPEDGTMQVAVKTGVDDQFAGLGAQSFSGRNLRSLPFDSVDELMGALEDVSLNQTRATESARLGGHVSRTSARAPVPAAGNK 1152
V+ +++D A Q R +D SGPD L V+R++C GLS T A V+Q LQN VP T F Y+ EL++L+ +V VG E DGT+QVAVK GV DQFA L A F GRN ++LP+D +D+LM A ED+ N T AT S R+ G V +R PV A+G +
Sbjct: 403 VEAVVADVAAITQARRAMDAKTSGPDALTMVLRSVCGGLSEVTSALVLQQLQNFAVPVDTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMVAFEDMIENTTTATSSTRVRG-VGSAVSRGPVVASGGR 563
BLAST of mRNA_D-herbacea_F_contig110.896.1 vs. uniprot
Match: A0A6H5JVS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS0_9PHAE) HSP 1 Score: 116 bits (290), Expect = 1.330e-26 Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = 1
Query: 751 VIRALCRGLSSATPAAVMQALQNLVVPPGTLFSTYVAELRLLLANVWCVGQVEPEDGTMQVAVKTGVDDQFAGLGAQSFSGRNLRSLPFDSVDELMGALEDVSLNQTRATESARLGGHVSRTSARAPVPAAG 1146
V+R++C GLS T A V+Q LQ VP GT F Y+ EL++L+ +V VG E DGT+QVAVK GV DQFA L A F GRN ++LP+D +D+LM ALE + N T AT S R+ G V +R PV A+G
Sbjct: 2 VLRSVCGGLSEVTSALVLQQLQKFAVPVGTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMAALEYMIENTTTATSSTRVRG-VGSAVSRGPVVASG 130 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig110.896.1 >prot_D-herbacea_F_contig110.896.1 ID=prot_D-herbacea_F_contig110.896.1|Name=mRNA_D-herbacea_F_contig110.896.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=484bp EDTRVRDDFREFERLTAMFPGVPAHSLRDFQRFQQRDHHGQGSGGHDYDGback to top mRNA from alignment at D-herbacea_F_contig110:76791..78242+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig110.896.1 ID=mRNA_D-herbacea_F_contig110.896.1|Name=mRNA_D-herbacea_F_contig110.896.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1452bp|location=Sequence derived from alignment at D-herbacea_F_contig110:76791..78242+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig110:76791..78242+ >mRNA_D-herbacea_F_contig110.896.1 ID=mRNA_D-herbacea_F_contig110.896.1|Name=mRNA_D-herbacea_F_contig110.896.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2904bp|location=Sequence derived from alignment at D-herbacea_F_contig110:76791..78242+ (Desmarestia herbacea DmunF female)back to top |