mRNA_D-herbacea_F_contig11.866.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.866.1
Unique NamemRNA_D-herbacea_F_contig11.866.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig11.866.1 vs. uniprot
Match: D8LQE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE7_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.500e-91
Identity = 142/206 (68.93%), Postives = 176/206 (85.44%), Query Frame = 1 
Query:  208 KKTSRALKRARRLREASMAKVLGGEDWTGYEGTMKQGMRELDDTAEAKQRGTYASKRLVSRSFKEGDDDGMDGRMMSELEAWADRVEIVWNEILQADSRAGKPRVSLPGFPIEVVKVKIARDFGHQKIFWDFSEGGMRPPDTLLRQLHEAQSKGFNARAVVLKSTAERLRQREGYLRANLAKRIPMRRVPEVRWQHISEMPASLRL 825
            KK SRAL RARRLR ASMA VLG E+W+GYE TM+QG+RELDDT E K+RGTYASK LVS + +   +D  DGR++SE +AWA+R+E VWNEILQAD++  +PR++LPGFPI VV VKIARD+GH KIFW+ S+   RPP+++LRQL+EA+ +GFNARAVV+KSTAERLR+ EGYLRANLA+R+PMRRVPEVRWQH+SEMP SL++
Sbjct:   15 KKMSRALVRARRLRNASMATVLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSAAPQADKND--DGRLLSERDAWAERMEGVWNEILQADAKGTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYEARKQGFNARAVVVKSTAERLRKYEGYLRANLARRVPMRRVPEVRWQHVSEMPMSLQI 218
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE7_ECTSI3.500e-9168.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1115335..1119701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosome-binding factor A
Ec32 orthologEc-10_005360.1
Exons6
Model size1238
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.866.1prot_D-herbacea_F_contig11.866.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 1115350..1119291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.9730597-UTR-D-herbacea_F_contig11:1115334..11153491622927508.9730597-UTR-D-herbacea_F_contig11:1115334..1115349Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1115335..1115349 +
1690790207.5479345-UTR-D-herbacea_F_contig11:1115334..11153491690790207.5479345-UTR-D-herbacea_F_contig11:1115334..1115349Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1115335..1115349 +
1622927509.078009-UTR-D-herbacea_F_contig11:1119291..11197011622927509.078009-UTR-D-herbacea_F_contig11:1119291..1119701Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1119292..1119701 +
1690790207.624488-UTR-D-herbacea_F_contig11:1119291..11197011690790207.624488-UTR-D-herbacea_F_contig11:1119291..1119701Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1119292..1119701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.9922419-CDS-D-herbacea_F_contig11:1115349..11154461622927508.9922419-CDS-D-herbacea_F_contig11:1115349..1115446Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1115350..1115446 +
1690790207.5581958-CDS-D-herbacea_F_contig11:1115349..11154461690790207.5581958-CDS-D-herbacea_F_contig11:1115349..1115446Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1115350..1115446 +
1622927509.0071266-CDS-D-herbacea_F_contig11:1115894..11161631622927509.0071266-CDS-D-herbacea_F_contig11:1115894..1116163Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1115895..1116163 +
1690790207.5666652-CDS-D-herbacea_F_contig11:1115894..11161631690790207.5666652-CDS-D-herbacea_F_contig11:1115894..1116163Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1115895..1116163 +
1622927509.0190253-CDS-D-herbacea_F_contig11:1116871..11170361622927509.0190253-CDS-D-herbacea_F_contig11:1116871..1117036Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1116872..1117036 +
1690790207.5752313-CDS-D-herbacea_F_contig11:1116871..11170361690790207.5752313-CDS-D-herbacea_F_contig11:1116871..1117036Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1116872..1117036 +
1622927509.0377629-CDS-D-herbacea_F_contig11:1117730..11178381622927509.0377629-CDS-D-herbacea_F_contig11:1117730..1117838Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1117731..1117838 +
1690790207.5849028-CDS-D-herbacea_F_contig11:1117730..11178381690790207.5849028-CDS-D-herbacea_F_contig11:1117730..1117838Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1117731..1117838 +
1622927509.0502598-CDS-D-herbacea_F_contig11:1118069..11181831622927509.0502598-CDS-D-herbacea_F_contig11:1118069..1118183Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1118070..1118183 +
1690790207.6046808-CDS-D-herbacea_F_contig11:1118069..11181831690790207.6046808-CDS-D-herbacea_F_contig11:1118069..1118183Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1118070..1118183 +
1622927509.0640793-CDS-D-herbacea_F_contig11:1119231..11192911622927509.0640793-CDS-D-herbacea_F_contig11:1119231..1119291Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1119232..1119291 +
1690790207.6158104-CDS-D-herbacea_F_contig11:1119231..11192911690790207.6158104-CDS-D-herbacea_F_contig11:1119231..1119291Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1119232..1119291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.866.1

>prot_D-herbacea_F_contig11.866.1 ID=prot_D-herbacea_F_contig11.866.1|Name=mRNA_D-herbacea_F_contig11.866.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=271bp
MYGACRRTLISGANRTARIDAVQITQRLPALFDCQPWHQQRQPHRHQQQQ
ERYASSGGLTVQQKKKTSRALKRARRLREASMAKVLGGEDWTGYEGTMKQ
GMRELDDTAEAKQRGTYASKRLVSRSFKEGDDDGMDGRMMSELEAWADRV
EIVWNEILQADSRAGKPRVSLPGFPIEVVKVKIARDFGHQKIFWDFSEGG
MRPPDTLLRQLHEAQSKGFNARAVVLKSTAERLRQREGYLRANLAKRIPM
RRVPEVRWQHISEMPASLRL*
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mRNA from alignment at D-herbacea_F_contig11:1115335..1119701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.866.1 ID=mRNA_D-herbacea_F_contig11.866.1|Name=mRNA_D-herbacea_F_contig11.866.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4367bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1115335..1119701+ (Desmarestia herbacea DmunF female)
TTTACAGACTCTAAAATGTACGGTGCGTGCCGAAGAACGCTTATCTCCGG
CGCTAACCGCACGGCGAGGATTGATGCTGTGCAGATAACTCAGCGTTTAC
CTGCTTTATTTGGTGAGAAGCTCATGAACTGAATAGTGCTCGCCTCGACA
CGTACTGCAGGGTGCTGCTATTATACGACAACAACAACAACAACAACAAC
AACATATCATACATATCGTAGCGATACAACATGTTCGTGCAAATGTTCGT
CACACGCAGAGCTCTGGTCTTTGCCATGTGTACTTGTTGTATAGGCAGTC
CCTTTGCCGGGCGTGCGACGCCCTACAGACAGTAGTAGCAAGTACTACTA
TCATACTACGGTGTCTTTTACAAGCTATATATACTGCCTGCACCCTAATG
CGATGAACTCGTTGTGAACTTCACATTCGGCAACATTCTCCTCTGGATTG
CTCGTACATGTCTCGCTTGCGGCCAACTCAACAACAGTACAAGTGGCAGT
ACCGTCTATGCTCACATATTTGACGAGAACCCTTCCCCCGGTCCATTTGC
TGCCGACCAGATTGCCAACCATGGCACCAACAACGTCAACCACACCGGCA
CCAACAACAGCAAGAGAGGTATGCTAGCTCGGGCGGTCTGACCGTACAGC
AAAAAAAGAAGACGTCTAGAGCTTTGAAAAGGGCCCGGCGTCTGCGGGAA
GCGTCTATGGCAAAGGTCCTCGGCGGTGAGGATTGGACGGGGTACGAGGG
CACCATGAAGCAGGGTATGAGAGAGCTGGACGATACGGCGGAGGCGAAAC
AGCGGGGAACCTACGCTAGCAAGCGTCTAGTGAGTACGGTGGAGGATAGA
GGTATTGGGAGGAGCAAGCTTTAGTGGTTCGGCCTGTCGTCATGCGTCTC
GGTAGGGACGGGCGTCTCCCGGAGGGTCACGAATCACACTCATACTCATA
CTCGTAGCTGTAAAAAAAAAAATTAACGTTTGTTTATTTAGTTCGACCGA
TACTTTCGTGCGACAAGCTCCGGGATCCGAGCAAAAATCGACCAACGATT
GGTATGTAGAGTCTATGCCACGAGGAGTACATGTGTGTGTGTGTGTTCAT
TTCGGTTTTTGTTTTCTAGCGCGCCTTGGTCATAATGTAGATACATCGTA
TGCCATGACCAACTCGTCTCTCAGACTACAACAGGAGCCACCGCATTGAT
TGCGACGCCAAGATCGGCTTTTTCACTCCCCCGCACGAGTGGCTCCATAG
TTTCCAAGCGGAACCCGGGGTAGATGAGGAGGAAAACCTTCGCCTGCACA
GAGATGCAACCACAACTAAAAAAACGGCCAGTCGAATGATGATGTCGATG
GGCAAAGGCATGAGCACACATCACTATTTCATTAGAGCTATCCTGCTTGT
AATCGTGCGGGAAGGGTTGGCGTGCATGATAAGAGATTTTTCCCCTAAGG
TGAAGGGCATTTGGAAAATGCCGCCTTCGAAAATGTGCTGCTAGTCAATA
CTTCCCCCTCCGGTCCTCAATTTACTTGCCGCGTTAGGTATCACGGTCCT
TCAAGGAGGGGGACGATGATGGTATGGATGGCAGGATGATGTCAGAGCTA
GAGGCGTGGGCGGACAGGGTGGAAATCGTTTGGAATGAAATATTGCAGGC
CGACTCACGGGCCGGAAAGCCACGAGTATCGCTCCCCGGGTTTCCTATTG
AGGTGAGGCCCAACAGTCGAGGAAAGCCTTGCCGGGAATGACATTGGATC
GTTGAGCCGCACCTGGGCTAGCTAGCTGACAATACTTATCCCAGGCAATA
CGACTACAACGCTACGGGCTTGAGTGAGATCTGCTCCAACGGTACAGCCC
TGGCTTTTCGGTAGCTGCGGTTTGTTACGGAGTTGGAGCGTCGCTAAAGC
TGTTTTGACGAGTGCTGTGGGTGTCCCGGGATGTTTCCGTTTTACTGTAT
CGAACGCCTCCACAGATGTCTGAGGATATTCCTGTGCGCCGCTAAGATAG
GCGTGTTACACGTCTGCACGCTTGAAGTGGTGCTTCCTTTAAAATGGCAA
TGCAATGCTCATGGAATGTTGAGTTGAATGCGTCGCACCAACACTAAAAT
ACAAATGAAAAACTTGGATTCAAAACAGCAGTTCTTTTTCCTGAATTTGT
TTAGATAGCACTACTGTAAGCTGGTATGTGCCTTACTGCAATCACTTATG
ATGACTACGGCAGCTTTTATGGACATAAGTTGTCACCCCCGAATGCATCG
ATCATACCGCTGCACCGCAATTGATGACCACGCCCTAGAGGTACCGGGTG
ATTCTTAGTCAACTCGGAGCAGTATGGAAGTTAACAGAGGAGGAGCAGGC
AACGTCCCGTTTTCCTCTCCACTGGAACCGTTTTCATGCACAATAGGTCG
TGAAAGTTAAGATCGCCAGGGATTTCGGACACCAGAAGATTTTCTGGGAT
TTCAGCGAAGGAGGTATGCGCCCACCAGACACGCTTCTTCGACAGCTACA
CGAGGTAAATAAACGGATCTTCCAATGCCCAACAGTAGTAGTCATACAAT
TGTTCATCGGTAGAGGCCGTTGTTGTTCTCCTACATGCGAGATGCTCATC
ACTCTTGAAGCCAATTTTTTGTGTCACAAATCTCGTCTGTTTCTTGGGGT
AGTCGTGATGCAACGGGCTTTCCGGGTCACAATAAGAATCGTGTGTCAAC
CCGCCCCCCACGCAACCCCGCTTGTATTCGGCCAGGCTCAGAGCAAAGGC
TTTAACGCAAGAGCAGTGGTGCTCAAGAGCACAGCGGAGAGGTTGAGACA
AAGGGAGGGTTACCTCAGGGCTAACCTCGCCAAGCGGATTCCTATGCGGG
TGAGTGGCGGGGGTCGGTAGTTTTTGTTGTTGTGGGTGTCACACTTATCA
CGAGGGCCCCTAATAAATAGGCCCAAAACACTTATATTGACGTGCGTATC
GCGAGACAGACAGGACAGGTGTGAATCGCCGATCTCGTTCGTTTTGATCA
TGCGGTGGCAGTAGACGTACCAACAATGCTATAATTGTTCTGGTGGGGGG
GGGGGAGGATCGGGAAGGATATTTGCGCTGCCCCTTTTCATCTTGTTTTG
GGCCTATTTGTTATGGACGTCTGTAAATAGTGAGTTAGACGTCAAAGGTT
CGGATTTCGTGGAACGTGATGGCGAACGGGAATGTAGTGCAAAGTGTGGC
ACCCAGCTGAGACACTGTTGAGCGGTGGTTGCGGTATGTAACCCAGTTTC
ATACCACGAAACGTCCTCGACTATGGTACCATCCACGAAACCGTGGATAC
TAACGGGTAGTGGCGTGAACGGAACATAGACATTTCGGTATGGCAAATGT
ATGTTTTGGGTAAACATAAACATTACTATGTATTTTCTGGCGTTGTTCCA
CTGGTTAATACATTGGGCACCTAGCTCTCTTTCCGGCTCCCATACCAACC
GCCGGGATGTAGTATGGCGTGTGTGTCGCCCCCCCACTCCACCCCCCCGT
GTCCTTCGGTAGTTCGAAGTGGCCTGACTAGCAAGGTTTGCGGTTGATAT
ATTTGACAAGAGTGGTTTTGAGCCGCCTTTCGCGGAAAATGAAGAAGCGG
TGGACATCGGCAAATGATTGCGCTCCTGTGGGAGCAATGCTCGACTTCCC
CTAGGAGACCCTTGAGAATGTTCTTTCGGCTAAGGCACGTAAAACGTTAG
CGCAACCCCCGCCCTCCACTGCTGTGTCAATGTGTCTCGGCATTGAAAGG
AGGGCCAGGGTTGATGACTATAGCATGCCGTATCATGAGAGCACCCCTTC
TGCTGCCGTCGCTCGTTGTGTTTGTCCCTCTCTTTGCACCGTCCGCCCCG
CACTTTTTCCGTCCGTGAACTTGTTGGGAACCCTTGGCGGATCGCAGAGA
GTTCCAGAAGTCCGCTGGCAACACATTTCAGAGATGCCCGCGTCATTGCG
GCTCTAGGGATGGGATGAGAGAGGGAACCATCGCGGGTGGAGCATCCAAC
TCATATAATAGTCGTTGAGAGATGTGGCACAGCTCGGATTTCCTCTCATC
ACTGGGAAACTGCTTTACAAGTTCTTCTTGACTGGGTCCGTGACTGTTTG
TCTGCCGAGTTTGGAGTTAACAAGAAGGTTGCTTGGAGGTAAACTCTTGA
TTGCGCCTGCGACAAAAGGCGTAGTGGTTCGCGGACACGAGAGGAGGAAC
GAGCAGGAGGACGATTCCCGCTGCTCTTGGTATGCCGCAAACAAACGTGT
GCCCTTGACGAGGGATGAGAATCGCTTGGATCGCCGTTCTTTTTTTATCC
ATCAATTGAAATTCCCAGTCCAGCTCATAGGCACTCATTGCTCAGCGCCT
GTCTGGGCATGCCGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1115335..1119701+

>mRNA_D-herbacea_F_contig11.866.1 ID=mRNA_D-herbacea_F_contig11.866.1|Name=mRNA_D-herbacea_F_contig11.866.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1626bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1115335..1119701+ (Desmarestia herbacea DmunF female)
ATGTACGGTGCGTGCCGAAGAACGCTTATCTCCGGCGCTAACCGCACGGC
GAGGATTGATGCTGTGCAGATAACTCAGCGTTTACCTGCTTTATTTGATG
TACGGTGCGTGCCGAAGAACGCTTATCTCCGGCGCTAACCGCACGGCGAG
GATTGATGCTGTGCAGATAACTCAGCGTTTACCTGCTTTATTTGATTGCC
AACCATGGCACCAACAACGTCAACCACACCGGCACCAACAACAGCAAGAG
AGGTATGCTAGCTCGGGCGGTCTGACCGTACAGCAAAAAAAGAAGACGTC
TAGAGCTTTGAAAAGGGCCCGGCGTCTGCGGGAAGCGTCTATGGCAAAGG
TCCTCGGCGGTGAGGATTGGACGGGGTACGAGGGCACCATGAAGCAGGGT
ATGAGAGAGCTGGACGATACGGCGGAGGCGAAACAGCGGGGAACCTACGC
TAGCAAGCGTCTAATTGCCAACCATGGCACCAACAACGTCAACCACACCG
GCACCAACAACAGCAAGAGAGGTATGCTAGCTCGGGCGGTCTGACCGTAC
AGCAAAAAAAGAAGACGTCTAGAGCTTTGAAAAGGGCCCGGCGTCTGCGG
GAAGCGTCTATGGCAAAGGTCCTCGGCGGTGAGGATTGGACGGGGTACGA
GGGCACCATGAAGCAGGGTATGAGAGAGCTGGACGATACGGCGGAGGCGA
AACAGCGGGGAACCTACGCTAGCAAGCGTCTAGTATCACGGTCCTTCAAG
GAGGGGGACGATGATGGTATGGATGGCAGGATGATGTCAGAGCTAGAGGC
GTGGGCGGACAGGGTGGAAATCGTTTGGAATGAAATATTGCAGGCCGACT
CACGGGCCGGAAAGCCACGAGTATCGCTCCCCGGGTTTCCTATTGAGGTA
TCACGGTCCTTCAAGGAGGGGGACGATGATGGTATGGATGGCAGGATGAT
GTCAGAGCTAGAGGCGTGGGCGGACAGGGTGGAAATCGTTTGGAATGAAA
TATTGCAGGCCGACTCACGGGCCGGAAAGCCACGAGTATCGCTCCCCGGG
TTTCCTATTGAGGTCGTGAAAGTTAAGATCGCCAGGGATTTCGGACACCA
GAAGATTTTCTGGGATTTCAGCGAAGGAGGTATGCGCCCACCAGACACGC
TTCTTCGACAGCTACACGAGGTCGTGAAAGTTAAGATCGCCAGGGATTTC
GGACACCAGAAGATTTTCTGGGATTTCAGCGAAGGAGGTATGCGCCCACC
AGACACGCTTCTTCGACAGCTACACGAGGCTCAGAGCAAAGGCTTTAACG
CAAGAGCAGTGGTGCTCAAGAGCACAGCGGAGAGGTTGAGACAAAGGGAG
GGTTACCTCAGGGCTAACCTCGCCAAGCGGATTCCTATGCGGGCTCAGAG
CAAAGGCTTTAACGCAAGAGCAGTGGTGCTCAAGAGCACAGCGGAGAGGT
TGAGACAAAGGGAGGGTTACCTCAGGGCTAACCTCGCCAAGCGGATTCCT
ATGCGGAGAGTTCCAGAAGTCCGCTGGCAACACATTTCAGAGATGCCCGC
GTCATTGCGGCTCTAGAGAGTTCCAGAAGTCCGCTGGCAACACATTTCAG
AGATGCCCGCGTCATTGCGGCTCTAG
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