mRNA_D-herbacea_F_contig11.861.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.861.1
Unique NamemRNA_D-herbacea_F_contig11.861.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: D8LQG0_ECTSI (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG0_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.080e-32
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 MIVKSSQLRFKRETGIGIATGNMCTGLIGKSNFRSEYALAGDVVNLAARLAASAEKEKKGVLCDEATLKSLVGEV 225
            MIV SS  RFKR+TG+GIATG+MCTG+IGK NFRSEYALAGDVVNLAARLAA++EK + GVLCDEATL+SL GEV
Sbjct:    1 MIVMSSDERFKRKTGVGIATGHMCTGIIGKPNFRSEYALAGDVVNLAARLAAASEKGENGVLCDEATLQSLTGEV 75
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: A0A835YYC7_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.100e-15
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    4 IVKSSQLRFKRETGIGIATGNMCTGLIGKSNF-RSEYALAGDVVNLAARLAASAEKEKKG-VLCDEATL 204
            I ++++  F+   G+GIA+G +C GLIGK++F R EYALAGD+VNLAARLAA A+ E++G VLCD+ T+
Sbjct:   33 IKETAKRDFRHRVGVGIASGQICCGLIGKADFSRCEYALAGDMVNLAARLAARADTEREGCVLCDQYTI 101
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: A0A061RLZ7_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLZ7_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.390e-5
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   49 GIATGNMCTGLIGKSNFRSEYALAGDVVNLAARLAASAEKEKKGVLCDEATLKSLVGEVRA 231
            G+ATG+   GL+G    R EYA+ GD VN AARLAA A K  + +LC ++  +++V +  A
Sbjct:  188 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAVVHDREA 248
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: A0A7S1SUT1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUT1_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.400e-5
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   49 GIATGNMCTGLIGKSNFRSEYALAGDVVNLAARLAASAEKEKKGVLCDEA 198
            GI TG+   GL+G    R EYA+ GD+VN AARLA  A K  + +LC EA
Sbjct:   79 GITTGHCFCGLVGDPKIRCEYAVMGDIVNTAARLAGGAAKRGESILCAEA 128
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: A0A061RZX5_9CHLO (Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZX5_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   49 GIATGNMCTGLIGKSNFRSEYALAGDVVNLAARLAASAEKEKKGVLCDEATLKSLVGEVRA 231
            G+ATG+   GL+G    R EYA+ GD VN AARLAA A K  + +LC ++  +++V +  A
Sbjct:  545 GLATGSCYCGLVGNPRTRCEYAVMGDTVNTAARLAAHAAKTNQALLCGQSVQEAVVHDREA 605
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: A0A061RBI5_9CHLO (Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBI5_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 6.560e-5
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   49 GIATGNMCTGLIGKSNFRSEYALAGDVVNLAARLAASAEKEKKGVLCDE 195
            G+A+GN   GL+G    R EYA+ GD VN AARLA +A K  + ++C E
Sbjct:  481 GLASGNCYCGLVGSPEIRCEYAVMGDTVNTAARLAGAAHKMGRPIICAE 529
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: UPI001BDF00B8 (AAA and adenylate/guanylate cyclase domain-containing protein n=1 Tax=Flavihumibacter sp. IMCC34838 TaxID=2838156 RepID=UPI001BDF00B8)

HSP 1 Score: 49.3 bits (116), Expect = 6.760e-5
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   37 ETGIGIATGNMCTGLIGKSNFRSEYALAGDVVNLAARLAASAEKEKKGVLCDEATLKSLVG 219
            +  IG+ +G    G++G    R +Y + GDVVNLAARL+   +  K+GV CDEAT+K   G
Sbjct:  351 DNSIGVTSGRAFCGILGNDLLR-QYTVIGDVVNLAARLS---QLRKRGVCCDEATMKGATG 407
[Close]
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Match: D2VCL0_NAEGR (Uncharacterized protein FM146 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL0_NAEGR)

HSP 1 Score: 48.9 bits (115), Expect = 9.280e-5
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   16 SQLRFKRETGIGIATGNMCTGLIGKSNFRSEYALAGDVVNLAARLAASAEKEKKGVLCDEATLKSLVG 219
            SQL  K   G+GIA+G    G +G S +R E+ + GD VNLAARL   +EK    VLC+E T + L G
Sbjct:  409 SQLGMK--FGLGIASGKCFIGNVG-SEYRKEFTIYGDKVNLAARLMKESEKNDGVVLCEEETAQMLKG 473
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LQG0_ECTSI1.080e-3280.00Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A835YYC7_9STRA7.100e-1556.52Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A061RLZ7_9CHLO1.390e-544.26Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A7S1SUT1_9CHLO1.400e-552.00Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A061RZX5_9CHLO1.420e-544.26Guanylate cyclase n=1 Tax=Tetraselmis sp. GSL018 T... [more]
A0A061RBI5_9CHLO6.560e-548.98Guanylyl cyclase n=1 Tax=Tetraselmis sp. GSL018 Ta... [more]
UPI001BDF00B86.760e-544.26AAA and adenylate/guanylate cyclase domain-contain... [more]
D2VCL0_NAEGR9.280e-547.06Uncharacterized protein FM146 n=1 Tax=Naegleria gr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1063500..1064246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylyl cyclase class-3/4/guanylyl cyclase
Ec32 orthologEc-10_005510.1
Exons2
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.5331235-CDS-D-herbacea_F_contig11:1063499..10636381622927508.5331235-CDS-D-herbacea_F_contig11:1063499..1063638Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1063500..1063638 -
1690790207.288856-CDS-D-herbacea_F_contig11:1063499..10636381690790207.288856-CDS-D-herbacea_F_contig11:1063499..1063638Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1063500..1063638 -
1622927508.5455513-CDS-D-herbacea_F_contig11:1064145..10642461622927508.5455513-CDS-D-herbacea_F_contig11:1064145..1064246Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1064146..1064246 -
1690790207.2979083-CDS-D-herbacea_F_contig11:1064145..10642461690790207.2979083-CDS-D-herbacea_F_contig11:1064145..1064246Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1064146..1064246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.861.1prot_D-herbacea_F_contig11.861.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 1063500..1064246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.861.1

>prot_D-herbacea_F_contig11.861.1 ID=prot_D-herbacea_F_contig11.861.1|Name=mRNA_D-herbacea_F_contig11.861.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=80bp
MIVKSSQLRFKRETGIGIATGNMCTGLIGKSNFRSEYALAGDVVNLAARL
AASAEKEKKGVLCDEATLKSLVGEVRARA*
back to top

mRNA from alignment at D-herbacea_F_contig11:1063500..1064246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.861.1 ID=mRNA_D-herbacea_F_contig11.861.1|Name=mRNA_D-herbacea_F_contig11.861.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=747bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1063500..1064246- (Desmarestia herbacea DmunF female)
ATGATCGTAAAGTCGTCGCAGTTGCGCTTCAAGCGAGAAACCGGCATCGG
CATCGCGACCGGCAACATGTGCACGGGTCTCATCGGAAAATCAAACTTCA
GGTGGGACACTATTCGCAGCACGTCGTGAGCTGTAGCTGGCCGTCTTTGC
GAATTGGCGCCGTAGGGAACCAACCAATTTGATTTCCCCCTCGGCAAGTT
ACCTCATTAGGCCACTCGCAACGTTAAACGGCATAAGACCCTCACGTGGT
AGCTGAATATAATTCAGTAGCCAAGCGTTGAAGACGAAAACGTCGCGCGC
TTGCTTTTGGTGAGTATCCTGGTCGTGTAACTTACTGTAAGTTAACACCG
ATTCGGTGCAAGCGGCGAGAAGGATGTGTTTTGAGAACAGCAGCGCTCGA
AGCAAACACTCCGAGAGCAGCGATCGGTATCTTGCGAATGCGGTAGGCCA
CCCCACAGCGGCCAGCGTACGCCGCGTTGAAATCTGCAGTGGTTGGTGAC
CAACCATATTGCGGTTTCTGCAGCCCCATCACGTATACTATTGCTGCGAG
ATTACGTATGAAAGTGTCATCTTGCTACCCGTTTTCTCTTCACCTCTACT
CGAAACAGATCGGAATACGCCCTAGCCGGAGACGTTGTAAATCTTGCGGC
GAGGCTTGCAGCCTCGGCAGAGAAGGAGAAAAAGGGCGTGCTGTGCGACG
AGGCCACCCTCAAATCTCTCGTTGGAGAGGTGCGCGCTAGGGCTTAG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1063500..1064246-

>mRNA_D-herbacea_F_contig11.861.1 ID=mRNA_D-herbacea_F_contig11.861.1|Name=mRNA_D-herbacea_F_contig11.861.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=480bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1063500..1064246- (Desmarestia herbacea DmunF female)
ATGATCGTAAAGTCGTCGCAGTTGCGCTTCAAGCGAGAAACCGGCATCGG
CATCGCGACCGGCAACATGTGCACGGGTCTCATCGGAAAATCAAACTTCA
GATGATCGTAAAGTCGTCGCAGTTGCGCTTCAAGCGAGAAACCGGCATCG
GCATCGCGACCGGCAACATGTGCACGGGTCTCATCGGAAAATCAAACTTC
AGATCGGAATACGCCCTAGCCGGAGACGTTGTAAATCTTGCGGCGAGGCT
TGCAGCCTCGGCAGAGAAGGAGAAAAAGGGCGTGCTGTGCGACGAGGCCA
CCCTCAAATCTCTCGTTGGAGAGGTGCGCGCTAGGGCTTAGATCGGAATA
CGCCCTAGCCGGAGACGTTGTAAATCTTGCGGCGAGGCTTGCAGCCTCGG
CAGAGAAGGAGAAAAAGGGCGTGCTGTGCGACGAGGCCACCCTCAAATCT
CTCGTTGGAGAGGTGCGCGCTAGGGCTTAG
back to top