mRNA_D-herbacea_F_contig11.855.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.855.1
Unique NamemRNA_D-herbacea_F_contig11.855.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig11.855.1 vs. uniprot
Match: A0A6H5KBT7_9PHAE (EGF-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT7_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 9.290e-64
Identity = 128/244 (52.46%), Postives = 160/244 (65.57%), Query Frame = 1
Query:   16 AGDIKILREEDVSAPKDWDKNNIGGSALRLQFFLRSGVFQDPEFVFAIRIPPVHPPSKSSGKEPSTPDVVADGD--TLEAERSAFSALLRADVGKALGVSMKSVSVEGVAPAREVSVDLWSWRQWALGSLNVSVVVKNDDPNVFGVTLFSAWNDPASRLHAGAVTGLIDFAQGAKVT--VLSESEHGVHGVVSSRPQSEDFKGPGMLATFLYIACFALAVPACGVSRRRWSRRKRASAASSGGG 735
            AGDIK+L E+D+   K        G  + +QFFLR G F+DPEFV AIR P V PPS  + +     DV+       L+ + +AFSALLR+DVG+ALGVSM  V V GV PA E  VD  +W QW  G+LNVSVVV +D P   G  L SAWN+P+SRLHAG +TGLIDF++GAKVT  VLS +     G  ++     DF GP +LATFLY+ CFALA+PACGVSRR  SRR++ ++ SS  G
Sbjct:  256 AGDIKLLLEDDIPMLKSTAAT-CNGCGVGIQFFLRPGSFRDPEFVLAIRTPRVLPPSDGNTENG---DVIPSSRIAALDEQGAAFSALLRSDVGQALGVSMNVVEVGGVTPAGETLVDWGTWEQWGTGALNVSVVVDSDAPEETGRRLLSAWNEPSSRLHAGTITGLIDFSRGAKVTAVVLSTAAFSRKGGTAAN----DFNGPTLLATFLYVMCFALAIPACGVSRRFCSRRRQGNSFSSNAG 491          
BLAST of mRNA_D-herbacea_F_contig11.855.1 vs. uniprot
Match: D8LQG6_ECTSI (Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG6_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.180e-62
Identity = 125/241 (51.87%), Postives = 159/241 (65.98%), Query Frame = 1
Query:   19 GDIKILREEDVSAPKDWDKNNIGGSALRLQFFLRSGVFQDPEFVFAIRIPPVHPPSKSSGKEPSTPDVVADGDTLEAERSAFSALLRADVGKALGVSMKSVSVEGVAPAREVSVDLWSWRQWALGSLNVSVVVKNDDPNVFGVTLFSAWNDPASRLHAGAVTGLIDFAQGAKVT--VLSESEHGVHGVVSSRPQSEDFKGPGMLATFLYIACFALAVPACGVSRRRWSRRKRASAASSGGG 735
            GDIK+L EED+   K        G  + +QF LR G F+DPEFV AIR P V PP  ++    + P   +    L+ + SAFSALLR+DVG+ALGVSM  V V GV PA E  VD  +W QW  G+LNVSVVV +D P   G  L SAWN+P+SRLH+G +TGLIDF++GA+VT  VLS +     G  ++     DFKGP +LATFLY+ CFALA+PACG+SRR +SRR+R ++ SS  G
Sbjct:  733 GDIKLLLEEDIPMLKSTGTTKCNGCGVGIQFLLRPGSFRDPEFVLAIRTPRVLPPDGNAENGDTIPS--SSIAALDEQGSAFSALLRSDVGQALGVSMNVVEVGGVTPAGETLVDWGAWEQWGTGALNVSVVVDSDAPEETGRRLLSAWNEPSSRLHSGTITGLIDFSRGAEVTAVVLSTAAFSRKGGTAAA----DFKGPTLLATFLYVVCFALAIPACGMSRRFFSRRRRGNSFSSSAG 967          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBT7_9PHAE9.290e-6452.46EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
D8LQG6_ECTSI1.180e-6251.87Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:969698..982522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue3e-56
Seed eggNOG ortholog2880.D8LQG6
Preferred nameKEX1
KEGG koko:K01288,ko:K09645
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000322,GO:0000323,GO:0000324,GO:0000746,GO:0000747,GO:0001906,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005802,GO:0006508,GO:0006518,GO:0006807,GO:0006915,GO:0007039,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008236,GO:0008238,GO:0008277,GO:0009056,GO:0009057,GO:0009058,GO:0009405,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010515,GO:0010646,GO:0010648,GO:0010720,GO:0010969,GO:0012501,GO:0012505,GO:0016485,GO:0016787,GO:0017171,GO:0019538,GO:0019748,GO:0019835,GO:0019953,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0030447,GO:0030448,GO:0031135,GO:0031137,GO:0031138,GO:0031640,GO:0031984,GO:0034305,GO:0034641,GO:0035821,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0043937,GO:0043938,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044364,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0044764,GO:0045595,GO:0045597,GO:0045744,GO:0046937,GO:0046938,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051603,GO:0051604,GO:0051704,GO:0051715,GO:0060238,GO:0060240,GO:0060284,GO:0065007,GO:0070008,GO:0070011,GO:0071704,GO:0075306,GO:0075307,GO:0090029,GO:0098791,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903664,GO:1903666,GO:2000241,GO:2000242
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.6
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons5
Model size736
Cds size735
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.855.1prot_D-herbacea_F_contig11.855.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 969698..982522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.357304-CDS-D-herbacea_F_contig11:969697..9699071622927507.357304-CDS-D-herbacea_F_contig11:969697..969907Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 969698..969907 -
1690790206.651305-CDS-D-herbacea_F_contig11:969697..9699071690790206.651305-CDS-D-herbacea_F_contig11:969697..969907Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 969698..969907 -
1622927507.368795-CDS-D-herbacea_F_contig11:970867..9709901622927507.368795-CDS-D-herbacea_F_contig11:970867..970990Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 970868..970990 -
1690790206.669644-CDS-D-herbacea_F_contig11:970867..9709901690790206.669644-CDS-D-herbacea_F_contig11:970867..970990Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 970868..970990 -
1622927507.379969-CDS-D-herbacea_F_contig11:976826..9770631622927507.379969-CDS-D-herbacea_F_contig11:976826..977063Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 976827..977063 -
1690790206.6794996-CDS-D-herbacea_F_contig11:976826..9770631690790206.6794996-CDS-D-herbacea_F_contig11:976826..977063Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 976827..977063 -
1622927507.3908489-CDS-D-herbacea_F_contig11:979452..9795421622927507.3908489-CDS-D-herbacea_F_contig11:979452..979542Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 979453..979542 -
1690790206.688896-CDS-D-herbacea_F_contig11:979452..9795421690790206.688896-CDS-D-herbacea_F_contig11:979452..979542Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 979453..979542 -
1622927507.4050462-CDS-D-herbacea_F_contig11:982447..9825221622927507.4050462-CDS-D-herbacea_F_contig11:982447..982522Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 982448..982522 -
1690790206.703255-CDS-D-herbacea_F_contig11:982447..9825221690790206.703255-CDS-D-herbacea_F_contig11:982447..982522Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 982448..982522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.855.1

>prot_D-herbacea_F_contig11.855.1 ID=prot_D-herbacea_F_contig11.855.1|Name=mRNA_D-herbacea_F_contig11.855.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=245bp
VAAARAGDIKILREEDVSAPKDWDKNNIGGSALRLQFFLRSGVFQDPEFV
FAIRIPPVHPPSKSSGKEPSTPDVVADGDTLEAERSAFSALLRADVGKAL
GVSMKSVSVEGVAPAREVSVDLWSWRQWALGSLNVSVVVKNDDPNVFGVT
LFSAWNDPASRLHAGAVTGLIDFAQGAKVTVLSESEHGVHGVVSSRPQSE
DFKGPGMLATFLYIACFALAVPACGVSRRRWSRRKRASAASSGGG
back to top

mRNA from alignment at D-herbacea_F_contig11:969698..982522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.855.1 ID=mRNA_D-herbacea_F_contig11.855.1|Name=mRNA_D-herbacea_F_contig11.855.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=12825bp|location=Sequence derived from alignment at D-herbacea_F_contig11:969698..982522- (Desmarestia herbacea DmunF female)
GTGGCGGCCGCGCGTGCTGGGGATATCAAGATTTTGCGTGAGGAGGACGT ATCAGCGCCCAAGGATTGGGATAAGGTGTGTGCGGGAAGCGTGTTGATCG TTTGGTGTCGGCGGGTGGGGACAGGGTGGGCGGGGGGGGCAGCTGGATAT ATATTTATCACGGTGGCCCCTAATAAATAGCCCACAATAAGCCTCAACAC CCACGTTGGCGCCCGCATCTTACGAAGTGCCACTACGTTAATCCCGGGTC CGATTCGTTTAAACAACGCGGTTGATCACAGGCTTTCCATCGATGCCATA CTTGTGATATTCAGATAGTAATTGGGGCAAGGGTAAGGGTAGACCTTCTC CCGCCTTCTCCCTTTTTCGGGCCTATTTATTAGGGGCCACCGTGATATAT ATTTTTTGCTGTTCCTGAGTTGCGTTTGTGCTGTTGTGAAATGGATAGTA CGAGTATGGTAGTGTTGTAGTTGACGTTTACAACGTGTTCAGCGGCTGTT TTTTTTTTTTTTTTTTGCTGTTGTTGTGGTGTGGTCGTTAGGTTATATAT CGGATTAGGGTTAGCTTCTGTCATAGTAAACGTTCCGAACTGCTGAATAG CCCGCGTTTGGTATACTGTATTTAGTATAATAAAACGAAGATCCTGTACA TCTCTCATCAAGTTGTAAAGCAGGCTCGAAGTGGACGATGTTGTCGAGGA CAACGGCTGTTTTTTCTGTCTAGTGCGCGTGCGTGAGAGCGTTGTTGGGT AGGTCGGTACCGGAATAGGTGGGACAATCGCAAGCCATGCGATATATTCC AGTGCACACGATGATGGGGCCTGTTTCCCAAAATTATCCTGTAGAGCCTG GGACACCCCAGGGGAGCCACTGCGTTATAACTTATCTGAGGACCGATAGA ATCCGCGCGACCGATGTATCACAGAGTGAGGTTGACGATTATCCCCTGGC CCCCGAACCAGTTTGGAACGTCACGGCTGATGTCTTTGTAAGAAAAAATA TATATTTATACGCCGATAACCGCTGCTATGGTCTAAATGGCGTTACAACC GTAGAAGGGGGGGGAGGCGTGGTGGTAATGTGGTATGAATCGTAGTACGC TGTGTATTTTGTTTGATTTTTGTTGGTGTCAGGGTTAAGGTGTCCGTCAA CCCGTCCCTTCGCCAGCACGGATCATTTATTTTGTGATTTTTGTTGTTGT TAGGTTTCCGCGAGAGCGCGAGAGACAGGAGGAGATCGATGATACATCCA TCCAATGCCCTCCATCAATGGATTGGATTGATGTTAACTAGAAGAAATAT CATCGTACTTGTATCCCGTAGTCGTGATGTGTGTGTGTGTGTGTCGTGTG TGTTTCCCCCCTTCTTGTTTCCCAGCGAGTGTGTTTTTCTGTTGTTGTTG TTGTTTTTTTTGTTAGTCTCTCTTCCGGATGGGTAGCAATAAAACGTGAG CTCCCAATCTTTGCCACAGCCACGAATGATGGCTTCGTCTGATTGCGGAA TTTTTACCCTGATCAACCATTGTAGAACCACTTGTAGTAAAATATAAGAA AATGAAAAAAAACGAAAATCGCCCTGTTTTTTTTTTTTTTTTTTTTTGTC CGTCCCATTTATTATCTTCGCCCTAGTCTTACTCTAGCTCCATCTCTCTT CGTAACTCAGATCCGGGGTCACATAGTAGGCGCTCCTCCCTCCTTCCCAC GACGGTACGTGCCTACATTTTTATCGCGAGAAGAGTGCAGCACTTTCTTC CCTCGTCGACTTTCATCGAATTGTGCTTACTCACGCTCTCGCGTTTTCCG CGACGGAAAATGACACAGAAAAGTGCCACCGGGAATCGAACCCCCAGCTT CCGCCAACAGAGGAAATACCCTAGCCATTACACCACTGGGCCACCAAATG CATGGGAAAAAAAACATTTTCCACACGATTTCCCCCCCAGAACGATTTTC TTTTTTTTCTGTTCAAAACCACTTTCAAAAATAACAAAAAAAAAACGAAA ATCGCCCTGGGGGGAAAATGCATGGAAAAAAACAAGGTTGTCCAACACGC GATTTCCCCCCAGGACGATCTCTTGTTTTTTTTTTATTCTTAATGCAAAT GATTTAAGAAAAAAAAATAGGGGGGAAGTGCATGGGAAAAAACATGTCCA CACGCGATTTGTCCTCCTTTCCACTAAAAATAATTAATTATTTTATCTAT TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT ATTTTATGATTTCCCCCACGGACGATTTTCGTTTTTTTTCTTCTTTCTTT CCTTATTGAAGTGGTGTATTGCGGACGACAGAGGCCCCTCTACTGCTAGT GGGGTATAAGGCACTGGAGCTATGATAGTCACTACGGGAGGCAATGTTAC ACCTCCCGCTTCGGCAGTGTATGCGCAGTTGCGCCCTTGTAGTACTTGTG GCAAAGGCGGAAGAGAGTAGAGATCACGTACTATAGTGGGAGAATGTGAA CTGTACAATGAGGAACAGGATGGATGATGGATGATGTGTTGGAGGACGAG ATGAGGACATTAGACGGATGATGGATGATGGATGATGTGACATGGACAAG TTTGGTACACTAGACAATAGCGAGAAAACGATCGCTATCCTAGGAGATAG ATGGTGGCCACAACAACAACAACAACGAAAAACCGAACAGGAAGGGGATA AGATAAGCAAATCGTTTAAGTGTAAGATATGGATCAAACGTAAAGAGCGC CCAAACAATGGTTGAAACAATGGTTGAAACAATGGTTGGAGGTGTATCTA TTAGGAGTAGGAACGGTGCTCCGTCTCGAAAGGGATGCGTGGTCAATGGT CATACGACTAAGGCAAGCAACAAATGAGTATGAGCACCCCCCTCCCCCCC CGCTATTTATTATTTCCGCTGTCTCTGCAGAATAACATTGGAGGGAGCGC GTTAAGACTGCAGTTCTTCCTTCGGTCAGGGGTGTTCCAAGACCCCGAGT TCGTCTTCGCCATTAGAATCGTGAGTACCCCGCAGCAACATAAACAAACG TCTGCGCCGTTCGCAAGTGGGCGTGGCAGCAAAATCAATGTTACCGACGG CATGTTTTTTTTTTTTTTTTGTGTTTTTCGTAATCACTTTTACTGTACCG ACGGCATATTTAGTAATTTGATATTTCGGGTGTTTCATTTTTTTTTTTTT ATCAACGGCGTATTTTGGTGTGTTTTAATCGTTTATACCGACGGAATATT TGGTGTTTTCTTATCACGAGGGGCCCCTAATAAACAGGTCCAACAAAACG CTTATATTGACGTGTGTATCGCGAGACAAACGTCAGCGTGAAGCACGGAT CTCGTTCGGTTCTATCATGCGGTGGCGGTAGACTTATCAACGATGCTACA CGTTCATCCTTCGGGGGGGGGGGGGGATCGGGGATGAGGATACTTGCGCT CACTCTGTTTCACCGTGTTTTGGGCCTACAATGGTTGTTATGGGCCTCTG TACTAGTATTTTTTTACGGACGGCATGCTTTTTTTTTTTTTTATCAGTTG TACCGACGGCATATTTTGGGTATTTCCATATTTGTTACCGACGGCGTGTT TGGTGTGTTTATAATAATTTTGCCAGAATATTTGGTGTTTTCTTGATAAT TATTTTCGGATGGCATGCTTGGTGTGTTTAGTAGTAGTAAGGTTTACGGA CGGTATATTTTGGTGTTTTTAATCTTTTTTTATGGATGCCGTGTTGGGTG TTTTCTTTTGCATCTTTTTACCGATTGCATGTTTGGTGTTTTCTGAATAT TTATTACCGCCGGCATGTTTTGTATTTGTGATATTTTTACGGAGGGCATT TTTGCGTGTTTTTGATGTTTTTGACCGACGGCATTTGTGATAATTGTAAT ATTTTTACCGAGGGCATGTTTTGTGTTGTGTGTTTTTAATCTTTTTTTAC CGGCGGTATTTGTTATAATTGTAATATATTTGCCGACGGCATGTGTTGTA TTTTTTGAGGGAAGGGCAGTACGCCGTCGACCGCACGCTGTAGTACCCGT ACCGTCTGTAATGAGAATAACATACTCGTAGAAGTCGCGATATTTTGTAT GCAATTCATATACTTTTAGTGTGAGAACAACAATGATAACCGCAAAATAA AGTTCAACCATGGATGTGTTCTCGTTTATATGTTTTGTAGGGTGGTATGC ATGGTCGACCGCCCGTTACTTTCACATATCGCTCGTAGCAAATAGCGCGC GTTAGAACGAACAAGCCTGCCGTGGGACCGTTGGCGAAATCAAGCGTCAC CGCCTCCGCGTCTCAAGCAAACCCTGCCGCGGAATCTCGTCATTTACACC TCGTACCCCCCGGGGGTATCGAGCCGCTTTAGCGCTTTTTTTGGTAGGAC AGGACCTTCAAGATATTCGTTTTTTTATTTTAATAGTTAGTAACAACGTG GGCTGTTGAGCAGTTTCGGAAAATTCTACGAGAAACCCTGACCCGAACTC TCACGATAAATATATAATATACGAAGTATATAACACTGCACTAGAGTCAT GCTACGGTAGGGGGGGTACTTTTGGGCCCTAAAATGCTCTGACTGATGGG GCTCTTCAACTGAGGAACTACCCAATATCTTTGAAATTTCGTTGCGTGGT GTACCTTTTTATTGGAAATATACGTGGCCGATGGGAATGTTGATCGGCTT GCGCATACGTAGTTTGTCCAAGGCGGGTTTTGGTTGAGATGTAGAGCTCT TCAAGTGAAGAGCCTCAGAAAATTTGGGTACCCCCCCCTATACCGTAGCA TGCCTCACTAATAGAGAGTCAAAACCTCCGTAAAGTTCCTGCAAATTTCC TACAACATCAACCATTGTTGGTAAAGCCTACTGCCGGTTATCACACTACC CGGAGTCGTCACTTTTTCTGTTGGGCTCCGCCATGGATCCATCCAGCCGT CGATCCTCGGGCAAGGCCGGCAAGTATGTCCGGTGCACGACCCCGTAACA CCGTTTCGCGAAGCAAACGATCCACACGACGACCATGGCCTAAGGGGGGG GACGAGGTTAGAGGGACGGTACAACGGTACCCGCGCAGCGATACTTTATG GCCCGCATTTGCTTCCGCAAATTTTGTGTTGGTTGCCTCTGCGGTTCCCC CCCCCCCCCCTGTCTCCAAGGCAAAACTATAACGGGGTAAGATAGGCGAA AAACAATTGTGTAAGATATGGAAAAACCGTGAAGAGCGCCCAAATGTTGC AGGTGTCTTTCTCTGTTACTGTAGGATTATAAACGGTGCTCCGTCTCGAA AGGGATGCGTAGTCAATGGTCGAATGACTAAGGCAAGCAAAACAAATGAG TACCCCCCCACCCCCGCCACCCCCGCCCGCCCGCCCTCACCCCGTCCCCC CCCCCTCAGCCACCGGTCCACCCGCCTTCAAAATCGTCTGGGAAGGAGCC GTCCACGCCAGATGTAGTGGCCGATGGAGACACGTTAGAAGCGGAACGAT CGGCGTTTTCTGCTCTTCTGAGAGCCGATGTCGGAAAGGCGCTCGGGGTT TCCATGAAGTCGGTTTCGGTGGAAGGCGTTGCTCCTGCGCGAGAGGTGTC CGTGGACTTGTGGTCTTGGCGGCAGTGGGCGCTTGGGTCGTTGAATGTGA GTTCGTGACGTGGGGGAGGTTGGTGGAGTGGGGTGCGGAGGGTAGGTGGC AAGAGATTTACGGGGGTGTTCGTGTTTGTAGGATGGCGTATCCTTGATTT TGGAGGATTGTGAAGCCTTTCGGGGTAGAAGGAGGGAGGGAGGGGGGGGG TGGGGGGAGCGCAAAACGTATGTGTCGATATGTGTGATGTGTCCTCCCCG CCTCGCAATAATGGATTATTTAATTAATATTTACAATTGCCTGTAAATAT GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGAAAATAAAGGT ACAACGTAGAGGTAGACTGGGATTATTACCATCCGTGTCAATAATTACTG ATATAATACTCGTTGCCAATTTCTATTAATAATAATATTATTATTATTTT GACTGCCAGCTGACATTTTACGCGTGACGTTACGCCTGGAACAAAGAGGA GACGTCTGTACATCATACATCACGGTAATGTTTTGTGATATAATTCGCTT GCATCACGCTTATTATAACAAGTATACAGTACAGTATTAATAGTGTGTGG TGAGGCTGGTGGTGCAGCCGGACATCGACGGATGTCAGAGTGTTTTACGT TACAAGCACGTATCACGGTGGTATACGCTCGCGCATCCGCACGCAAGGTT ATGTTGCGGGGTTGCGGGGGTGGGGGGTGGCGCAGCAGCTTAACCGGGCA GTATTGAGCCGTCTTAGCGTGTCTGTTTTTGTAGGGTGGGTCTTTCTTTT TTTCGTTTTATTTTTACTTTTCTTACAAATAGATAGAATCAGCCGTGACG CTCCAAACTGGTTCGGGGGCCAGGGGATAATCGTCAGCCTCACTGTGTGA TACATCGGCCGCGCGGATTCTATCGGTTCTCAGATAAGTTATAACGCAGT GGCTCCCCTGGGGTGTCCCGGGCTCTACAGGATAATATTATTTCGTTTTA TTATATGATCAGTACCAACGTGGGCTGTTCAGCAGTTTCAGAAAATTTCT ACCACTAACCCTAACCCCTAACCCTAACGAACACACCTATACTAATAGCA AGTAAAAACCTGTGTAAAGTTCTTGTAAAGTTCCGTCCTACAACACTGCT AAGCCTTTTGGCAGTATTGGCTCATCTATCGACCGAATATATATATGTAT ATTTTGCTCTGTTATTATGGTGTGGTCGCTAATGTGGTCGTTATTGTGGT CGTTAGTGTGGTCGCTGGGGTTAGCTCTATACTCTATACATTGTTCCGGA CTGAAGAGCCCACGTTGGTTTGGGTTAGGGTCAGGGTGGGGGTTAGTGCT ATTTTTTTTTTTTTTCCGCCCCATTTATTATCTTACGCCCTATTCTTTCT CTAGCTCCATCTTTCTTCGTAACTCAGATCCGGGGTCACATAGCAGGCGC TCCTCCCTCCTTCCCACTACGGTACGTACCTACTTTTTTTAGCTCGAGAA GAGTGCAGCGCTTTCTTCCCTCGTCGACTTTCATCGAATTACGCTTACTC ACGCTCTCGCGTTTTCCGCGACGACGGAAGATGGCATAGAAAAGTGCCAC CGGGGATCGAACCCCCAACTTGCGCCAACAGAGGCAAACACCCTAACCAC TAGACCATTGGGCCACCCCTGTCTATGAAGTATAATAAATAATAAAACGA GCAGCCCATGAAAGATGTGGTCGATAGAAGATGCGAAGCGGCCTCGCTAA ATAAACCCCCTTCGACAGCATGTTTTGCCTTACAATAACAGTATCATAAG CGCTTTACCAGTTAAGACGAAAAGTTATGGTTGGCCGTACACAAACTCTT ATCTCAACAAATTCCGGGAGCTTACCAACCTCACGAAAGGCTCGATATAA GAACGACACAGAGCTAAAGCCGTGCTTCGTTGATTTCAGCTCCGAAGGCA TGGATGTTTTTGCCCCGCTGACTGTGCCGTAGGGTTGGGGTTTGGGTCGG CTGGGCACAACTTGAAGTCAACGAAAAAAAGGGTCTGTCAAAGCCATACT ATCACGAGGGCCCCTAATAAATAGGCCCAAAATACTTATTTTATTGACGT GTGTATTGCGAGATAGACACCGATTGAATCCCGAATTTCGTTCGCGTTCA TCATACGGCGATCTTCGACTTGCCAACGATGCTGCATTTTCATTGTTCTG GGTGGGGGCGAGCCATGCTACGGTAGGGGGGGGTACATTTGGGCCCTAGA ATGCTCTGAGTGATGGGGCTCTTCAACTGAGGAACTACCCAATACCTTTG AATTACGTGCGTGATGTACCTTTTTTATTGGAAATATACGTAGCCGATGG GGGAACGTTTATCGGCTTGCGCATACTTATTGTGTCCAAGGCGGGTTTTG GTTCAGATATAGAGCTCTTCAAGTGAGGAGCCTCAGAAAATTTGGTTACC CCCCCTACCGTAGCATGCCTCGGGCGGGATCGGGAAGGATACTTGCGCTC CCGCTGCTCCTCCTTGTTTGGGCCTATTTATTATGGGCCTCTGTAAATAT TAGTTTTTTTTATCTATAATTGGTATAGAGCCCTCTACATTTCGTGCGTT TGCCATTGTCGAGCCTGCTTTGTCTCTGCGTAGTGACGAACAGTGATTGT TGCTACCCTGCGGATCAAAGTTTTTGCGAGCAGGACGAGGCGTGCACTAC CACAGACTGGACGGCTGCGAGAAAAGGTTTTAGGAGCGGGCGTAGGGCTC CCCGTCATACGAGTAGGGTTAACATTCAAAATCCCCCACGAGCACGTCGG GTGTGAAACTTGAACGATGATGCTGTTGTGCAACGCCTTGAACGGAACCG CCAGCGATTGCGGGGAAGTGATCCGGGGTATGCCGAAGGGTTCCGTCGTG GGACCGGAGCGTGAACGCCCCCCCCCCCCCCACCCTAATGCTGGGGAGTT TGAAACTCGATTAATACAGTACAGTATGTACTAAAAATGTATATTGATTG TTCTCTAATAATGAACTATTTAATATCATATCACGGTGGCCCCTAATAAA TAGCCCACAGTAAGCCCCAACACCCACGTTGGCGCCTGCATCTTACGAAC TGCCACTACGTTAATCCCGGATCCGATTCGTTTAAACAACGCGGTTGATC ACAGGCTTTCCATCGATGCCATACTTGTAATATTCAGATAACAATTGGGG CAAGGGTAAGAGTAGACCTTCTCTCGCCTTCACCCTTTTTCGGGCCTAAA TTATTTATTAGGGGCCACCGTGACGTTTTTCCACACCTTGCTGAACACGA AATCGCCCAAGCTCGATCCAACTATCAGCGAGCAGTTCCCACAACGACCC TTAGCACCTAGCCTTGGACTAGAGCCGACGATGGAGGAGATGGTGGAAGC AATCGGCGGTATGGCAAACTGGAAGGCGGTGGGACCAGACTCCCTACCAG TCGAATTGCTGAAGCTCGACAACACCCAATTCCGTTGGAACTTCCATAGC ATCCTTGTCAGCGTGTGGCGAACGGGGGAAGTCCCACAGCAGTGGAAGGA CGCCACGATCAAAGTCCTCCACAAGAAGAAAGATCGCTCCGACTGTAACA ATTACAGAGCGATCTCGCTCGTAGCCCACGCAGGCAAGGTTCTTCTCAAA ATTGTCTCAGCTCGCCTCAGCGCCCACTGTGAGATCGAGGGGATACTCCC GGAGGAGCAGTGCGGGTTTCGCCCTGCACGGTCAACCGTTGACATGCTGT TTGTAGTACGCCGACTGCAGGAACTCGGGCGAGAGAGGAAAATCCCGCTG TACATGTGCTTCATCGACCTCCAGAAGGCATATGACTCCGTCGATCGAGA GCTGCTCTGGGAGGTGCTTCGTCGCTTCGGGGTACCGCCCTCGATGCTCA CAGTTGTCCGCCAGTTCCATGACGGCATGCGGGCCCGCGTACGTACGGAC GACGGCGAACTCTCAGAGTGGTTCAATGTGACACAGGGGTTACGGCAAGG ATGTGTACTATCGCCTCTGTTGTTCAACATCTTCTTCGCTGCGGTATTAC ACGTTGTTCTGGTGCGCTTTAGCGAAGACGTGAACATACTTGCCAATCTG GTTCACCTCAAGGGGGACAGCGGGGGGGGTACCAACGAGTCTCCACTCGA ACGGGTACGGAGATCTATATGGGGCATGCTTTACGCAGATGACGCTGGTA TCGTATCGACGTCGCCGGAAGGCCTCGCGAAGATGATGACCGTCATTGTG ACAGTGTTCGAGGCGGCCGGCCTTACTGTTTCGGAGAAGAAAACAGAGAC CATGATGGTACGGACACCGAACGAGACACCCCTGCCCGCACCGTTGGTAG TCGAAGCGGCCGGCCAGAAGTATAAGCAGACAAGCCAGTTTGTCTACCTG GGCGGTGCTGTCAATGAAAACGCCGACATCACGCCGGAGATCGAACGCCG GATTCAGCTCGCATGGGGATGCCTCAGAAGGTACAGACGGGAGTTATACG ACCGACCGACGGCTCCGTTTATGCTGAAGGTGCGTATGCTAAAGGCGGAG GTGATAGAAACCATGCTATACGGATGTGTGACGTGGACACTTAACCAGCA GCATTACGCCAAACTCCGCACGGCACACCACCGTCTTCTCCTACGAGTTA TTGGCTTCCAACGCCCAAAAGGCACGGGCCGTCTGATGTCATACGCGAAG ACCCTTAGGAAGACCCACTGTGAGAGCGTCGAAACGACTATCCGTAAACG GCGACTTCTCTTCGCGGGGGCATCGCGAGGCAGCACAGCGGGCGGCTACC ACGACGGGTGATGCTTGGGAGTCTGGCCGGTGGGGAGAACCCGGGACGCG GTAGACCGGCCAAGAACTGGGCCCAGTGCCTCTCGGATGATTTCCAAGCT TTCGGTGCCATCACGAGGGGGAGTCGACGGAGAACGCGTCCCTGGTGTTT GGAGTGGAAACTGTGACGTGGGAAAGAGCGGCGGTCGAGTGGGGAAGGTG GTACAGGGGGTCATGGAAGGAGCAGAAACCTTCATGGAGACGTGGCACAA AGAGGAGGCGGCGAAGAGTAGTGCACGTCATGCGAAGAGGGCCGGGGAAG TTCGAAGTAGCAAGATGGGGACCGGGAGGGGCAGTAGTAGTAGCAAATTT ATTACTGCCGCCGATGAGAGTAAGGAGGAGATGGCAAACCGGGTAGAAAT GTTTCAGTGTGACTAACAGTCCCCGTACTTCCCTCCCGTAGCCCCAAGTA TCGTTGAGTTTCTGATCTTCGTTCTGCGTTTTGTTTTGTCTGTCTTCGTT CTGCCCCCGTTTTGTTTTGTCCTGTGGCATGTTTTGCTCGCTTCTTCTTT ATTGTTTCTTCCCATCTTTTTTTATTTTTGCTTTCTTTCTTTTTTTCTTC TTTTTTATATGTTTTTTGCGAGTTGTTTGATATGTTAGCCTGTGACCACG GAATTTCGTGTCTTTCTAGGGTGGAAGATCCAGTACAGACTCTGAGTACG CTAGTGGATGTTGTAGAGTGGAATGGACGACTTTTAATGTGAAGACAACA ACAACAACAACAACAACAACCGTGAATAGATTTATTTGTTGAAATCGGGT ATTTAATCAGAATTAGATTTATATTGTAGAAAATATTTTGAAATGATAAC TATTAATTGTTACCTTTAGAAAAAAAAAAAAAAAAGTTCGTTTCAAATGC GCACGGGGGTATATAGCCGTAGCAGAGGGACAGGAATTCTGCCTTGCTAC TTTTAGTGTTCGGTAGCACGAAGAAAAGGGATGGTTCTACTGTCGTAGTT TGATCCGCTGCCTCGGTTTGCCTTGGAAGCAGGTCTCCGTCGTGGTCAAA AACGACGACCCGAATGTGTTTGGCGTGACCCTGTTCTCCGCGTGGAACGA CCCCGCGTCCCGGTTACATGCCGGCGCTGTCACGGGGCTCATCGACTTCG CACAGGTACGTACAAACTTGTACGGTATGATTTTTTATACTGTACTACTC GTACTCGCATTGTATTGTATGCGTGTATTTTTGTGTTTTGGTGAGGCGAA AATGGAGACGCCTCGCGTCGGCCCTCGTATTGTGTTTTTTTTTCTTTTTG AGGTTTTATTAATCGTTGTTTTATGTTTATAATAGACTGCCATTTTTGTT TGTTTGTTTACGTTCTAAAATGCGTTGCCGTCTTTTTCTTTTTTTTTTTT TCTCTTTTTTTTTTTTTTTTTAAGTTAACGGTCGATTATTGCCGAGTTAT TGCTGTGTTTTGTTTATGTTATAAGTAGATTGCCCTATGCTGGAGGTTTT TAGCATCTTAGCTTAAGAAACGAACTAGCGTGCCATTTCAAACTGTTTGT CGCTTAGTCGGATGCGTCGCATGAAGGAAGAAGTTGCTGGAGAGATGTAC AGTAGTACTATTCTGTTACTACAAAATGCTGCTACTACTCGTGCTCCTTT AATAATGTAAATTATGAAAATGAGAGTGATCGCTGTGTGGAGGGCTGCTG TGTTTCCCCAGCGTTTTTTTCTGTTCCTGCTTTGCAGATGCGCTTACTCT GTTGTCTCGTCAGTCGGTACTGTCGTGTACCTGACGGTGCGAGCATGCAT GCGGACGAGGAAGAAGCGAAGCGAACTCGTGTTGACAATCATATCCACAC GGCACACGCTAAGGCACCGGCGTGTTGGGGGCAACCCTGCAGGCGCCCAA TGGTTCGCCAGGAAACACTTGCGCCTCCCGCTAGTTTAGATGCCATGAAC TATTTGATATATACTATATAAAGTGCCCTATTGGTGCTTACCCCCGCCCC CCCCCAGGAATAGGAACGGTGCTCCGTCTCAAAAGGGATGCATGGTCAAT GGTGAAATTGCTAAGGCAAGCAACAAATGAGTACTCCCCCCCGCGCGCGC GCTATGCCTACGCAGGGAGCCAAGGTAACAGTGCTTTCCGAATCCGAGCA CGGCGTACACGGCGTGGTCTCTTCTCGCCCACAAAGCGAAGACTTCAAGG GGCCCGGCATGCTCGCCACGTTCTTGTACATCGCGTGCTTTGCCTTGGCC GTGCCAGCGTGTGGCGTGTCGCGCCGTCGCTGGTCACGCCGAAAGCGCGC CAGTGCTGCTAGCAGTGGTGGAGGC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig11:969698..982522-

>mRNA_D-herbacea_F_contig11.855.1 ID=mRNA_D-herbacea_F_contig11.855.1|Name=mRNA_D-herbacea_F_contig11.855.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1470bp|location=Sequence derived from alignment at D-herbacea_F_contig11:969698..982522- (Desmarestia herbacea DmunF female)
GTGGCGGCCGCGCGTGCTGGGGATATCAAGATTTTGCGTGAGGAGGACGT
ATCAGCGCCCAAGGATTGGGATAAGGTGGCGGCCGCGCGTGCTGGGGATA
TCAAGATTTTGCGTGAGGAGGACGTATCAGCGCCCAAGGATTGGGATAAG
AATAACATTGGAGGGAGCGCGTTAAGACTGCAGTTCTTCCTTCGGTCAGG
GGTGTTCCAAGACCCCGAGTTCGTCTTCGCCATTAGAATCAATAACATTG
GAGGGAGCGCGTTAAGACTGCAGTTCTTCCTTCGGTCAGGGGTGTTCCAA
GACCCCGAGTTCGTCTTCGCCATTAGAATCCCACCGGTCCACCCGCCTTC
AAAATCGTCTGGGAAGGAGCCGTCCACGCCAGATGTAGTGGCCGATGGAG
ACACGTTAGAAGCGGAACGATCGGCGTTTTCTGCTCTTCTGAGAGCCGAT
GTCGGAAAGGCGCTCGGGGTTTCCATGAAGTCGGTTTCGGTGGAAGGCGT
TGCTCCTGCGCGAGAGGTGTCCGTGGACTTGTGGTCTTGGCGGCAGTGGG
CGCTTGGGTCGTTGAATCCACCGGTCCACCCGCCTTCAAAATCGTCTGGG
AAGGAGCCGTCCACGCCAGATGTAGTGGCCGATGGAGACACGTTAGAAGC
GGAACGATCGGCGTTTTCTGCTCTTCTGAGAGCCGATGTCGGAAAGGCGC
TCGGGGTTTCCATGAAGTCGGTTTCGGTGGAAGGCGTTGCTCCTGCGCGA
GAGGTGTCCGTGGACTTGTGGTCTTGGCGGCAGTGGGCGCTTGGGTCGTT
GAATGTCTCCGTCGTGGTCAAAAACGACGACCCGAATGTGTTTGGCGTGA
CCCTGTTCTCCGCGTGGAACGACCCCGCGTCCCGGTTACATGCCGGCGCT
GTCACGGGGCTCATCGACTTCGCACAGGTCTCCGTCGTGGTCAAAAACGA
CGACCCGAATGTGTTTGGCGTGACCCTGTTCTCCGCGTGGAACGACCCCG
CGTCCCGGTTACATGCCGGCGCTGTCACGGGGCTCATCGACTTCGCACAG
GGAGCCAAGGTAACAGTGCTTTCCGAATCCGAGCACGGCGTACACGGCGT
GGTCTCTTCTCGCCCACAAAGCGAAGACTTCAAGGGGCCCGGCATGCTCG
CCACGTTCTTGTACATCGCGTGCTTTGCCTTGGCCGTGCCAGCGTGTGGC
GTGTCGCGCCGTCGCTGGTCACGCCGAAAGCGCGCCAGTGCTGCTAGCAG
TGGTGGAGGCGGAGCCAAGGTAACAGTGCTTTCCGAATCCGAGCACGGCG
TACACGGCGTGGTCTCTTCTCGCCCACAAAGCGAAGACTTCAAGGGGCCC
GGCATGCTCGCCACGTTCTTGTACATCGCGTGCTTTGCCTTGGCCGTGCC
AGCGTGTGGCGTGTCGCGCCGTCGCTGGTCACGCCGAAAGCGCGCCAGTG
CTGCTAGCAGTGGTGGAGGC
back to top