mRNA_D-herbacea_F_contig11.843.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.843.1
Unique NamemRNA_D-herbacea_F_contig11.843.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: B5LWG9_9PHYC (Putative PCNA n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG9_9PHYC)

HSP 1 Score: 432 bits (1111), Expect = 7.120e-151
Identity = 212/285 (74.39%), Postives = 254/285 (89.12%), Query Frame = 1
Query:   10 SGKELISVGHGEEMEDSVA-ETSKKQPFHDDRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
            S K  + VGH E MED+++ +   +QP H+DRKLI L+RTSQC QFKSL ECLKELLT+VN+EFIE KGIRLVSIDPG +AMVHLV+N+VEYFY  GT+TAG+NMAFLY+MIRSLSSGDYMEWRIYED+PH M IEL N++RRT+T++++ LLDLDEV ISIP+VE+DRVVSMPSSEL+KHVREMVA+SNF+T+RGT+STLEF+++G+MASSHITI PTASGLNWK SEDV DIEGKFVV+YLEKF +  VE+NVE+FLK ++PLI RYELSIGTLRFV+APVKD
Sbjct:    2 SSKIPVDVGHAETMEDTLSVKNPVQQPMHEDRKLIFLMRTSQCAQFKSLCECLKELLTDVNMEFIENKGIRLVSIDPGRVAMVHLVVNSVEYFYVKGTVTAGMNMAFLYRMIRSLSSGDYMEWRIYEDNPHAMNIELYNSDRRTRTVSSMKLLDLDEVEISIPNVEYDRVVSMPSSELSKHVREMVAVSNFVTVRGTRSTLEFIAEGEMASSHITIHPTASGLNWKFSEDVGDIEGKFVVRYLEKFGRVGVEANVELFLKTDFPLILRYELSIGTLRFVIAPVKD 286          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: Q6XM81_9PHYC (FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM81_9PHYC)

HSP 1 Score: 392 bits (1007), Expect = 2.530e-135
Identity = 191/263 (72.62%), Postives = 235/263 (89.35%), Query Frame = 1
Query:   76 KKQPFHDDRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVED-IEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
            ++QP  D RKLI LLRTSQ  QFK+L ECLKELLT+VN+EFI+ KGIRLVSIDPG +AMVHLVIN+VEYFYA GT+TAG+NM+FLY+MIR L+SGD MEWR++ED PH M IEL N +RRT+T+++I LLDLDEV+ISIP VE+DR+VSMPSSEL+KHVREM+A+SN++T+R TK+TL+F+++GDMA+SHITI PTASGLNWK+S+DV   IEGKFVV+YLEKF +  VE+NVE+FLKKN+PLI RYEL+IGTLRFV+APVKD
Sbjct:    5 QEQPTCDGRKLIALLRTSQSTQFKNLCECLKELLTDVNLEFIQDKGIRLVSIDPGRVAMVHLVINSVEYFYAQGTVTAGLNMSFLYRMIRCLTSGDSMEWRVFEDDPHTMHIELYNNDRRTRTVSSIKLLDLDEVDISIPEVEYDRIVSMPSSELSKHVREMIAVSNYVTVRTTKTTLQFIAEGDMATSHITIHPTASGLNWKYSDDVVGTIEGKFVVRYLEKFGRVGVEANVELFLKKNFPLILRYELTIGTLRFVIAPVKD 267          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: D8LPF8_ECTSI (Proliferating cell nuclear antigen n=2 Tax=root TaxID=1 RepID=D8LPF8_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 1.970e-128
Identity = 180/261 (68.97%), Postives = 225/261 (86.21%), Query Frame = 1
Query:   79 KQPFHDDRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
            +QP +  R L+++++TSQCLQFKSL ECLKELL EVN++FIE KGIRLVSIDPG +AM+HLV+N +E FYA GT+TAG+N+  LYKMIRS++S D+MEWRIYED PH+M+IELSN+ERRTKT+ +I LLDLD  +I IP VEFDRVVSMPSSEL+KHVREMV +S FI+IR T++TLE VS+G+MA SHITIEPTASGLNWKHSE  EDIEGK+  +Y+EKF+K+++  NVE+FLK NYPLI R+E+SIG LRF +AP++D
Sbjct:   18 EQPSYKGRPLVLMMQTSQCLQFKSLIECLKELLCEVNMDFIEGKGIRLVSIDPGRVAMIHLVVNNIESFYAKGTVTAGLNVVVLYKMIRSMTSNDFMEWRIYEDEPHRMEIELSNSERRTKTVTSIKLLDLDAEDIIIPQVEFDRVVSMPSSELSKHVREMVTVSPFISIRATQTTLELVSEGEMAKSHITIEPTASGLNWKHSEKGEDIEGKYFARYIEKFTKNSLAINVELFLKANYPLILRFEISIGCLRFCIAPIQD 278          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A836CHQ2_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ2_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.280e-54
Identity = 107/264 (40.53%), Postives = 170/264 (64.39%), Query Frame = 1
Query:   97 DRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYM-EWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNW------KHSEDVED--IEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
            D   I+ +R+SQ  Q++ L + LK+L+TE  + F  + G++L+S+DP  +A++HL   + E++Y    IT G+N+  LYKM+R+L++G YM E+ +       + I+L N+++RT T N + LL L +  + IP   F RV+S+PS++L +HVRE+ A+SN I I+ T   L   ++G M SS I I PTASG++W      + SE   D  +EG +  K+LE+FS+  ++   EIF+K+NYPL+ RY LS  T+R V+APV++
Sbjct:   32 DPDCILCMRSSQTSQWRLLVDFLKDLITECPISF-SQDGMKLISLDPIKVALLHLQAKS-EFYYCKSEITVGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 292          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835Z7L8_9STRA (Proliferating cell nuclear antigen n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.300e-52
Identity = 103/252 (40.87%), Postives = 163/252 (64.68%), Query Frame = 1
Query:  133 CLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYM-EWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNW------KHSEDVED--IEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
            C Q++ L + LK+L+TE  + F  + G++L+S+DP  +A++HL   + E++Y    IT G+N+  LYKM+R+L++G YM E+ +       + I+L N+++RT T N + LL L +  + IP   F RV+S+PS++L +HVRE+ A+SN I I+ T   L   ++G M SS I I PTASG++W      + SE   D  +EG +  K+LE+FS+  ++   EIF+K+NYPL+ RY LS  T+R V+APV++
Sbjct:   46 CSQWRLLVDFLKDLITECPISF-NQDGMKLISLDPIKVALLHLQAKS-EFYYCKSEITIGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRP-LDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQE 294          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835YX88_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX88_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.140e-52
Identity = 102/256 (39.84%), Postives = 171/256 (66.80%), Query Frame = 1
Query:  106 LIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDY-MEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKH--SEDVEDI-EGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
            ++V +RT    Q+++L + LK+L++E  V F    G++LVS+DP ++A+V+L I + E++Y    IT G+N+A LYKM+R+L++G Y +E  + ED P  +++ +SN ++RT+T N   LL L +  I+IP   F RV+S+PS++  +++RE+  +SN I IR T+  L   ++G   S+ I I PTASG++W+   SE  +++ EG F  +Y+E+F++  ++S VEIF+K+ YPL+ RY+L   T+R V+A   D
Sbjct:   66 ILVCMRTHHTQQWRTLTDALKDLISESPVTF-GPAGMKLVSMDPAHVALVNLQIQS-EHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDEVVEGVFYSRYVERFARP-LDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTD 318          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835Z117_9STRA (Proliferating cell nuclear antigen n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z117_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.130e-51
Identity = 97/254 (38.19%), Postives = 165/254 (64.96%), Query Frame = 1
Query:  109 IVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGTITAGINMAFLYKMIRSLSSGDYM-EWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKH------SEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVA 849
            +V +RT    Q+++L + LK+L+ E  V F    G++L+S+DP ++A+++L + + E++Y     T G+N+A LY+M+R+L++G Y+ E  + E  P  + I ++N E+RT+T N + LL L E  I+IP   F RV+S+PS++  +++RE+  +SN I+IR TK  L   + G M ++ I + PTASG++W+H       E+ E +EG ++ KYLE+FS+  ++  VEIF++  YPL+ RY +S   +R V+A
Sbjct:   49 VVCMRTHHTQQWRTLIDALKDLIPESPVTF-GASGMKLISMDPAHVALINLQVCS-EFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRP-LDPVVEIFMRPAYPLVLRYSMSTAVVRLVIA 299          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A835Z2Q5_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.950e-48
Identity = 93/259 (35.91%), Postives = 170/259 (65.64%), Query Frame = 1
Query:  109 IVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAV-EYFYALGTITAGINMAFLYKMIRSLSSGDY-MEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNW------KHSEDVEDIEGKFVVKYLEKFSKSNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD 861
            I+++R++Q  Q++S+F+ +K++ TEV  +F + +G+ ++++DP  IA++   + AV E++Y    +  GIN+  LY+++R+L+S  Y +E  ++++    + ++++N ++R+   N I LL L +  I+IP   FDRV+S+PSS+L +++RE+ ++S+ IT+  T+  L   + G + SS IT+ PT+SG+++      KH E V     +F  +YLEK  +  ++S+ E+FLKK YPL+ RY L+  T+R V+APV D
Sbjct:   26 ILMMRSTQTSQWRSIFDFVKDVTTEVPFKF-DTEGLSIITLDPLKIALIS--VRAVTEFYYCKAPLNVGINVTVLYRLLRNLTSAGYVLEISMFQNETDVIHVQITNRDKRSVVRNKIKLLRLPDEVITIPSTTFDRVLSIPSSDLQRYIRELSSLSSKITVSSTRDELTLSAQGALGSSEITVRPTSSGVHFLFKDTEKHDEVVS---ARFYSRYLEKLCRP-IDSSTEVFLKKGYPLVLRYNLATATIRVVIAPVND 277          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A6C0K8R3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K8R3_9ZZZZ)

HSP 1 Score: 160 bits (404), Expect = 3.660e-44
Identity = 91/255 (35.69%), Postives = 155/255 (60.78%), Query Frame = 1
Query:  103 KLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINA--VEYFYA-LGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITIEPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKS-NVESNVEIFLKKNYPLIFRYEL-SIGTLRFVVAP 852
            +++V   T Q    K LFE +KE+L +VN+ F +K G+++ ++D    A VH+ +     E+F   L  + AG+NM  L+K+I+++ S D +++ IY++ P+++ I   N+ + T T + + LLD++E   SIP VEFD  ++MPS +  K+ R++   S  I IR   + LE ++DGD AS H+ I  ++   N   ++  E +EG + VKYL  F+KS N+ + VE++L   YPLI  Y + ++G L++ +AP
Sbjct:    8 EILVSFHTVQGTTIKGLFESMKEILNDVNMRF-DKTGMKITAMDGNKCACVHIKLEGSKFEHFECNLENVVAGVNMLSLFKLIKTIGSHDTVKFNIYKNKPYELVIMFENSSKNTTTKSVLKLLDINEDIYSIPDVEFDSQINMPSLDFQKYCRDLSIFSEVIKIRSGPAGLELIADGDFASQHVCISQSSDDANMHINKGTEAVEGIYSVKYLNLFTKSTNLSNIVELYLMNEYPLILVYYVGNLGKLQYCLAP 261          
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Match: A0A6C0LE56_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LE56_9ZZZZ)

HSP 1 Score: 158 bits (399), Expect = 1.680e-43
Identity = 90/260 (34.62%), Postives = 156/260 (60.00%), Query Frame = 1
Query:   97 DRKLIVLLRTSQCLQFKSLFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVI--NAVEYFYALGTITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTINTINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTKSTLEFVSDGDMASSHITI-EPTASGLNWKHSEDVEDIEGKFVVKYLEKFSKS-NVESNVEIFLKKNYPLIFRYELS-IGTLRFVVAPVKD 861
            D   IV ++T Q    + LFE LK++LT+VN++    +G++++S+D    A+V+L +  N  E FY   ++ AG+NM  LYK+I+S+ + D + + I   S  K+QIE+ N E++T  +  + LLD+DE  + IP++EFD V +MPS++   ++RE+  I+N +T+    +T     +GD A + I + +     +  +H        G F +KYL  F+KS N+ + VEI+LK  +PLI  Y ++ +G L++ +AP+ +
Sbjct:    3 DSDRIVEIKTVQSNAIRILFEALKDILTDVNLQISSSEGLKIISMDGSKQAVVNLKLEANKFEKFYCKNSMRAGLNMTSLYKIIKSVKNSDIITFYILAGSSTKLQIEIENKEKKTNILTVLKLLDIDEDILDIPNIEFDTVKTMPSNDFQSYIRELSIITNKVTLESKNNTFSLSGEGDFAETKINVGDSNTIDIKTEHHAM-----GTFYIKYLLLFTKSTNLCTTVEIYLKNKFPLILVYNVANLGKLQYCLAPLVE 257          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWG9_9PHYC7.120e-15174.39Putative PCNA n=1 Tax=Feldmannia species virus Tax... [more]
Q6XM81_9PHYC2.530e-13572.62FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPF8_ECTSI1.970e-12868.97Proliferating cell nuclear antigen n=2 Tax=root Ta... [more]
A0A836CHQ2_9STRA3.280e-5440.53Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z7L8_9STRA4.300e-5240.87Proliferating cell nuclear antigen n=2 Tax=Tribone... [more]
A0A835YX88_9STRA5.140e-5239.84Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z117_9STRA1.130e-5138.19Proliferating cell nuclear antigen n=3 Tax=Tribone... [more]
A0A835Z2Q5_9STRA1.950e-4835.91Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A6C0K8R3_9ZZZZ3.660e-4435.69Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0LE56_9ZZZZ1.680e-4334.62Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:831494..832357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score379.4
Seed ortholog evalue1.5e-102
Seed eggNOG ortholog654926.Q8QNE7_ESV1K
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Proliferating cell nuclear antigen, C-terminal domain
EggNOG OGs4QCG1@10239,4QXUJ@35237
COG Functional cat.L
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Exons1
Model size864
Cds size864
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.2976274-CDS-D-herbacea_F_contig11:831493..8323571622927506.2976274-CDS-D-herbacea_F_contig11:831493..832357Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 831494..832357 +
1690790206.1483536-CDS-D-herbacea_F_contig11:831493..8323571690790206.1483536-CDS-D-herbacea_F_contig11:831493..832357Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 831494..832357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.843.1prot_D-herbacea_F_contig11.843.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 831494..832357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.843.1

>prot_D-herbacea_F_contig11.843.1 ID=prot_D-herbacea_F_contig11.843.1|Name=mRNA_D-herbacea_F_contig11.843.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=288bp
MKYSGKELISVGHGEEMEDSVAETSKKQPFHDDRKLIVLLRTSQCLQFKS
LFECLKELLTEVNVEFIEKKGIRLVSIDPGNIAMVHLVINAVEYFYALGT
ITAGINMAFLYKMIRSLSSGDYMEWRIYEDSPHKMQIELSNTERRTKTIN
TINLLDLDEVNISIPHVEFDRVVSMPSSELAKHVREMVAISNFITIRGTK
STLEFVSDGDMASSHITIEPTASGLNWKHSEDVEDIEGKFVVKYLEKFSK
SNVESNVEIFLKKNYPLIFRYELSIGTLRFVVAPVKD*
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mRNA from alignment at D-herbacea_F_contig11:831494..832357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.843.1 ID=mRNA_D-herbacea_F_contig11.843.1|Name=mRNA_D-herbacea_F_contig11.843.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=864bp|location=Sequence derived from alignment at D-herbacea_F_contig11:831494..832357+ (Desmarestia herbacea DmunF female)
ATGAAATATTCCGGCAAGGAACTCATAAGTGTCGGACACGGAGAAGAAAT GGAAGACTCTGTGGCGGAAACGTCTAAGAAACAACCCTTTCACGATGACA GGAAACTTATCGTCCTCCTGCGCACATCTCAGTGTCTACAGTTCAAGTCT CTTTTCGAGTGCCTCAAGGAATTATTAACGGAAGTGAACGTGGAATTTAT CGAGAAGAAAGGAATCCGACTCGTCTCCATCGACCCGGGGAATATTGCCA TGGTCCACCTAGTCATAAACGCAGTGGAGTATTTTTACGCCTTGGGAACC ATCACTGCGGGAATAAACATGGCATTTCTTTACAAGATGATTAGGAGCCT TTCCTCAGGAGATTACATGGAATGGAGGATTTATGAGGACTCCCCACACA AGATGCAGATCGAACTGTCCAACACGGAGAGACGAACCAAGACTATTAAC ACCATCAACCTTCTTGACTTGGACGAAGTCAATATAAGTATTCCGCACGT CGAATTCGACAGGGTCGTCAGTATGCCGAGCTCGGAGTTGGCGAAACATG TCCGCGAGATGGTTGCCATCTCGAACTTTATCACTATCAGGGGCACGAAG TCTACTCTCGAGTTTGTCTCTGATGGAGACATGGCATCGAGTCATATCAC CATTGAACCAACTGCGTCGGGTCTCAACTGGAAACACAGCGAGGATGTGG AAGACATCGAGGGTAAATTCGTCGTGAAATACCTAGAGAAGTTCAGTAAG AGCAACGTCGAGAGCAATGTCGAAATATTCCTCAAGAAGAATTACCCACT CATATTCAGGTACGAGCTGTCCATCGGAACACTGAGGTTCGTCGTCGCCC CTGTGAAAGACTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:831494..832357+

>mRNA_D-herbacea_F_contig11.843.1 ID=mRNA_D-herbacea_F_contig11.843.1|Name=mRNA_D-herbacea_F_contig11.843.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1728bp|location=Sequence derived from alignment at D-herbacea_F_contig11:831494..832357+ (Desmarestia herbacea DmunF female)
ATGAAATATTCCGGCAAGGAACTCATAAGTGTCGGACACGGAGAAGAAAT
GGAAGACTCTGTGGCGGAAACGTCTAAGAAACAACCCTTTCACGATGACA
GGAAACTTATCGTCCTCCTGCGCACATCTCAGTGTCTACAGTTCAAGTCT
CTTTTCGAGTGCCTCAAGGAATTATTAACGGAAGTGAACGTGGAATTTAT
CGAGAAGAAAGGAATCCGACTCGTCTCCATCGACCCGGGGAATATTGCCA
TGGTCCACCTAGTCATAAACGCAGTGGAGTATTTTTACGCCTTGGGAACC
ATCACTGCGGGAATAAACATGGCATTTCTTTACAAGATGATTAGGAGCCT
TTCCTCAGGAGATTACATGGAATGGAGGATTTATGAGGACTCCCCACACA
AGATGCAGATCGAACTGTCCAACACGGAGAGACGAACCAAGACTATTAAC
ACCATCAACCTTCTTGACTTGGACGAAGTCAATATAAGTATTCCGCACGT
CGAATTCGACAGGGTCGTCAGTATGCCGAGCTCGGAGTTGGCGAAACATG
TCCGCGAGATGGTTGCCATCTCGAACTTTATCACTATCAGGGGCACGAAG
TCTACTCTCGAGTTTGTCTCTGATGGAGACATGGCATCGAGTCATATCAC
CATTGAACCAACTGCGTCGGGTCTCAACTGGAAACACAGCGAGGATGTGG
AAGACATCGAGGGTAAATTCGTCGTGAAATACCTAGAGAAGTTCAGTAAG
AGCAACGTCGAGAGCAATGTCGAAATATTCCTCAAGAAGAATTACCCACT
CATATTCAGGTACGAGCTGTCCATCGGAACACTGAGGTTCGTCGTCGCCC
CTGTGAAAGACTAAATGAAATATTCCGGCAAGGAACTCATAAGTGTCGGA
CACGGAGAAGAAATGGAAGACTCTGTGGCGGAAACGTCTAAGAAACAACC
CTTTCACGATGACAGGAAACTTATCGTCCTCCTGCGCACATCTCAGTGTC
TACAGTTCAAGTCTCTTTTCGAGTGCCTCAAGGAATTATTAACGGAAGTG
AACGTGGAATTTATCGAGAAGAAAGGAATCCGACTCGTCTCCATCGACCC
GGGGAATATTGCCATGGTCCACCTAGTCATAAACGCAGTGGAGTATTTTT
ACGCCTTGGGAACCATCACTGCGGGAATAAACATGGCATTTCTTTACAAG
ATGATTAGGAGCCTTTCCTCAGGAGATTACATGGAATGGAGGATTTATGA
GGACTCCCCACACAAGATGCAGATCGAACTGTCCAACACGGAGAGACGAA
CCAAGACTATTAACACCATCAACCTTCTTGACTTGGACGAAGTCAATATA
AGTATTCCGCACGTCGAATTCGACAGGGTCGTCAGTATGCCGAGCTCGGA
GTTGGCGAAACATGTCCGCGAGATGGTTGCCATCTCGAACTTTATCACTA
TCAGGGGCACGAAGTCTACTCTCGAGTTTGTCTCTGATGGAGACATGGCA
TCGAGTCATATCACCATTGAACCAACTGCGTCGGGTCTCAACTGGAAACA
CAGCGAGGATGTGGAAGACATCGAGGGTAAATTCGTCGTGAAATACCTAG
AGAAGTTCAGTAAGAGCAACGTCGAGAGCAATGTCGAAATATTCCTCAAG
AAGAATTACCCACTCATATTCAGGTACGAGCTGTCCATCGGAACACTGAG
GTTCGTCGTCGCCCCTGTGAAAGACTAA
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