mRNA_D-herbacea_F_contig109.783.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig109.783.1
Unique NamemRNA_D-herbacea_F_contig109.783.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig109.783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig109contigD-herbacea_F_contig109:751153..753241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927496.0653665-CDS-D-herbacea_F_contig109:751152..7512421622927496.0653665-CDS-D-herbacea_F_contig109:751152..751242Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 751153..751242 +
1690790200.0804014-CDS-D-herbacea_F_contig109:751152..7512421690790200.0804014-CDS-D-herbacea_F_contig109:751152..751242Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 751153..751242 +
1622927496.075872-CDS-D-herbacea_F_contig109:753019..7532411622927496.075872-CDS-D-herbacea_F_contig109:753019..753241Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 753020..753241 +
1690790200.0899484-CDS-D-herbacea_F_contig109:753019..7532411690790200.0899484-CDS-D-herbacea_F_contig109:753019..753241Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 753020..753241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig109.783.1prot_D-herbacea_F_contig109.783.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig109 751153..753241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig109.783.1

>prot_D-herbacea_F_contig109.783.1 ID=prot_D-herbacea_F_contig109.783.1|Name=mRNA_D-herbacea_F_contig109.783.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=104bp
GTSPAGRVEDALAVVAKERGRSFIPPRILQPGFPQRVCDGEPASCAAMMA
FLKRLKNDKNNSNLRIISAPPSVPTTQPKKAQRTLHQSPPSIAPTMTPRL
LQTG
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mRNA from alignment at D-herbacea_F_contig109:751153..753241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig109.783.1 ID=mRNA_D-herbacea_F_contig109.783.1|Name=mRNA_D-herbacea_F_contig109.783.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2089bp|location=Sequence derived from alignment at D-herbacea_F_contig109:751153..753241+ (Desmarestia herbacea DmunF female)
GGCACTAGTCCCGCCGGCCGCGTCGAAGATGCCCTTGCGGTGGTAGCGAA
GGAACGCGGCAGATCATTTATTCCGCCGCGTATTCTCCAGGTAAAACATA
AAGCAGAGGACGTACGAGGGCTTGTGTTAAGATGTTACACGAACCGTCCC
ACTTTTTTTTTTGTTACAACTACATTGAGGTAGTATTGAACTTGTTAAGA
GAGATCTACAACAACAGGTGCATAGCTGTATCAACTTTATACTCCCTCTG
TCCTATACGCCTGGGTCGTTCGGTATTCACTAGGTATGCGAGTACATGCC
AATATGAAGAGGCTCCTTCTACGTAGAGGCCTCCCAGTGTGGTGGTAGCT
TTAGCCCGCTACCGGAGGCAGGTCCGAGTTCTTTGGTAGATGTAGGCAAG
GAGAGAGCCCTTCGCTACAGGCGAAGATTAGAGAGTGGTCCCTGGGCGCG
CCGTCAGGCTTGTCCAAGGACCCTACGTATTTCGGGCTATCACCCAAGAT
ACGTAGTATCTGGCTGGAATTATCCTCGGGTCCTCTAATGGGCCGATGGA
TCTTCCAGAAGTGCATGACTGACGATCTTTCTACATACCTTCTAAATAGT
CTCCTCCACAGTACCCCCCCCTTTATGCGCTACAAGTCCATCGTTGCTAA
GGATGTATTTTTGTAGCGATCATTCAGGTAGGAATGATACATGTATGGTG
GAACGTATTCTTTTTGAAGGTGTAGTTTATTATGTAATCGTTCGATATTT
TACTTGCGTTAGATGTTCGTCTCCTCATTGTCGTGTTGAAAAAACACAAC
TAGAACTTCATACGCTAGTAATTTGACATGCTTCACAGCTATTATTACTT
CGGAGTGTTTGTAGGTGCCCCTATATTCATTCGACGTAAGGCTGAGTGTG
GCCACACCCAGTAATATACATCCCCGTGATGCTGATAAATCATGGGCGAA
AAGCTTTATAGACTTGACATGGATGTGTTGTAATAACATATTCCTGTTGC
GTCTAATAGGGACTTCTGCTAATTTACCCTCACAATAAATATGAGGTGTG
CTAGATATTAGTACCTTTATGATATCTCGATTACCTTTTGATCATGAGTA
ATTCGGATATCTTGTCGTCAAGTAAGATAACATTATTATTTTCCTTGAAA
ACTCTGTCAGCTTCTGATCGATTTGCGGATTAGGTTCGCGTGGACCGTAC
CGTTTGGGAAATGAACTGATACACACTCTAAAAATGGAATGTGCCTTGAT
CATGTCAGACAACTTACAGCAAAACGGTGATTTTGTGGCTGAATATTTTT
TCCGTGTGTGCTCCCGGTTTTTGCTAGGCCGTATTCATCATCACCGGTCA
AATCAACTACTTAATGACTTCTCTCCTCGTCAACATACGCCCAAACGTAT
GCTAATATTAAATTTTGCAAAAAATAAATAAAATATTATTCGCCAAATTC
TTGTCACCGTGAGTTAACCCTCGTTCATGTTACTGTAACCAAGATTATAC
TTGATTTGCTTTTGTGTCCCTCTATTTGTGCCGCCGAGCTTCCAGTGTAT
TTTCTTTTGTTGAATAGAGCGCTCTACTGGATTATTAGTGATCCTTCCCT
ACATTCCCCACGTTTTCGTATCCAAAAAATACTAGACGGGTTCGTTGCGG
GAAGCGCGAATATTCAGACCATTAGCGGTTCTGTATGCGGCAATGAGTTC
GTGACATTGTGGTACCTCTTCTGCTCGATATTCAAGGTCCGATTCCGGTC
CGTAACCTTGTAGGCGTAAACGGTACTTAAAATTGTGGGTACTTTTCCTG
CCAGGTTTTCGCTAACCGTCCCCAAACCCGCCGCCCTCCCTCCCTCCCGC
CCACCCAATCGGGATAGCCGGGGTTTCCACAGCGAGTATGCGACGGAGAA
CCGGCTTCCTGCGCGGCCATGATGGCGTTTCTGAAACGGCTCAAGAACGA
CAAGAACAACAGCAACCTCCGCATCATTTCCGCGCCCCCTTCCGTGCCAA
CAACACAGCCAAAAAAAGCACAACGCACACTGCATCAATCGCCACCGTCC
ATCGCCCCGACGATGACGCCGCGTCTGCTGCAAACGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig109:751153..753241+

>mRNA_D-herbacea_F_contig109.783.1 ID=mRNA_D-herbacea_F_contig109.783.1|Name=mRNA_D-herbacea_F_contig109.783.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=624bp|location=Sequence derived from alignment at D-herbacea_F_contig109:751153..753241+ (Desmarestia herbacea DmunF female)
GGCACTAGTCCCGCCGGCCGCGTCGAAGATGCCCTTGCGGTGGTAGCGAA
GGAACGCGGCAGATCATTTATTCCGCCGCGTATTCTCCAGGGCACTAGTC
CCGCCGGCCGCGTCGAAGATGCCCTTGCGGTGGTAGCGAAGGAACGCGGC
AGATCATTTATTCCGCCGCGTATTCTCCAGCCGGGGTTTCCACAGCGAGT
ATGCGACGGAGAACCGGCTTCCTGCGCGGCCATGATGGCGTTTCTGAAAC
GGCTCAAGAACGACAAGAACAACAGCAACCTCCGCATCATTTCCGCGCCC
CCTTCCGTGCCAACAACACAGCCAAAAAAAGCACAACGCACACTGCATCA
ATCGCCACCGTCCATCGCCCCGACGATGACGCCGCGTCTGCTGCAAACGG
GGCCGGGGTTTCCACAGCGAGTATGCGACGGAGAACCGGCTTCCTGCGCG
GCCATGATGGCGTTTCTGAAACGGCTCAAGAACGACAAGAACAACAGCAA
CCTCCGCATCATTTCCGCGCCCCCTTCCGTGCCAACAACACAGCCAAAAA
AAGCACAACGCACACTGCATCAATCGCCACCGTCCATCGCCCCGACGATG
ACGCCGCGTCTGCTGCAAACGGGG
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