mRNA_D-herbacea_F_contig109.777.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig109.777.1
Unique NamemRNA_D-herbacea_F_contig109.777.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig109.777.1 vs. uniprot
Match: D7G3H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H8_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.200e-22
Identity = 57/108 (52.78%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:    1 ETGGGDVWDASQAYALSVYETSRVFFSLHQENPPRENKGEPHMGAGVTVLRVRGGLGLEAVASIGNPTGETAATVGAVLTPGRYVVVPIYTGGLVVEAYEKGEARTEN 324
            E  GG +W ASQ YALSVYETSR+FFS++QEN      G      GVTVLRVR G G E VAS GNP   + +T G VL PGRYVV+P YTG +  +   +G +   N
Sbjct:  614 EEEGGMLWGASQVYALSVYETSRIFFSVYQENRSDSASGVCWRDVGVTVLRVRDGCGPEVVASTGNPAQASVST-GTVLFPGRYVVIPSYTGCVTKDQALQGNSELGN 720
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig109.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H8_ECTSI1.200e-2252.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig109contigD-herbacea_F_contig109:650509..653331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue8.5e-20
Seed eggNOG ortholog2880.D7G3H8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size357
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig109.777.1prot_D-herbacea_F_contig109.777.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig109 650509..653331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927495.5372095-CDS-D-herbacea_F_contig109:650508..6506881622927495.5372095-CDS-D-herbacea_F_contig109:650508..650688Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 650509..650688 -
1690790199.7922118-CDS-D-herbacea_F_contig109:650508..6506881690790199.7922118-CDS-D-herbacea_F_contig109:650508..650688Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 650509..650688 -
1622927495.549789-CDS-D-herbacea_F_contig109:652151..6522381622927495.549789-CDS-D-herbacea_F_contig109:652151..652238Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 652152..652238 -
1690790199.8056602-CDS-D-herbacea_F_contig109:652151..6522381690790199.8056602-CDS-D-herbacea_F_contig109:652151..652238Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 652152..652238 -
1622927495.5612414-CDS-D-herbacea_F_contig109:653241..6533311622927495.5612414-CDS-D-herbacea_F_contig109:653241..653331Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 653242..653331 -
1690790199.8131373-CDS-D-herbacea_F_contig109:653241..6533311690790199.8131373-CDS-D-herbacea_F_contig109:653241..653331Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 653242..653331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig109.777.1

>prot_D-herbacea_F_contig109.777.1 ID=prot_D-herbacea_F_contig109.777.1|Name=mRNA_D-herbacea_F_contig109.777.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=119bp
ETGGGDVWDASQAYALSVYETSRVFFSLHQENPPRENKGEPHMGAGVTVL
RVRGGLGLEAVASIGNPTGETAATVGAVLTPGRYVVVPIYTGGLVVEAYE
KGEARTENGHVRSTKTKRD
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mRNA from alignment at D-herbacea_F_contig109:650509..653331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig109.777.1 ID=mRNA_D-herbacea_F_contig109.777.1|Name=mRNA_D-herbacea_F_contig109.777.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2823bp|location=Sequence derived from alignment at D-herbacea_F_contig109:650509..653331- (Desmarestia herbacea DmunF female)
GAGACGGGAGGAGGGGACGTCTGGGATGCCTCACAGGCTTACGCGCTTTC
TGTGTACGAGACGTCCCGTGTTTTCTTCTCCTTACACCAGGTTCCTCTGC
AGCTGATTGAGTAGATGTTTTTTGCTGTTGTTTATGTTTTGGCTATTATT
GTGGATACGAACATGTTTGAAGGCGTTTATTTTGTTGTTGCGATGGCGCG
TGCTAGAAACAAAACCGGATATGATCTGTATGTTGATCTAGTATTGTTTT
TGTTTTTTTGAATATCTGTATGTTGATCTAATATTGTTGTTGTTGCTGTT
ATTGCTGTTGCTGTTGCTGTTGTCGTTGCTGCTGCCTCTGTCGTTGTTGT
CTCGGGTCTGTCATCATCATTAGCCCCGTGCGAAGACTCATCCTTCCAAT
TCCAACAGCTTTCCAATAAAAGAACGCACAGGCAGATACAATGCCCCATG
AGCGACGACAGAGTATGCCCCCGTGTAGTCCTGTATTCTAGTACCGATCA
TTTGACGTTATTATTATTATTATTATTATTATTATTATTATTATTATTAT
TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTTCGGTCACT
TGAGGCAGATTGCTCGGACCCGTGGTCACAAAGATGGGCACCGTTTTCTA
CCAACGTACCAACCCCACCGGTTTGCATCCCCTCTCCGAAAATTGAATAT
ACTCCCCACTGATATCAGATCGCGGGCGTGGGCGAATCAGTTGGGCGCAC
AGTAGCAACAACGCAAGAATAAACGACTAAAACAGCAGGCTGATACCACC
CTTGTTTCCGTTCTGCGACTGCTCGGTAAAGCCGTTCCCGATATACTGGT
GTGGTAACGATGACAAGACTATTGTCAATGACGATGGTACGCATTTCATG
GAGTACCCCTCCCTAGTTGGAGTAGGAACGGTGCTCCGTCTCGAAAGGAA
TGCGTGGTCAATGGTCAAAGGACTAAGGCAAGCAACAAATGAGTACCCCC
CCCCCCCCTCCCTCGTCGCCGATATCATTTTTTATTCGTGCAGGAAAACC
CGCCGCGAGAAAATAAGGGAGAACCTCACATGGGGGCCGGAGTTACTGTA
CTGCGCGTGAGGGGCGGGTTGGGACTAGAGGTTAGTTTTGTGATAAGAGC
CGTTTTTTGCGGAAGGGCTATCAAAAACATCGCAGATGCCTGCTGCCTTA
CCTTACATACCGCATTCGTAGGCTTCCAATTTCATGGCGAGGTATGCAGG
ATACACGGGTCATCGTTTGTGCTGGGACCACGACAGAACAAAGGCAGCAC
CACACCGTCTCCCCGCCCCCCGCTCCCCTCAGGGATCAACGGCCACTTTC
CACACGCTTACGAGATACGGCGGTGCTAGAGCCTTCCCCCTCCTCCGTCC
TGCCCCCATCTGCGGTCGCCAGTGTAACGACAGTTATGTCCATCCTATTA
TTCCTTGTCAGACGAAGGAATTTTGTTCGGCGTTATGTTTGAGAAAAGCA
ACTCCCAGCAAGAACTGTTAGCGCTTGTTTTTTACGTCCAAGATACGGCA
GGGTGGCTTGGATAGATAGATCGTGTCTCTTGTGGGTTTAGAGAACAGCG
CTGGCGAGAGGGGAGTTGGACTCGGCAGAGGGATCGCCGTGCCGGGATTC
CCGCGTCGGACCGACGGGACTTCGAAATAACCCTCAAAATTTTCGTTTTT
TCAGCCGATCCAATATTTTTGTAGACCAAACCCTCACCGTTGGTTGTTCG
GTCTCGGTCTTCTAATGGTGTTGGACCTACTAGTAAACAAGGTTAATCCG
TGATTTTGAGTACGAGATATGAGGATTCCTGGTGCGTGGGTACCCCCCCT
CCTCCCCCTTGTGCACGCGGTGTCTGCCTGGTCGGTGAAAACCCGACGCA
CTCCGTCCCGGCATAGTTAGGATACGAGGGTCTATGGTCATACGACTACG
GCCATGCATGAAATGATTACACCCCTCCCTTCCCCCCCCGGGGTTGGCGT
CGGTTGGCAACGACGCTGCAAAACACGCCACTCGCGGCGTGGGCTAAACA
ACCACGGTACCGTTTTGTTTTTAGTTTATTGTTTTCGGCGGTTACCATGG
CTGGTTGTCGAGCTAGATCATATTGTGCGGGGTGGAGAACCTTAACTCCG
CAAAAGTGGGATGATATCACGCACTTTGCACAAGGTAAGGCACCCACGAG
GCAATTACATAGTATACCCATGCTGTCTCTGGAAGTGGCCACACCAGAAA
ACAAACTGTTCATTCTAAGCTGTCATCCATATGCAAGAAAGTACGCACAA
GGTGCCGAAGTGCTGGTTCTTCGTAGGATGCAGCTCACCCTTCAAGCGAA
TCGCCGAACACCTCACGGTGCTGGGCGCTTGGTGCAGGCGATGCCTGCTT
GATCGGTAAAACCCCGGCGTGCTCCGTGCCGGCATTGTAGGGATGCGAGG
CTCTACGGTCTTACAACAATACGGCCATGCATGAATTGAGTACACCCCCC
CCTATGGTCATACGACTACGGACATGCATGAAATGAATACCCCCCCCCCC
CTCGTCCTCCCGGTACTTCATGTCCTTTCCCCACAAAAAACAGGCGGTAG
CAAGTATAGGAAACCCAACCGGAGAAACAGCAGCTACCGTGGGAGCGGTT
CTTACGCCAGGGAGGTATGTGGTCGTTCCCATCTACACCGGGGGTCTTGT
TGTGGAGGCGTACGAAAAGGGGGAAGCGAGGACAGAAAATGGGCACGTCC
GGAGCACGAAGACGAAGAGGGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig109:650509..653331-

>mRNA_D-herbacea_F_contig109.777.1 ID=mRNA_D-herbacea_F_contig109.777.1|Name=mRNA_D-herbacea_F_contig109.777.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=714bp|location=Sequence derived from alignment at D-herbacea_F_contig109:650509..653331- (Desmarestia herbacea DmunF female)
GAGACGGGAGGAGGGGACGTCTGGGATGCCTCACAGGCTTACGCGCTTTC
TGTGTACGAGACGTCCCGTGTTTTCTTCTCCTTACACCAGGAGACGGGAG
GAGGGGACGTCTGGGATGCCTCACAGGCTTACGCGCTTTCTGTGTACGAG
ACGTCCCGTGTTTTCTTCTCCTTACACCAGGAAAACCCGCCGCGAGAAAA
TAAGGGAGAACCTCACATGGGGGCCGGAGTTACTGTACTGCGCGTGAGGG
GCGGGTTGGGACTAGAGGAAAACCCGCCGCGAGAAAATAAGGGAGAACCT
CACATGGGGGCCGGAGTTACTGTACTGCGCGTGAGGGGCGGGTTGGGACT
AGAGGCGGTAGCAAGTATAGGAAACCCAACCGGAGAAACAGCAGCTACCG
TGGGAGCGGTTCTTACGCCAGGGAGGTATGTGGTCGTTCCCATCTACACC
GGGGGTCTTGTTGTGGAGGCGTACGAAAAGGGGGAAGCGAGGACAGAAAA
TGGGCACGTCCGGAGCACGAAGACGAAGAGGGACGCGGTAGCAAGTATAG
GAAACCCAACCGGAGAAACAGCAGCTACCGTGGGAGCGGTTCTTACGCCA
GGGAGGTATGTGGTCGTTCCCATCTACACCGGGGGTCTTGTTGTGGAGGC
GTACGAAAAGGGGGAAGCGAGGACAGAAAATGGGCACGTCCGGAGCACGA
AGACGAAGAGGGAC
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