mRNA_D-herbacea_F_contig1078.701.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: A0A6H5J5U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U8_9PHAE) HSP 1 Score: 283 bits (724), Expect = 4.780e-86 Identity = 153/247 (61.94%), Postives = 188/247 (76.11%), Query Frame = 3
Query: 57 VSSQGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRS-VSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
++ GVY MLC+ Q GKTEEE+ D AR+A+QKS SG RE + RQ S V+ + LS S K + EEEKLP P R RMW+LNK DWPWL+LGV+GAI+AGGT P+EGVFIAHVQ +Y EMR +GN WA+GFV LGLTA++G+ L TGFAVAGERMTR LR MAF+AMVRHDI+WFDK+ AVGILT+RLE+EAS+VR++TG+N+AH+TQL+MTL +GTVIGLVF+WQI
Sbjct: 513 LALNGVYHMLCTSQGGKTEEEMEADKQARLARQKSLSGAKVAREASGSDALLRRQSSNVNAGHEIDLSASAGKKDAKVEEEKLPKPPRGRMWSLNKGDWPWLVLGVIGAIIAGGTAPSEGVFIAHVQVWVY-----EMRTIGNRWALGFVGLGLTALVGNFVLSTGFAVAGERMTRTLRKMAFEAMVRHDISWFDKESSAVGILTSRLESEASMVRRSTGSNVAHSTQLMMTLTIGTVIGLVFAWQI 754
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI) HSP 1 Score: 257 bits (656), Expect = 8.340e-75 Identity = 139/250 (55.60%), Postives = 176/250 (70.40%), Query Frame = 3
Query: 57 VSSQGVYVMLCSGQRGKTEEEIAQ-DTAARIAKQ------KSGSGGVANRETVNRMHRQRSVSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
++ GVY LCS Q G T E +A D A + +SG+G V + + + G S + K +E++EEKLPAP RMWALNK DWPWLL+G +GA+VAGG P+EGVF+A QSNLY DT +MR++GN WA+GFV LG ++G++AL TGF V+GER+TR LR MAF+AMVRHDIAWFD++ AVG+LTTRLEAEAS+VRKATG N+AHATQL+MTL VGT+IGL F+WQI
Sbjct: 616 LALNGVYHTLCSSQTGGTTEGLAGGDNAMELRTSNENIASESGAGDVKSGSPKDATPGGAPMD-----GSSGADKQKSKEEQEEKLPAPASGRMWALNKGDWPWLLMGFVGAVVAGGCAPSEGVFLAQGQSNLYLEDTEQMRKIGNRWALGFVGLGFLNLVGNMALSTGFTVSGERLTRTLRYMAFEAMVRHDIAWFDEESSAVGVLTTRLEAEASMVRKATGGNVAHATQLMMTLTVGTLIGLAFAWQI 860
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: D8LS12_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS12_ECTSI) HSP 1 Score: 197 bits (501), Expect = 6.820e-54 Identity = 113/256 (44.14%), Postives = 160/256 (62.50%), Query Frame = 3
Query: 57 VSSQGVYVMLC----------SGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRSVSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
++ G+Y LC S + A+ AR A+QKS S A + MH+ + + G ++ K E +E K P P SRMWALNK + +L+LG++GA++AG FP EGV IA++Q+NLY TD ++R VG W++GFV L A++GH A+ GF+VAGER+TR LR + F+A++RHDI WFDK+E AVG LTT+LE + + V+ ATG N+A+ TQLV+TL++G VIGL +WQI
Sbjct: 625 LAKNGIYTALCTIEGPGAGNGSAAXXXAGDNGAEGVVARTARQKSASVESAKMRRQSSSAVMHKGQQPGGEGGDGAAEDKA--KGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGALMAGSLFPIEGVLIANMQNNLYATDPDKVRSVGEKWSLGFVGLAAVAIVGHCAMAYGFSVAGERLTRRLREIGFRAILRHDIGWFDKEENAVGALTTQLEEDTAKVQFATGTNVANKTQLVVTLLLGVVIGLASAWQI 878
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.090e-52 Identity = 117/247 (47.37%), Postives = 145/247 (58.70%), Query Frame = 3
Query: 57 VSSQGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNR---MHRQRS-VSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
++ GVY MLC+ Q GKTEEEI D AR+A+QKS SG RE + RQ S V+ ++ LS S K + EEEKLP P R RMW+LNK DWPWL+LGV+GAI+AGGT P+EGVFIAHVQ VRHDI+WFDK+ AVGILT+RLE+EAS+VR++TG+N+AH+TQL+MTL +GTVIGLVF+WQI
Sbjct: 585 LALNGVYHMLCTSQGGKTEEEIEADIQARLARQKSLSGAKVTREASGSDALLRRQSSNVNPGQEIDLSASAGKKDAKVEEEKLPKPPRGRMWSLNKGDWPWLVLGVIGAIIAGGTTPSEGVFIAHVQ-----------------------------------------------------------VRHDISWFDKESSAVGILTSRLESEASMVRRSTGSNVAHSTQLIMTLTIGTVIGLVFAWQI 772
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA) HSP 1 Score: 186 bits (472), Expect = 5.240e-50 Identity = 85/164 (51.83%), Postives = 115/164 (70.12%), Query Frame = 3
Query: 294 PAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
P SR+WALN+ DW W+++G++GA + G FP EG+ IA++Q+ Y T+ +MRR G+ W +GFVFL + A +GHL L GF+ +GERM R LR AF A+VRHDI WFD +E A G+LT RLE +A+ + +ATG L H QL+MTL VG V+GL +WQI
Sbjct: 626 PRAPMSRLWALNRPDWMWVVVGLVGAFITGSLFPTEGIIIANIQNTFYLTNADDMRRTGHLWTLGFVFLAIAATVGHLMLAAGFSTSGERMVRRLRETAFAAIVRHDIGWFDFEEHATGVLTGRLEEDANAMARATGMALGHKVQLIMTLCVGIVVGLAAAWQI 789
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.200e-46 Identity = 97/249 (38.96%), Postives = 145/249 (58.23%), Query Frame = 3
Query: 57 VSSQGVYVMLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNRMHRQRSV----SKDEDTGLSDSV--TAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
++ G+Y LC+ Q G D A R +++S + R + + DE G + T KK++ ++ P SR+WA+ + DWPW+ +G+ GA + G FP EG+ +A +Q Y + E+ G W +GFV L + ++G+L L TGFA +GERMTR LR MAFKA++RHD+ WFD +E + +LTT LE++AS + KATG +L H QLVMTL++G +IGLV +WQ+
Sbjct: 693 MALDGIYAQLCAAQSGGA------DAAQRALRRQSSAEATRQRSLRDNSSSAMAAIGGGQADEGAGEGGAKGKTGKKDDNADK--PKAPLSRLWAMQRPDWPWVAMGIGGATLCGAMFPVEGIILAKLQEAFYLRTSEEILDQGTSWVLGFVGLAGSTLLGNLMLTTGFATSGERMTRRLRGMAFKAIIRHDVGWFDAEEHSTAVLTTNLESDASAMAKATGLDLGHKVQLVMTLLLGVLIGLVAAWQV 933
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.480e-37 Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = 3
Query: 294 PAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
P R+WAL + D W+L+G+ G+I+ G +P +GV +A +QS+ Y S+++ G W + FV L + ++GH+ GFAV+GER+TR +R MAFKA++RHDI WFD E AVG+LTT LEA+AS + +ATG ++ H QL+ T+ +G L SWQ+
Sbjct: 926 PLAPLGRIWALQRQDVGWVLMGICGSILLGAKWPVQGVILAQLQSSFYLPTASQIQDKGYDWVLAFVGLAASTVVGHVIEALGFAVSGERLTRRMREMAFKAILRHDIGWFDNAEHAVGVLTTSLEADASAMARATGMDVGHKVQLLATIGLGVGXXLGASWQV 1089
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: UPI0010A9879B (multidrug resistance protein 1 n=1 Tax=Antrostomus carolinensis TaxID=279965 RepID=UPI0010A9879B) HSP 1 Score: 126 bits (317), Expect = 2.660e-29 Identity = 75/209 (35.89%), Postives = 121/209 (57.89%), Query Frame = 3
Query: 159 SGSGGVANRETVNRMHRQRSVSKDEDTGLSDSVTAKKEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
SG G + R + ++ +S SK + +G KK+E EEE LPA SR+ ALNK +WP++LLGV+ A ++GG PA V + +TD + + ++ F+ LG+ + ++ G F +GE +T+ LR+++F+A+++ +I W+D + AVGIL TRL +AS V+ ATG+ L + V TLV +I V+ WQ+
Sbjct: 697 SGRGSIRRRSS---RYKSKSCSKKKFSGKK-----KKKELEEENLPAVPYSRILALNKPEWPYVLLGVIAAAISGGVHPAFAVIFGKIIGAFQETDPEKRNKNTLVLSLMFLLLGVITLTAYIIQGFMFGKSGEILTKRLRSLSFRALLQQEIGWYDDQKNAVGILLTRLATDASQVKGATGSRLGLMSMTVFTLVTAIIIAFVYGWQL 897
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: A0A401NNP4_SCYTO (Uncharacterized protein n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401NNP4_SCYTO) HSP 1 Score: 126 bits (316), Expect = 3.430e-29 Identity = 67/168 (39.88%), Postives = 101/168 (60.12%), Query Frame = 3
Query: 279 EEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQ 782
EE KL + + +++ LNK++WP++ LGV+GAIV G T PA + A + S +TDT +R+ N +++ F +G+ + + + G F AGE +T+ LR MAFKAM+R +IAWFD + G LTTRL EAS V+ G+ L Q V ++ +I +F WQ
Sbjct: 438 EEGKLKSVSFLKLFKLNKSEWPYIFLGVIGAIVNGATHPAFCIIFAKIVSIFTQTDTDVIRQQANLYSILFCVIGIVSFVTYFLQGFMFGKAGETLTQKLRYMAFKAMLRQEIAWFDDKNNSTGALTTRLATEASQVQTTVGSRLGLIAQNVASMGTAVIISFIFGWQ 605
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Match: W5LL95_ASTMX (ATP-binding cassette, sub-family B (MDR/TAP), member 5 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5LL95_ASTMX) HSP 1 Score: 125 bits (313), Expect = 8.980e-29 Identity = 66/173 (38.15%), Postives = 102/173 (58.96%), Query Frame = 3
Query: 267 KEEQEEEKLPAPTRSRMWALNKADWPWLLLGVMGAIVAGGTFPAEGVFIAHVQSNLYKTDTSEMRRVGNWWAVGFVFLGLTAMMGHLALGTGFAVAGERMTRALRTMAFKAMVRHDIAWFDKDELAVGILTTRLEAEASLVRKATGANLAHATQLVMTLVVGTVIGLVFSWQI 785
K E+EEE +P SR+ ALNK++WP+LL+G + + V GG +PA + A + + D R+ +++ F+ +G A + G F +GE +T LR+ AFKA++R DI+WFD AVG+LTT+L +ASLV+ A G+ L AT + LV+ ++ SWQ+
Sbjct: 676 KAEKEEESVPDVPFSRILALNKSEWPYLLVGTLASFVGGGVYPAVAILFAKIIGVFSEPDPEVKRQKALMFSLLFLLVGAVAFLTFFFQGYMFGKSGEILTMRLRSQAFKAILRQDISWFDDHNNAVGVLTTKLATDASLVKGAAGSRLGLATNTICALVIAMIVAFFHSWQL 848 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1078.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1078.701.1 >prot_D-herbacea_F_contig1078.701.1 ID=prot_D-herbacea_F_contig1078.701.1|Name=mRNA_D-herbacea_F_contig1078.701.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=235bp MLCSGQRGKTEEEIAQDTAARIAKQKSGSGGVANRETVNRMHRQRSVSKDback to top mRNA from alignment at D-herbacea_F_contig1078:29360..40564+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1078.701.1 ID=mRNA_D-herbacea_F_contig1078.701.1|Name=mRNA_D-herbacea_F_contig1078.701.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=11205bp|location=Sequence derived from alignment at D-herbacea_F_contig1078:29360..40564+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1078:29360..40564+ >mRNA_D-herbacea_F_contig1078.701.1 ID=mRNA_D-herbacea_F_contig1078.701.1|Name=mRNA_D-herbacea_F_contig1078.701.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1410bp|location=Sequence derived from alignment at D-herbacea_F_contig1078:29360..40564+ (Desmarestia herbacea DmunF female)back to top |