mRNA_D-herbacea_F_contig107.671.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig107.671.1
Unique NamemRNA_D-herbacea_F_contig107.671.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:281082..282173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1092
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.671.1prot_D-herbacea_F_contig107.671.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig107 281104..281985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927476.585143-UTR-D-herbacea_F_contig107:281081..2811031622927476.585143-UTR-D-herbacea_F_contig107:281081..281103Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 281082..281103 +
1690790191.825255-UTR-D-herbacea_F_contig107:281081..2811031690790191.825255-UTR-D-herbacea_F_contig107:281081..281103Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 281082..281103 +
1622927476.6243038-UTR-D-herbacea_F_contig107:281985..2821731622927476.6243038-UTR-D-herbacea_F_contig107:281985..282173Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 281986..282173 +
1690790191.8474567-UTR-D-herbacea_F_contig107:281985..2821731690790191.8474567-UTR-D-herbacea_F_contig107:281985..282173Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 281986..282173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927476.6099203-CDS-D-herbacea_F_contig107:281103..2819851622927476.6099203-CDS-D-herbacea_F_contig107:281103..281985Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 281104..281985 +
1690790191.835126-CDS-D-herbacea_F_contig107:281103..2819851690790191.835126-CDS-D-herbacea_F_contig107:281103..281985Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 281104..281985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig107.671.1

>prot_D-herbacea_F_contig107.671.1 ID=prot_D-herbacea_F_contig107.671.1|Name=mRNA_D-herbacea_F_contig107.671.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=294bp
MDATASKVDHPLFLVLDAKFHPSAAFHAEIRDLRAARVGASVGGEVYHSL
LPVLGAENLLLTAFDAVFRDLRAALMCAPLRGNVDHAVLPMFRAEFALAA
AVYPVRRAFDATNLSTPFLGNVDHPRYFVLDTELPPTAFHAVSRNLQAAF
TDATPARNIDHPLFLVLGAKFHPSAAFHAVMRVLRAAFMDATPARNVDHP
LFLVLGAKYHPSGAFHAVIRDIRAGLIRAPLHGNIDHAVLPMFGAKFALA
AAVHPVHRILEAALLTTPFVGKVDHSRYFMLDTEPPPAAFHAV*
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mRNA from alignment at D-herbacea_F_contig107:281082..282173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig107.671.1 ID=mRNA_D-herbacea_F_contig107.671.1|Name=mRNA_D-herbacea_F_contig107.671.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1092bp|location=Sequence derived from alignment at D-herbacea_F_contig107:281082..282173+ (Desmarestia herbacea DmunF female)
TGGGTCGCCTCGAGCAGCCTTCATGGACGCAACTGCGAGTAAGGTTGATC
ATCCCCTCTTCCTTGTGTTGGACGCAAAATTCCACCCTTCTGCTGCCTTC
CACGCCGAAATAAGGGATCTTCGAGCAGCTCGAGTGGGCGCATCTGTTGG
TGGCGAGGTGTACCATTCTCTCCTCCCTGTGCTGGGCGCAGAAAACTTGC
TGCTTACTGCCTTCGATGCCGTATTTCGAGATCTTCGAGCAGCTTTGATG
TGCGCACCTCTTCGTGGTAATGTTGACCATGCTGTCCTTCCTATGTTCCG
CGCAGAATTCGCGCTTGCCGCTGCCGTCTACCCCGTACGTAGGGCCTTTG
ATGCAACCAACTTGTCTACACCTTTTCTTGGAAATGTTGACCATCCCCGC
TACTTTGTGTTGGATACAGAACTGCCGCCCACCGCCTTCCATGCCGTATC
CCGGAATCTTCAAGCAGCCTTCACGGACGCAACTCCTGCGAGAAACATTG
ACCATCCCCTCTTCCTTGTGTTGGGCGCAAAATTCCACCCTTCTGCTGCC
TTCCACGCCGTAATGAGGGTTCTTCGAGCAGCCTTTATGGACGCAACTCC
TGCGAGAAACGTTGACCATCCCCTCTTCCTTGTGTTGGGAGCAAAATACC
ACCCTTCTGGTGCCTTCCACGCCGTAATAAGGGACATTCGAGCAGGTTTG
ATACGCGCACCTCTTCATGGCAATATTGACCATGCTGTCCTTCCTATGTT
TGGAGCAAAATTCGCGCTTGCCGCTGCCGTCCACCCCGTACATAGGATTC
TTGAGGCAGCCCTCTTGACTACACCTTTTGTTGGAAAGGTCGACCATTCC
CGCTACTTTATGTTGGATACAGAACCGCCGCCTGCCGCCTTCCATGCCGT
ATGACGGGGACTTCGAGCAGCCTTCATGGCGGCACCTTGTTGTGGCTATG
TTGACCATCCCCTCTTCCTTGTGTCGGAGGAAAATTTTTCGCCTTTTGCT
GCCTTCACCGCCGAAATAAGCAAGTGTCGAGCAGTTCGAGGGGGTGCATT
TCCTGCCGGCAACGTTGACCACCCCTGCCTTGGCGTGTTGTG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig107:281082..282173+

>mRNA_D-herbacea_F_contig107.671.1 ID=mRNA_D-herbacea_F_contig107.671.1|Name=mRNA_D-herbacea_F_contig107.671.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1764bp|location=Sequence derived from alignment at D-herbacea_F_contig107:281082..282173+ (Desmarestia herbacea DmunF female)
ATGGACGCAACTGCGAGTAAGGTTGATCATCCCCTCTTCCTTGTGTTGGA
CGCAAAATTCCACCCTTCTGCTGCCTTCCACGCCGAAATAAGGGATCTTC
GAGCAGCTCGAGTGGGCGCATCTGTTGGTGGCGAGGTGTACCATTCTCTC
CTCCCTGTGCTGGGCGCAGAAAACTTGCTGCTTACTGCCTTCGATGCCGT
ATTTCGAGATCTTCGAGCAGCTTTGATGTGCGCACCTCTTCGTGGTAATG
TTGACCATGCTGTCCTTCCTATGTTCCGCGCAGAATTCGCGCTTGCCGCT
GCCGTCTACCCCGTACGTAGGGCCTTTGATGCAACCAACTTGTCTACACC
TTTTCTTGGAAATGTTGACCATCCCCGCTACTTTGTGTTGGATACAGAAC
TGCCGCCCACCGCCTTCCATGCCGTATCCCGGAATCTTCAAGCAGCCTTC
ACGGACGCAACTCCTGCGAGAAACATTGACCATCCCCTCTTCCTTGTGTT
GGGCGCAAAATTCCACCCTTCTGCTGCCTTCCACGCCGTAATGAGGGTTC
TTCGAGCAGCCTTTATGGACGCAACTCCTGCGAGAAACGTTGACCATCCC
CTCTTCCTTGTGTTGGGAGCAAAATACCACCCTTCTGGTGCCTTCCACGC
CGTAATAAGGGACATTCGAGCAGGTTTGATACGCGCACCTCTTCATGGCA
ATATTGACCATGCTGTCCTTCCTATGTTTGGAGCAAAATTCGCGCTTGCC
GCTGCCGTCCACCCCGTACATAGGATTCTTGAGGCAGCCCTCTTGACTAC
ACCTTTTGTTGGAAAGGTCGACCATTCCCGCTACTTTATGTTGGATACAG
AACCGCCGCCTGCCGCCTTCCATGCCGTATGAATGGACGCAACTGCGAGT
AAGGTTGATCATCCCCTCTTCCTTGTGTTGGACGCAAAATTCCACCCTTC
TGCTGCCTTCCACGCCGAAATAAGGGATCTTCGAGCAGCTCGAGTGGGCG
CATCTGTTGGTGGCGAGGTGTACCATTCTCTCCTCCCTGTGCTGGGCGCA
GAAAACTTGCTGCTTACTGCCTTCGATGCCGTATTTCGAGATCTTCGAGC
AGCTTTGATGTGCGCACCTCTTCGTGGTAATGTTGACCATGCTGTCCTTC
CTATGTTCCGCGCAGAATTCGCGCTTGCCGCTGCCGTCTACCCCGTACGT
AGGGCCTTTGATGCAACCAACTTGTCTACACCTTTTCTTGGAAATGTTGA
CCATCCCCGCTACTTTGTGTTGGATACAGAACTGCCGCCCACCGCCTTCC
ATGCCGTATCCCGGAATCTTCAAGCAGCCTTCACGGACGCAACTCCTGCG
AGAAACATTGACCATCCCCTCTTCCTTGTGTTGGGCGCAAAATTCCACCC
TTCTGCTGCCTTCCACGCCGTAATGAGGGTTCTTCGAGCAGCCTTTATGG
ACGCAACTCCTGCGAGAAACGTTGACCATCCCCTCTTCCTTGTGTTGGGA
GCAAAATACCACCCTTCTGGTGCCTTCCACGCCGTAATAAGGGACATTCG
AGCAGGTTTGATACGCGCACCTCTTCATGGCAATATTGACCATGCTGTCC
TTCCTATGTTTGGAGCAAAATTCGCGCTTGCCGCTGCCGTCCACCCCGTA
CATAGGATTCTTGAGGCAGCCCTCTTGACTACACCTTTTGTTGGAAAGGT
CGACCATTCCCGCTACTTTATGTTGGATACAGAACCGCCGCCTGCCGCCT
TCCATGCCGTATGA
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