mRNA_D-herbacea_F_contig107.669.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig107.669.1
Unique NamemRNA_D-herbacea_F_contig107.669.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: D7FMI1_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI1_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 6.790e-72
Identity = 104/135 (77.04%), Postives = 117/135 (86.67%), Query Frame = 2 
Query:    2 WMSSEVYSEPVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALGDKQYSIDVSSSNRFLYYGKKSADRPPGWTPPTRR 406
            WMSSEVYSEP++ F CP+ P  GYP EWPL D+L+NWNPGNASG+P  +FLGVCRFDYQ ELHKAQAY L EVPFIV+NVP LDRAV EWS+P KL++ALGD  YSIDVSSS+RFLYYGK+S DRPPGWTPPTRR
Sbjct:    9 WMSSEVYSEPIKRFSCPEEPEAGYPTEWPLLDLLANWNPGNASGVPERHFLGVCRFDYQTELHKAQAYSLREVPFIVFNVPELDRAVQEWSNPAKLTAALGDHLYSIDVSSSHRFLYYGKRSWDRPPGWTPPTRR 143
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A6H5LQR5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQR5_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 6.000e-67
Identity = 103/135 (76.30%), Postives = 116/135 (85.93%), Query Frame = 2 
Query:    2 WMSSEVYSEPVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALGDKQYSIDVSSSNRFLYYGKKSADRPPGWTPPTRR 406
            WMSSEVYSEP+E F CP+ P  GYP EWPL D+L+NWNPGNASG+P  +FLGVCRF+YQ ELHKA+AY L EVPFIV+NVP LDRAV EWS+P KL++ALGD  YSIDVSSSNRFLYYGK+S DRP GWTPPTRR
Sbjct:  651 WMSSEVYSEPIERFSCPEEPEAGYPTEWPLLDLLANWNPGNASGVPERHFLGVCRFNYQTELHKARAYSLREVPFIVFNVPELDRAVQEWSNPAKLTAALGDHLYSIDVSSSNRFLYYGKRSWDRPLGWTPPTRR 785
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A7S2SVX9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVX9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.350e-30
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 2 
Query:   47 CPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALGDKQYSIDVSSSNRFLYYGKKSADRPPGWTPP 397
            CP  PAP YP+E+P+ +V SNWNP +   +P  +F G+CRFD+Q +  +A++Y  AEVPFIV  VP++D AV +W D   L  +LG K Y  + S +N F+Y+ +   ++PPGW PP
Sbjct:   98 CPPQPAPDYPVEFPILNVTSNWNP-DTPDVPPRHFAGLCRFDFQSQRDQAESYRQAEVPFIVQGVPSVDAAVDKWRDDKYLEKSLGSKAYLTEYSENNHFMYF-QSGGNKPPGWEPP 212
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A6H5JFB5_9PHAE (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFB5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.600e-30
Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 2 
Query:    8 SSEVYSEPVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALG-DKQYSIDVSSSNRFLYYGKKSADRPP----------GWTPPT 400
            SS+  S P+E+F CPD P   YP  +P  DV+++WNP +A  +P  ++L  CRFDYQREL KA+ Y  AE PFI+YN+P++D A   WSDP  +    G  ++Y+ + S+ N F+Y+  K A +             W PPT
Sbjct:  480 SSKFKSLPMEAFECPDTPPADYPKGYPAMDVINHWNPDDAEQVPPLHYLSTCRFDYQRELAKAERYSAAEKPFILYNIPSVDAASGRWSDPAYMEKIFGATRKYATEHSTDNHFMYFNHKLAQQAKHGQHSELNLTDWKPPT 621
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A835Z3G1_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.280e-27
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2 
Query:    2 WMSSEVYSEPVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQ--RELHKAQAYGL--AEVPFIVYNVPALDRAVLEWSDPMKLSSALGDKQY 316
            +MSS   SEP E F CPD P   YP EWP+ D++ NWNP NAS +P  ++L +CRFDYQ  ++L KA A+    AE PFIV+N P L  A   W DP+ L  A G K +
Sbjct:  527 FMSSRTASEPFEPFSCPDEPPEDYPREWPMLDLIHNWNPDNASYVPPNHYLSICRFDYQDPQDLAKASAFAYRDAEKPFIVFNAPQLTAAAQRWQDPLYLDKATGAKTF 635
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A7S2FL26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL26_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.310e-24
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 2 
Query:   47 CPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALGDKQYSIDVSSSNRFLYYGKKSADRPPG---WTPPT 400
            CP  P P YP ++P+ D++ NWNP  A   P  ++  +CRFDY  +L KA AY  AE+PFIVYN P  +  V +W+ P  L   LG ++Y  +VS +N F+Y+   S+ R  G   W PPT
Sbjct:  122 CPAVPPPNYPEQFPIMDLIDNWNPDQAEA-PAKHYHALCRFDYATDLEKAFAYREAELPFIVYNTPEAEDVVQKWNQPDYLEKFLGTERYRTEVSHNNHFMYFSG-SSPRGKGNKAWRPPT 240
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A7S1XWE3_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWE3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.950e-24
Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 2 
Query:    5 MSSEVYSEPVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALGDKQYSIDVSSSNRFLYYGK 361
            +S   ++ P E   CPD P  GYP  +P+ +V SNW P +   +P  ++  +CRFDY+ EL K  AY  AEVPF+VYNVPA++    +WSD   L   LG   +  + S  N F+Y+ K
Sbjct:  610 ISDTGHTSPFEQVECPDVPEEGYPRSYPILNVTSNWPPDDTR-VPKQHYGSLCRFDYETELDKCFAYRDAEVPFVVYNVPAVEETAAKWSDLKYLDGRLGGSNFRTEHSKDNHFMYWQK 727
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A7S4J512_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J512_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.690e-19
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 2 
Query:    2 WMSSEVYSEPVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALG-DKQYSIDVSSSNRFLYYGKKSADR-PPGWTPPT 400
            ++  E  S P +   CP  P  GYP+ WP+ DVL NWNP +A+     Y  G+CRFD   E  KA  Y  AE+PF++ + P +   V  W+ P  L+  LG    Y  D + +N  +++  K+  R P GW  PT
Sbjct:  179 YVPIEGESMPYDVNDCPSAPPEGYPMAWPVLDVLENWNPDDATPRARIY-QGLCRFDAATEYDKALTYRKAELPFVIRDDPVVLPTVERWNQPEYLTRILGRTATYRSDYAETNHLMFFRTKNLKRVPEGWKEPT 312
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: B5YNB0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNB0_THAPS)

HSP 1 Score: 87.0 bits (214), Expect = 2.750e-17
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 2 
Query:   47 CPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSAL---GDKQYSIDVSSSNRFLYYGKK 364
            CP++P  GYP++WP+ +VL NW+P + +     Y  G C FDY+ E+ KA  Y  AE+PFIV N PA+ RA   WS P  +   L    D+    + S +N F+Y+  K
Sbjct:  181 CPEYPPEGYPMQWPVLEVLDNWSPDDPTPHHEIY-QGWCIFDYRTEMEKANNYREAELPFIVRNDPAVARAAERWSRPEFMERLLMGDEDQMRRTEYSPNNHFMYWVDK 288
[Close]
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Match: A0A7S2PJY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJY4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.710e-16
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:   29 PVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFLGVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALGDK---QYSIDVSSSNRFLYYGKK 364
            P +   CP++P  GYP++WP+ +V  NW   +A+     Y  G+C FDY+ ELHKA  Y  AE+PF+V + PA  R    W  P  L   L  K   Q   + S +N F+Y+  K
Sbjct:  197 PYDIHNCPEYPPEGYPIQWPILEVTKNWPTDDATPRHEIY-QGLCVFDYRTELHKADNYRKAELPFVVRDDPASARTAERWMHPGYLDKLLMGKEDIQRRTEYSPNNHFMYWVDK 310
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FMI1_ECTSI6.790e-7277.04JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LQR5_9PHAE6.000e-6776.30JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2SVX9_9STRA2.350e-3046.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JFB5_9PHAE4.600e-3041.55JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z3G1_9STRA4.280e-2749.54JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2FL26_9STRA3.310e-2442.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XWE3_9STRA3.950e-2441.18Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
A0A7S4J512_9STRA1.690e-1937.04Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B5YNB0_THAPS2.750e-1740.37Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2PJY4_9STRA1.710e-1638.26Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:259499..264328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue1.2e-57
Seed eggNOG ortholog2880.D7FMI1
KEGG koko:K10277
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
EC1.14.11.27
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons4
Model size409
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.669.1prot_D-herbacea_F_contig107.669.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig107 259503..264328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927478.4593232-UTR-D-herbacea_F_contig107:259498..2595021622927478.4593232-UTR-D-herbacea_F_contig107:259498..259502Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 259499..259502 +
1690790192.4912958-UTR-D-herbacea_F_contig107:259498..2595021690790192.4912958-UTR-D-herbacea_F_contig107:259498..259502Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 259499..259502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927478.4742737-CDS-D-herbacea_F_contig107:259502..2596631622927478.4742737-CDS-D-herbacea_F_contig107:259502..259663Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 259503..259663 +
1690790192.5031211-CDS-D-herbacea_F_contig107:259502..2596631690790192.5031211-CDS-D-herbacea_F_contig107:259502..259663Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 259503..259663 +
1622927478.4879806-CDS-D-herbacea_F_contig107:260894..2609461622927478.4879806-CDS-D-herbacea_F_contig107:260894..260946Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 260895..260946 +
1690790192.5133424-CDS-D-herbacea_F_contig107:260894..2609461690790192.5133424-CDS-D-herbacea_F_contig107:260894..260946Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 260895..260946 +
1622927478.5028782-CDS-D-herbacea_F_contig107:262632..2627331622927478.5028782-CDS-D-herbacea_F_contig107:262632..262733Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 262633..262733 +
1690790192.5274243-CDS-D-herbacea_F_contig107:262632..2627331690790192.5274243-CDS-D-herbacea_F_contig107:262632..262733Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 262633..262733 +
1622927478.513215-CDS-D-herbacea_F_contig107:264237..2643281622927478.513215-CDS-D-herbacea_F_contig107:264237..264328Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 264238..264328 +
1690790192.536957-CDS-D-herbacea_F_contig107:264237..2643281690790192.536957-CDS-D-herbacea_F_contig107:264237..264328Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 264238..264328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig107.669.1

>prot_D-herbacea_F_contig107.669.1 ID=prot_D-herbacea_F_contig107.669.1|Name=mRNA_D-herbacea_F_contig107.669.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=135bp
MSSEVYSEPVESFPCPDHPAPGYPLEWPLADVLSNWNPGNASGIPLTYFL
GVCRFDYQRELHKAQAYGLAEVPFIVYNVPALDRAVLEWSDPMKLSSALG
DKQYSIDVSSSNRFLYYGKKSADRPPGWTPPTRR*
back to top

mRNA from alignment at D-herbacea_F_contig107:259499..264328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig107.669.1 ID=mRNA_D-herbacea_F_contig107.669.1|Name=mRNA_D-herbacea_F_contig107.669.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4830bp|location=Sequence derived from alignment at D-herbacea_F_contig107:259499..264328+ (Desmarestia herbacea DmunF female)
GTGGATGTCGTCCGAAGTGTACAGCGAGCCTGTGGAGAGTTTCCCATGCC
CGGACCATCCCGCCCCGGGGTACCCGCTAGAGTGGCCCCTGGCCGATGTG
CTGTCCAACTGGAATCCGGGAAATGCATCCGGAATTCCGCTGACTTATTT
TCTGGGTGTTTGCAGGTGACTCAAGAGAGGAAAAATACGCGAAACTATCG
TGGGGGCTGGTAGGGGGGGGGGTGCTCAGCGCACCGAAGAAAAATCCCGG
AATATTCTGGAATGGTGAGGGGGGGGGATATGGCGTAACGCGAAAAGTGG
AAGAGAAGGGTTTGAAAGGTCGACTATAATAGTGTGCCAATAAACGATGC
TTGTCTTCGTTCATTTGTCTACGGGTTTCCCGCTTCGTGCTGTGGATGTC
CCTGTTTTTGTGTTATCCCCCGTAGTCTGTTATTTTTGGTTAGTCTCGTT
TTTTGTGCATGGTTGTCTTTGCCGGTATTTTGTTTTTCGTAGACAACAAC
TAGACTATATTTGCAGCCACTAGGGAAGACACGTTACCCCTGTCCGCTGA
TACATTGGATTGTTGGAACGACCCTAGGAAAGTATCGCGTGTGATCACAT
TCCGGGGGGAGGAGTACATGAGTAGACTACGCGCGAACGTGTATCACGTG
GGTACCGTTGGGTACCTCGAGTGTATGTATCGCGGCATCGGTACGTATGC
GTGTCCTGTTCCGTCATGGCGTAGGGGGAAACTGCATCGAATACGTGTCT
ACTTTGAGCGCCATTACGTTTTGAATGTGATATTATAACATCTATCTCCT
TTTGTAGCTTCATGAAAGTTGTGGGGGTCTTGAAAACCCATCTGCCACGG
ACGAGATGCGTCCAAAACGCAGCATTCCAAGGGTAAGCTACAACACAGAT
AAATACCATTACACAGATCACAACATCCCCCCTCGATTCTTGGGAAAATA
GTCGCGCCTACCGAATGTGGCAACGTTTGGCTTCCTGGTTGCAATATTTT
GGCGTACATTACAACGTAAAGGTGCGCTGACTACAGTACAGCAGCAGCTG
ATTACAACCATTGTGGAACGCAGCCTGGACCGGCAAAATACTCGGCGTAC
TACGTCGTTCAACCATTGTTTGGATGCGCGGTCAATTTTCCATGACTACT
ACTGTGACATTCATTGTCATACCCGGCTATCTCCAAGGCCCTGCGACATA
CCCGCGCTATAGTGACAAAAAAATGCATTCTACATACGAAGTACAAGGTT
AATTCGGCGATAAAACATGGTTAAAACCAATTCGTACACCTCGCCGCCAG
TATTTATTTATTTTAAATTGCTCGGCACCAAAAACAACTAAAGCGTAATT
TTCTGCATAAACCCTTCCTTTTCCTTGCACTCACTGTCTATGATAGGTTT
GACTACCAACGAGAGCTGCACAAGGCGCAGGCGTACGGACTAGCTGAGGT
GAGTCGATGAGCATCTTCCGAGGCATCCGTAGCATTTCCTTTGTGTTGTT
TTTTGTTATTGCAACATAAATCGTTTAGCCGACCATACACTCTCCACGCC
ACGGACTCTAGCTGAGGTTGGTCGATGAGCGTCTCCCGAGGCCTCTCCGC
AGCATTCGTTTTGTGTGTTTTTTTTTGTGCAACAGGGATTATTTAGCCGA
CCATACACTCTGTTTTTTTTTTTTTTTTAGCCTATGTATAATTAATTCGA
TGAAAGTCGACGAGCTTTGGGAATGCCGAACCCTGTGCGCGATAAACACA
ATGGTTGGCATGTACCGGGGGGGGGAAGGGTCGGTAGCTGTGAGCACGGC
TTGCTCAGACAGGTGCGCTGAGCGATGAGTAGAAGGGCTCCTGTGATAAG
TTGGACACGAAAGTTAAAATGATACGAAGTAGATAAAAAGAAAGGAGGGG
GGGTACCCTTGCGACTGGTTTGAGTATTTCTGGGGAAGGTGAGGCCTCCG
AACGGGCCGTCAGATCACTACAACACCGTGGTTAACGGCACTGTCCAAAA
ATGGAATTCCAAAATGCAATTACAAAGGTTTATAGAGATTCCCGGGGGGA
ACTTGCATGCTGTACGATCACAAAAGAATTCATCGCCGTACATCGTTCTT
CCTAATGCCATTTGTGTGAATGCATACATTTTGTGCTACGTTGTTGTTAA
TTACAAATTCATAGAATCAGCCGCGGCGTTCTAAACTGCTTCGGGGTTCC
AGGGATAAGCGTCAACTTCACTGTGTGGTATATTATTTTTGTGTGTTTTT
TTATGGGAGTGAAGAGTGGGCAGTGTTTTCTTGTTTTATGCGGGGGCGCT
TGTATGACCTGCGAGGGGTCACGCAAACCCTACGCGCATCGTCGATGGAT
AGGTTGTCGGTGGGATTCCTCACGCGCGTGAGGTTGACGGGGGGAGGGGG
TACTACTGTACCTGCCCTGCCTCTCTAGCCCTCATTGGCGTCACGACAAG
CTTCTGCTTGTGTGGGCATTGGCTTTTGTGGGCTTAGCAAGTACCTCGTT
TGATGATATTGTTGTACATATTGAGCAATCAATGGCTTAAAGTATTTTCA
CGATTAAGGAAGATTTCGATTTGTTGTTCGTTTTTTTTTTTTTTGTAGAA
TTTGGGAACGCCCCCCCGCACTTGTTCCATCGCGTACTTACTGCTCACAC
CTGGAGTAGTTGATACGGGCGCATGATTTATGTGCGTGTCTATTACTGCA
GTTGCATCGCACGAATCGACTCTTTCCGATTTTATCATGCGCGTATGAAA
GTAACTCGACGTCTGTGGTTGGTTGCACAGTTTAAAGGGTTTCGTCGCGG
AATACCGAAAAAGGGAATGAACGAAAAACAAACAACGCACGATAAGGGAT
AATGTGAAAACACAACATGAGTTAAACTTGATTATTCAGTAGTTGCAACC
GGTAACGTGTGTACTTTTTCACCTGTGGCGCCTTTTAGTCGCTAGCCTTC
GCCAGGTATCCTCGTATGGGTGTTTTGTGTGTATGTAAAATCCAATGTAA
CACGTACGGGAGGGACTACTGTTGTCCCTTGGGTTGAGTCTGGTCACGCT
ACGCTACCCTGGAGATAGACTAGGCCGTGTGTGTGTGTGTGTTTGTGTGT
TTTAACGTTCATGTCTTGTTATTTTGTTTCGCAGGTGCCGTTTATTGTGT
ACAACGTGCCGGCATTGGACCGCGCCGTTTTAGAGTGGAGCGATCCGATG
AAGCTGTCCTCGGCGTTAGGAGACAAGCAGTACAGGTAAGTTTGGATGAG
CCGCCTTTGCGTTAAACGTTTTTTGTCGCTCGGATCTTTATAGCATGTTC
GTTTTTATTAGATGTATGATTAGTAGCAACGTGGACTGTTCAGCAGTTTC
GGAAAATTATGTCACTTAACCCTGTAACCCTAACCCTACCGGACACACGA
ACACACCTATACTAATAGCAAGTCAAAACCTCCGTAAAGATCCGAGCTAC
TAACCATAGTGCTAAACCTACTGGTTGGGATCCTGATATATGAAATACAA
GGAAGCAAGATGATGAAAATGGCGACTGCTCGCTGGGTAGGTGGGGGTGA
TTTAAGGATCTCGACGCACAGAGTACCCAACAAGCTAAGAGTTGGCGCAT
CCCGATGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTATATGTAGCTATCAATTAATGAGAGATAGGTGAGAATGAATCAGTA
TCCTTTGAATTCAGTTTTAGTTCGTTTTGTAGAAATAAGGTGCATCATGG
GTCAGGGCCTAGCACGTGAGAGAGACAAATTATTAAGTGCAGACACACAA
GTGACTTGAAAAACACCAGACGAGATTTGTTTTTTTCGGCCGAAGAGACC
CCCCAGTTGCCGAGGTAGTCTTACAACTGCTTTAAGACAGGATCTTTATA
GCATATTCGTTTTTGTTATACTAGCAGTACCAAATGTGAGCTGTTGAGCA
GTTCGAAATAATTCTAGAGTAGAACTGAGGCATTCTGCGCTTCGAAGCCA
CGGGCACCGCAACAGGCGCTTGCAGGCGTGTTGCGCTCTGCGCTACCCCG
TGTCAAAACAATTTCTACTCACAAGTGGGGGTTCACCTTCAAGCGGGAAA
GTACTGATCAAGATGGAATGGCTGCATCCGTTTCCGAGGCGCGCAAGCGC
AACCACTACGCTCGACCCTGACCCCTAACGACCACACTAGTGCAATAGAG
AGTGTAACCCCCTCCAAAGATCCTGCCCAAGCAGTTATAAAGCCTACTGC
AGTTGACACTGGAGAAATACTATTTCCCATCCTGTACACCCCGTCATGCG
ATTTGCCGACCGGCATCACTCAACATGATGCACATCCTGCCCGTCTTAGA
GTAGTTTACGTACTTCGTCCAACACCCGAGGGTAGAGGCTCATCAACCAA
TGACATTCATCAACCAGTTAATCAATCATCCAGTATCATCCAACCAGTCA
ACTAATCAACCAATTAGCCAACAAACCAACCAAGCAACTAACCTTGAACT
AACTGACTGACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAA
CTAACTAACTAACAAACCGACTAACCAACTAACCAACCATCCAATTAAAT
AACCAACCAACCAATCAACCAACCAACCAACCAACGAATCAATCAATCAA
TCAATCAACCAATCAATCAAGGCCAGCAAGTAAACCAATCAAAACATTAT
CTCCCTCTCTCTCTCTCTGTATGTGTTTGGTTGGCGCAGTATTGACGTCT
CCTCCAGCAACCGCTTTCTTTACTACGGAAAAAAAAGCGCCGACCGTCCG
CCTGGATGGACGCCACCCACCCGGAGGTGA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig107:259499..264328+

>mRNA_D-herbacea_F_contig107.669.1 ID=mRNA_D-herbacea_F_contig107.669.1|Name=mRNA_D-herbacea_F_contig107.669.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=810bp|location=Sequence derived from alignment at D-herbacea_F_contig107:259499..264328+ (Desmarestia herbacea DmunF female)
ATGTCGTCCGAAGTGTACAGCGAGCCTGTGGAGAGTTTCCCATGCCCGGA
CCATCCCGCCCCGGGGTACCCGCTAGAGTGGCCCCTGGCCGATGTGCTGT
CCAACTGGAATCCGGGAAATGCATCCGGAATTCCGCTGACTTATTTTCTG
GGTGTTTGCAGATGTCGTCCGAAGTGTACAGCGAGCCTGTGGAGAGTTTC
CCATGCCCGGACCATCCCGCCCCGGGGTACCCGCTAGAGTGGCCCCTGGC
CGATGTGCTGTCCAACTGGAATCCGGGAAATGCATCCGGAATTCCGCTGA
CTTATTTTCTGGGTGTTTGCAGGTTTGACTACCAACGAGAGCTGCACAAG
GCGCAGGCGTACGGACTAGCTGAGGTTTGACTACCAACGAGAGCTGCACA
AGGCGCAGGCGTACGGACTAGCTGAGGTGCCGTTTATTGTGTACAACGTG
CCGGCATTGGACCGCGCCGTTTTAGAGTGGAGCGATCCGATGAAGCTGTC
CTCGGCGTTAGGAGACAAGCAGTACAGGTGCCGTTTATTGTGTACAACGT
GCCGGCATTGGACCGCGCCGTTTTAGAGTGGAGCGATCCGATGAAGCTGT
CCTCGGCGTTAGGAGACAAGCAGTACAGTATTGACGTCTCCTCCAGCAAC
CGCTTTCTTTACTACGGAAAAAAAAGCGCCGACCGTCCGCCTGGATGGAC
GCCACCCACCCGGAGGTGATATTGACGTCTCCTCCAGCAACCGCTTTCTT
TACTACGGAAAAAAAAGCGCCGACCGTCCGCCTGGATGGACGCCACCCAC
CCGGAGGTGA
back to top