mRNA_D-herbacea_F_contig107.666.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig107.666.1
Unique NamemRNA_D-herbacea_F_contig107.666.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig107.666.1 vs. uniprot
Match: A0A6H5L838_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L838_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.050e-19
Identity = 58/93 (62.37%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   25 MVWGSLPSRMMRSGVQAGLRCART-SARLGSRAARRRGVGSAAVKASYVPFP--AFSV-AETALPVLADLPLLQISHPLACQEPEGDEDGDGR 291
            MVWGSLP R+ R  +QAGLRCART S R G R A+R G  S A K   VP P   F V +E ALP+L DLPLL IS  LAC EPEGD+DGDGR
Sbjct:    1 MVWGSLPPRVTRVAMQAGLRCARTGSRRSGGRYAKRGGFLSTAAK---VPLPDITFDVESEPALPLLGDLPLLLISQSLACPEPEGDDDGDGR 90
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L838_9PHAE2.050e-1962.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:165591..170196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000370.1
Exons4
Model size735
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.666.1prot_D-herbacea_F_contig107.666.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig107 166032..170172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927478.288834-UTR-D-herbacea_F_contig107:165590..1660311622927478.288834-UTR-D-herbacea_F_contig107:165590..166031Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 165591..166031 -
1690790192.3691568-UTR-D-herbacea_F_contig107:165590..1660311690790192.3691568-UTR-D-herbacea_F_contig107:165590..166031Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 165591..166031 -
1622927478.3442135-UTR-D-herbacea_F_contig107:170172..1701961622927478.3442135-UTR-D-herbacea_F_contig107:170172..170196Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 170173..170196 -
1690790192.4154813-UTR-D-herbacea_F_contig107:170172..1701961690790192.4154813-UTR-D-herbacea_F_contig107:170172..170196Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 170173..170196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927478.2989886-CDS-D-herbacea_F_contig107:166031..1660751622927478.2989886-CDS-D-herbacea_F_contig107:166031..166075Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 166032..166075 -
1690790192.381943-CDS-D-herbacea_F_contig107:166031..1660751690790192.381943-CDS-D-herbacea_F_contig107:166031..166075Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 166032..166075 -
1622927478.3122416-CDS-D-herbacea_F_contig107:168579..1686641622927478.3122416-CDS-D-herbacea_F_contig107:168579..168664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 168580..168664 -
1690790192.39062-CDS-D-herbacea_F_contig107:168579..1686641690790192.39062-CDS-D-herbacea_F_contig107:168579..168664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 168580..168664 -
1622927478.3234153-CDS-D-herbacea_F_contig107:169417..1694781622927478.3234153-CDS-D-herbacea_F_contig107:169417..169478Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 169418..169478 -
1690790192.3984437-CDS-D-herbacea_F_contig107:169417..1694781690790192.3984437-CDS-D-herbacea_F_contig107:169417..169478Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 169418..169478 -
1622927478.3337643-CDS-D-herbacea_F_contig107:170092..1701721622927478.3337643-CDS-D-herbacea_F_contig107:170092..170172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 170093..170172 -
1690790192.407068-CDS-D-herbacea_F_contig107:170092..1701721690790192.407068-CDS-D-herbacea_F_contig107:170092..170172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 170093..170172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig107.666.1

>prot_D-herbacea_F_contig107.666.1 ID=prot_D-herbacea_F_contig107.666.1|Name=mRNA_D-herbacea_F_contig107.666.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=90bp
MVWGSLPSRMMRSGVQAGLRCARTSARLGSRAARRRGVGSAAVKASYVPF
PAFSVAETALPVLADLPLLQISHPLACQEPEGDEDGDGR*
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mRNA from alignment at D-herbacea_F_contig107:165591..170196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig107.666.1 ID=mRNA_D-herbacea_F_contig107.666.1|Name=mRNA_D-herbacea_F_contig107.666.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4606bp|location=Sequence derived from alignment at D-herbacea_F_contig107:165591..170196- (Desmarestia herbacea DmunF female)
AGAGGCTCTCTCTGTTCTTCTTCCATGGTGTGGGGTTCGCTTCCGTCGCG
GATGATGCGATCGGGCGTGCAGGCGGGCCTGCGCTGTGCTCGAACAAGTG
CAAGGTAAGTGTTGAAGGCACCATGTGTGTGCGTGTTTGTCTCTGTTTTT
TCTCTGGATGTTAGTGGTTGTCTCTGTTGCTCTGCGTGGTGCATACAGAC
ACGCAGGGGGGCCTGCTGTGTAAATCTGCATCTCTGTCTTCTGGGCGGTT
GTTCTGTGTCGGTGTTCCTGTCGTTGTTGTCCGCATGTTCTCTGCATCGT
TTGTCGTCTCCGCATGAGCCGTCCAGCAACGTGAGAGAGCTCTGCCTAGG
TGCCGCCTCTCTCATCGGAAAGCTTCACGACAGTACTGTAGTAATAGTAG
TAATGCAGTCAACGCGGCGCAATGCCATGAGCTTCGGATTGTTCAGTGAC
ACACACTACACCCGCTACACATCACAGCACAATGTTTCGGTGCGCGAACG
GGGTGAGCCTTCGTTCCATCCTACGAGTATGGCTACGCCGTATCAAATAG
TGTGTATTCTGTAGACCCATGCTCCTAATCGCGCAGCCTGTTTTGTTCTT
ATTGCTGTGGTTTGAGTGCGGGCAACGGCCAGTAGCTGTACATTGCAGCA
TTTTCAGCACTTTGACATGTTCAGGTCACCATGCCGCTGTGCGCCTGTGC
TTTTCCCGTGTGCGGCAGGCTTGGCAGTAGAGCGGCGAGGCGTCGAGGAG
TAGGCTCCGCGGCAGTGAAGGCGAGCTATGTTTGTGTATAGTTGAACATC
TTGTCACTTGAGAGTTAGAGACAACCGTCAAAGTTGCAGGACGGCCAACT
GGCATGATTTTCGGCTTGGTTTGGTTTGGGTCGGAAAGCCGACTCGTGAA
AGAGACGGAGCGATTGCTGTTGGTGTGTCGTGTGCAGTACGTCGACGGCA
AGCCTAACCCGTGCAACTGTACGTGTTGGCGAATCCCCTTGTGGTACTCT
GCATGCGTATACAATAGTGCACACACGAAGTATATACATATTCGCCTGCT
GCTGTTGCAACACGACGTGTTGTTGACCCCAGGGATTGCCCAACCTATCA
TGACAGTTCCCTGTGGCGTAGTAACGCAAGGATAGCGTATTAGAAGCAGA
TACCACAACAGTCCAAGCTGTATTAAAGAGTATGTTTAGCGTATTTGTGG
GACAGATCTTTAGATAGGTTTGACTCTCTTTTATATTGTGTTCGTTAGGT
TTCGGGTTAGGGTTAGTGATAGAATTTTCCGAACTGCTGAACAGTCATCG
TTGTTCCTACTGTAATCATATAGTAAAACAAGCATCCTAACTACTCGAGC
TACGAAAACGCTAAGGCAGCTGATACCATCCTTGTGAAACGCAGCGCGGG
CAGCCGAAAACCACCGGGGGCATCGTAACGTTCAGGCAATTCAGGTGCGC
AAGGTCAACGGTGGATGACCATGATATATTTTATCTTTGAGTAAACAACT
CCCCCCGCCTCGTTGCTTCCCACGATCCTCAGGTGCCATTTCCAGCGTTC
AGCGTAGCTGAAACTGCGTTGCCTGTCTTGGCGGATCTACCGCTTTTGCA
GATTTCACACCCCTTAGGTGAGAGCCAGGCCCGAATTTTGGACAGGGGGG
GTTCGTTTAGGGACGAGCATTTCAAACCATATTGGGTGCTCAATATCCGC
TTACAAAGCTTTCAGCGATGACAATGTTCCTGGTAGTTGTTGACGTCGCA
TTCATGTGTACGACTTGGACGGCGTGACGTGTTTCGGCCCGCACACTGGT
TCGCCCAAAGAGTCATCCGGAATGGAAACAACCTGGTGGATGCTTGATAA
ATGAATGGAGGCCCGCGCTCCTGTTGTGTTGTTAGACCCTGATTGGAAGG
TAGATAACGCTCTGATATTATTCTGTTGCTGTAGGGGTCCCCCAGTAAGG
CGGTCTGAGTAAGGCGGTATCCCTCAATAGGGCGGTCAAAATCGTTTGGC
ACGACTGGAACCCGCAATAAGGCGGTGACCGCCTTACTGAAGGATAGTCC
CTCGATAGGGCGGTCTACCGCCCTATTGAGGGCGGCCGACGCCTCCTAAC
CCCTCAGATTGGTGCTCGTACAGCAGTACATGCTCTCGTACGGCAGCACC
ACGCCACCAGGACACACTCAGGGGCTGGGTCAAAGCCAAAACACACCCGC
TAGACATGGAGTGTACCCTCACGGCAGCGCACGGGAAAGAGATAGTTCCA
GGGACCCTGCGGTGGACGGGATGACGCATTTTCTCAACAACTTCAGCTCG
CGAATGCGCCAATCAGACGAGCCGTGATCACTCACTGACAACGAGTTGGT
CAGTTTGTTGGTGAACCTGATCGTGGTCCCGGGAGAGTGTGCCAACGAGG
CCGCCATCCAAGCGGCTCAGATTTGGGCGACAGTGGAGGATCAGGAGGAC
GTCGTTAAAGCTATGCGATTGGATGCGGTGGACGAGATGAAGGAGTAGTT
TGAAGGCACTGGTGTGGAGGATGTGAACTTAATTGACGACGAGGAGGTGG
ACGGCGACAATGAGAACGCGGACAGGATGCAGGGCCATTGCGCCACCGTC
CTACGCTGAAATTTCCTTGTGCTTTGGCCTCCTAGAGAGGGCAGCGGGGT
AGTGCCGCAATAGAGACATTACCGACCACCTGCAGAAGGCCAGAATGGCG
TTCATCGAAGCGCATGCCTCTAAGCCAGTGCGACAGGCCGACATCAGGGG
ATTTTACTAGACGCGAGGAGGGGAGGGGGGGGCGTAAATTACTCATTAAT
TTGTTGCTTGCCTTAGTCATTTGACCATTTGACCATGCATCCCTTCCGAG
ACGGATCACCGTTCCATATCCTACATAAAAATGGTTTGCTTTTTTATCCC
CTTGCTGTTCGCCTTTTGTGGCCTCCGTCTATCTCCTAGGATAGCGAGGA
GGGGAGGGGGGGGGTAGCACAGCAGAGTTGTGCTGCATGGTTCCAGTGTT
GTGCTCCTGATCTTGTTACAGTAATGCTGCACTGTAGTGAATTGGAGCAC
CTACAGCAACGCGATGTTGGGGGTGCTAAGAATAATCTCAGTACGGCGTT
GTTGTTGTCAGGAAGACTATTAATAATGTTGAACAATATGTCCTGTCTAT
TCTGCTGTGATAAAATGGAAATATGAAAATACGATTTTACCAACAAGCAA
GTGTTCAATCATACGAGTCTGCATTCCTTACCCACGGTGGAGGACATTTG
AGTTCCTGTTCGTCGCCACAGCATTCCTTCATCACGCAGCCCTCTGTTAG
GTTAATAGCTACTAGCTAATATTTTGTAATGTACAACACACTAAATGTCG
ATATTTCCCTCGATAGGGCGGTAACCGCCTTAGTGAAGTAATCTCACAAC
CCCAATAAGGCGGTAACCGCCCTATTCACGAATATGCCCAAATAAGGCGG
TTTCTCGCAGTAAGGCGGTAATATGGAGGTGGCACGCCACCGCCTTACTG
AGGGACCCCTACTGTGGTTACATAGCACTATCCACTAGACCACTCAGTCA
CTACAAGGTACGATACTTCCTTGAAGTACGGTACTCGGTTGGGGTGTTTG
CCCGTATATATACATTTCAACATAAATGAACAAACTACGCTAATTCATCG
TGCAACGAAGCGCGTAGAATTTGCTACCGCTCACTGCTGTGTTGCTGTAT
AATTATACCCTATGCAATAATATGCTGCGCAAAGCTGGTGATACTTGGCC
CAGGGCATTTTTTGTGCACTTAGCCTACCGGTTGTTTCATGCGATGCCAG
ACACGCTGACAAGGAATCTAGTAGTCGAGAGTATTTTACAGACGCTCCAG
CAGCAGCGAGCACCGCTGCTCCCAGTCAACTGTAACTTGTGTTTTTGCCG
ACGAAAGGACCTATAACGGCCAGTGCCGGCATTTGGCCCGTTGAGTTCTC
GTTCGTGCTTCGTTCACAAGTTGGGTCAACACCGTTTTCGCGCAAACGCG
TCCGACGAAAAATTATTACCACGTCATACTCGTAGCATTCGAAATATTGC
GCTCCACCCCCGCCCCCCCCGCCCACCCACCCCCTCTACGTAAACACCTG
AACGTATTTGTCTGCCTTCAGCATGTCAAGAACCAGAAGGCGACGAGGAT
GGCGACGGCCGCTGACGGCGGCCCGCCCGGTTTCCTAGGGGGTTGTAAAC
GGGGCGGGAAAATATATTTTATTAGGAGCGGTGATCGGAGGGTAAGGTAC
ACAGGTGACCTGCAGGGGGGAGCGCACTGTGACTGAGCAAGGACCGCGTG
GGAGGCCAAAACCATTCTGTGAGATCTACTGCCAGCAGCAGCGACCACCG
GCCTTGACAATGAGGCGCTACTCGTAGAACCCACAGGTCATCGGGTAGAT
TAATGACAAAGATGAAGAGCGAGTGCAGCAGCTGCCGCAAATGGTTGTGT
GTTCGGGTCGGCTAGTTGAAGGGGGTGCCGAGTATTCCTTTGAAAAAGCT
TTCAGCTTTACTATATGAAAAGCTCATGTGCGCATATGCGCAGGCATGCA
TCATGACTGTCCATGCATACCTGCTGCCCTAAGAGAAGACAAAGCCAGCC
TGTGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig107:165591..170196-

>mRNA_D-herbacea_F_contig107.666.1 ID=mRNA_D-herbacea_F_contig107.666.1|Name=mRNA_D-herbacea_F_contig107.666.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=540bp|location=Sequence derived from alignment at D-herbacea_F_contig107:165591..170196- (Desmarestia herbacea DmunF female)
ATGGTGTGGGGTTCGCTTCCGTCGCGGATGATGCGATCGGGCGTGCAGGC
GGGCCTGCGCTGTGCTCGAACAAGTGCAAGATGGTGTGGGGTTCGCTTCC
GTCGCGGATGATGCGATCGGGCGTGCAGGCGGGCCTGCGCTGTGCTCGAA
CAAGTGCAAGGCTTGGCAGTAGAGCGGCGAGGCGTCGAGGAGTAGGCTCC
GCGGCAGTGAAGGCGAGCTATGCTTGGCAGTAGAGCGGCGAGGCGTCGAG
GAGTAGGCTCCGCGGCAGTGAAGGCGAGCTATGTGCCATTTCCAGCGTTC
AGCGTAGCTGAAACTGCGTTGCCTGTCTTGGCGGATCTACCGCTTTTGCA
GATTTCACACCCCTTAGGTGCCATTTCCAGCGTTCAGCGTAGCTGAAACT
GCGTTGCCTGTCTTGGCGGATCTACCGCTTTTGCAGATTTCACACCCCTT
AGCATGTCAAGAACCAGAAGGCGACGAGGATGGCGACGGCCGCTGACATG
TCAAGAACCAGAAGGCGACGAGGATGGCGACGGCCGCTGA
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