mRNA_D-herbacea_F_contig1062.647.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1062.647.1
Unique NamemRNA_D-herbacea_F_contig1062.647.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.630e-20
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SG++RHSDKHA   IP+AQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
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BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 79.7 bits (195), Expect = 5.980e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 159
            SGV+ HS +HA  +IPEAQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   67 SGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
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BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 3.440e-17
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGV+ HSDKHA  + P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
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BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 76.3 bits (186), Expect = 4.060e-17
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDI 153
            SGV  HSDKHA  N P+AQ AFKILMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
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BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 3.070e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
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BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 3.140e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
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BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 4.230e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 4.230e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: R1E1Y9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E1Y9_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 1.930e-10
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
[Close]
BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Match: R1C158_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C158_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 2.290e-10
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   18 LRQACSQEYPGSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPS 158
            L + C +  PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1062.647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA4.630e-2073.58Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT5.980e-1871.70Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS3.440e-1772.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC4.060e-1772.55Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
R1EX34_EMIHU3.070e-1168.09Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU3.140e-1168.09Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1D6I6_EMIHU4.230e-1168.09Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU4.230e-1168.09Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1E1Y9_EMIHU1.930e-1068.09Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1C158_EMIHU2.290e-1068.09Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1062contigD-herbacea_F_contig1062:1741..1902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog35128.Thaps30335
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2F8R5@1,2T9VT@2759,2XH3Y@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.7078035-CDS-D-herbacea_F_contig1062:1740..19021622927474.7078035-CDS-D-herbacea_F_contig1062:1740..1902Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1062 1741..1902 -
1690790190.8199275-CDS-D-herbacea_F_contig1062:1740..19021690790190.8199275-CDS-D-herbacea_F_contig1062:1740..1902Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1062 1741..1902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1062.647.1prot_D-herbacea_F_contig1062.647.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1062 1741..1902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1062.647.1

>prot_D-herbacea_F_contig1062.647.1 ID=prot_D-herbacea_F_contig1062.647.1|Name=mRNA_D-herbacea_F_contig1062.647.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=54bp
SGVNRHSDKHAPRNIPEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQD
IRR*
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mRNA from alignment at D-herbacea_F_contig1062:1741..1902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1062.647.1 ID=mRNA_D-herbacea_F_contig1062.647.1|Name=mRNA_D-herbacea_F_contig1062.647.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=162bp|location=Sequence derived from alignment at D-herbacea_F_contig1062:1741..1902- (Desmarestia herbacea DmunF female)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGAATATCCCGGA
AGCGCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1062:1741..1902-

>mRNA_D-herbacea_F_contig1062.647.1 ID=mRNA_D-herbacea_F_contig1062.647.1|Name=mRNA_D-herbacea_F_contig1062.647.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=324bp|location=Sequence derived from alignment at D-herbacea_F_contig1062:1741..1902- (Desmarestia herbacea DmunF female)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGAATATCCCGGA
AGCGCAAGATGCGTTCAAAATTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGAC
ATCCGTCGCTGAAGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAG
GAATATCCCGGAAGCGCAAGATGCGTTCAAAATTTTGATGATTCACTGGA
TTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGT
GGGAGCCAAGACATCCGTCGCTGA
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