mRNA_D-herbacea_F_contig106.645.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.645.1
Unique NamemRNA_D-herbacea_F_contig106.645.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: D8LB82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB82_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.360e-60
Identity = 101/126 (80.16%), Postives = 112/126 (88.89%), Query Frame = 1
Query:   19 KKAKVQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLR-GKCEKKDACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKHELPG-RKRTREAST 390
            KK K   EPCLFFC+FGKCSKS EECR+VHD++KVAVCRAFLR G C+K + CLLTHA+QAEKMPVCIYFE+GMCFTPNCPYLHVKVS+NAAVCP FLKGYCPDGTACRLKHELP  RKR R+ +T
Sbjct:  763 KKTKT-AEPCLFFCRFGKCSKSDEECRYVHDRAKVAVCRAFLRKGGCDKGNKCLLTHAVQAEKMPVCIYFEKGMCFTPNCPYLHVKVSQNAAVCPRFLKGYCPDGTACRLKHELPDPRKRARDVTT 887          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A6H5KC32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC32_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.430e-60
Identity = 102/135 (75.56%), Postives = 118/135 (87.41%), Query Frame = 1
Query:   13 AKKKAKVQT-EPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLR-GKCEKKDACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKHELPG-RKRTREASTERDQGE 408
            AK+K+  +T EPCLFFC+FGKCS+S EECR+VHD++KVAVCRAFLR G C+K D CLLTHA+QAEKMPVCIYFE+GMCFTPNCPYLHVKVS+NAAVCP FLKG+CPDGTACRLKHELP  RKR ++ S   D G+
Sbjct:  774 AKRKSNNKTGEPCLFFCRFGKCSRSDEECRYVHDRAKVAVCRAFLRKGGCDKGDKCLLTHAVQAEKMPVCIYFEKGMCFTPNCPYLHVKVSQNAAVCPRFLKGHCPDGTACRLKHELPDPRKRAKDDSAGGDHGD 908          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A485LIR1_9STRA (Aste57867_21895 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIR1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 9.290e-33
Identity = 60/119 (50.42%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    4 PRGAKKKAKVQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLRGKCEKKDACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKHELP 360
            P G  + +  +TE C+F+ K G+C K +  C FVHD  K+A+CR FLRG C     C L+H +   KMP C  F +GMC    C Y HV VSR+AA+C  F KGYCPDG  CRLKHE P
Sbjct:  193 PGGGAQASVPRTEYCMFYNKLGECKK-KNACLFVHDSRKIAICRKFLRGACHDGAKCKLSHQLDENKMPDCAMFLKGMCTRDGCHYRHVNVSRDAAICEAFHKGYCPDGATCRLKHEFP 310          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A553NNT2_TIGCA (Uncharacterized protein (Fragment) n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NNT2_TIGCA)

HSP 1 Score: 130 bits (326), Expect = 2.320e-31
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   46 CLFFCKFGKCSK-SQEECRFVHDKSKVAVCRAFLRGKCEKK-DACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKHEL 357
            C+FF KFG+C K +Q  C ++HD +KVAVCR FL+G C K  D CLLTH +  +KMP C +F+ G C   +CPY HVKVS +AA+CP F +GYCP G AC L+H +
Sbjct:  306 CMFFNKFGRCQKRAQGLCPYLHDPAKVAVCRRFLQGSCPKAADECLLTHKVSPDKMPACKFFQLGQCGRDHCPYNHVKVSADAALCPAFRQGYCPQGQACTLRHAM 411          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A8J4PM82_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PM82_9MYCE)

HSP 1 Score: 122 bits (306), Expect = 1.540e-28
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   46 CLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLRGKCEKKDACLLTHAI-QAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKH 351
            CL++ +FGKC+ S ++C+++HDKSK+  C  FL G C+  + C L H I   E+MP+C  + +GMC   NCPYLHV VS+NA +CP+F KGYCP+G+AC +KH
Sbjct:  348 CLYYNRFGKCN-SGDKCKYIHDKSKIRTCPKFLSGTCQDSE-CHLKHEITDLEQMPICYLYLKGMCTKVNCPYLHVFVSKNAKLCPDFQKGYCPNGSACTMKH 448          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A7S1I654_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I654_9EUGL)

HSP 1 Score: 118 bits (296), Expect = 4.670e-27
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   13 AKKKAKVQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLRGKCEKKDACLLTHAIQAEKMPVC-IYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKHELPGR 366
            AKKK +   E C+F+ +FG C +  + C+++HD  KVAVCR FL G+C   D C L H +   KMP C I+   G+CF   CPYLHVKVS +A VCP F KG+CP G AC+ +HE   R
Sbjct:  407 AKKKGR---EYCIFYNRFGACKRGAD-CKYIHDPQKVAVCRRFLLGECTAAD-CPLWHKLDQAKMPHCKIFITTGLCFRKQCPYLHVKVSPDAPVCPAFQKGHCPKGEACKKRHEYTRR 520          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: Q54X64_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54X64_DICDI)

HSP 1 Score: 115 bits (289), Expect = 5.180e-26
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   22 KAKVQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLRGKCEKKDACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKH 351
            K K + + CLFF +FGKC+   + CR+ H+  +V +C  F+ G C+  D C L H++  + MP+C  F   MC   NCPYLHV +S++  VCP+F+ GYCP G+ C LKH
Sbjct:  357 KKKKKKQYCLFFNRFGKCNNGND-CRYEHEPKRVRICPKFIAGNCDDPD-CKLQHSLDLDLMPICHLFLNRMCTNDNCPYLHVNLSKDTEVCPDFISGYCPKGSKCELKH 464          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A1X7VEH9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VEH9_AMPQE)

HSP 1 Score: 114 bits (284), Expect = 2.920e-25
Identity = 48/110 (43.64%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   31 VQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLRGKCEKKD-ACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNFLKGYCPDGTACRLKHEL 357
            ++++ CL++ +FG+C++  ++C+++HD  ++A+C  FLRGKCE  D +C  +H I  EKMPV       +C   NCPYLHV V  NA +C +F+KGYCP G  C+ +H L
Sbjct:  513 LRSQYCLYYNRFGRCNRG-DQCQYIHDPKRIAICSKFLRGKCENIDGSCPFSHNISKEKMPVXXXXXXXVCTRDNCPYLHVSVGPNAELCMDFIKGYCPLGEDCKKQHTL 621          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A194WT69_9HELO (Uncharacterized protein n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194WT69_9HELO)

HSP 1 Score: 111 bits (278), Expect = 3.330e-25
Identity = 55/114 (48.25%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   28 KVQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLRGKCEKKDACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNF-LKGYCPDGTAC--RLKHELP 360
            K+Q EPC  F   G C+K  + CR++HD SKVAVC+ FL+G C   D C L+H +  E+ P C++F +G C  PNC Y HV+VS +A VC  F + GYC  GT+C  R  HE P
Sbjct:  192 KIQ-EPCRAFTTTGSCNKGPK-CRYIHDPSKVAVCKKFLKGSCPSGDKCDLSHELTPERTPTCLHFAKGNCSKPNCQYPHVRVSPSALVCRAFGIYGYCEKGTSCTERHVHECP 303          
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Match: A0A2V1CF14_9HELO (Uncharacterized protein n=1 Tax=Cadophora sp. DSE1049 TaxID=1485229 RepID=A0A2V1CF14_9HELO)

HSP 1 Score: 106 bits (264), Expect = 4.340e-23
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   22 KAKVQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFL-RGKCEKKDACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCPNF-LKGYCPDGTACRLKH--ELPGRKRTREASTE 393
            KAK  T+PC  F   G CS    +C FVHD SKVAVCR FL +G C   ++C L+H +  E+ P+C++F RG C   NC Y HV+VS +A VC +F + GYC  G +C  +H  E P    T   +TE
Sbjct:  219 KAKKTTKPCKAFNITGSCS--APDCPFVHDPSKVAVCRDFLQKGSCPSGESCDLSHELTPERTPICLHFARGNCSNGNCRYTHVRVSPSALVCRSFGIYGYCEKGASCTDRHVNECPDFSNTGTCTTE 344          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB82_ECTSI1.360e-6080.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC32_9PHAE1.430e-6075.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485LIR1_9STRA9.290e-3350.42Aste57867_21895 protein n=1 Tax=Aphanomyces stella... [more]
A0A553NNT2_TIGCA2.320e-3154.72Uncharacterized protein (Fragment) n=1 Tax=Tigriop... [more]
A0A8J4PM82_9MYCE1.540e-2851.46Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A7S1I654_9EUGL4.670e-2749.58Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
Q54X64_DICDI5.180e-2644.55Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A1X7VEH9_AMPQE2.920e-2543.64Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A194WT69_9HELO3.330e-2548.25Uncharacterized protein n=1 Tax=Mollisia scopiform... [more]
A0A2V1CF14_9HELO4.340e-2345.31Uncharacterized protein n=1 Tax=Cadophora sp. DSE1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:908019..909910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue4e-53
Seed eggNOG ortholog2880.D8LB82
Preferred nameZC3H3
KEGG koko:K06093
KEGG Pathwayko04015,ko04144,ko04360,ko04390,ko04391,ko04530,ko05165,map04015,map04144,map04360,map04390,map04391,map04530,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006355,GO:0006357,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010647,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016973,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032386,GO:0032879,GO:0032880,GO:0032925,GO:0032927,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0034641,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046332,GO:0046483,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070412,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090087,GO:0090092,GO:0090100,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098787,GO:0098789,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1903506,GO:1903827,GO:2000112,GO:2000197,GO:2001141
EggNOG free text desc.zinc finger
EggNOG OGsCOG5084@1,KOG1492@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_004850.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons3
Model size714
Cds size714
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.645.1prot_D-herbacea_F_contig106.645.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 908019..909910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.5852847-CDS-D-herbacea_F_contig106:908018..9083301622927474.5852847-CDS-D-herbacea_F_contig106:908018..908330Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 908019..908330 +
1690790190.7738712-CDS-D-herbacea_F_contig106:908018..9083301690790190.7738712-CDS-D-herbacea_F_contig106:908018..908330Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 908019..908330 +
1622927474.599072-CDS-D-herbacea_F_contig106:908992..9090851622927474.599072-CDS-D-herbacea_F_contig106:908992..909085Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 908993..909085 +
1690790190.7844677-CDS-D-herbacea_F_contig106:908992..9090851690790190.7844677-CDS-D-herbacea_F_contig106:908992..909085Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 908993..909085 +
1622927474.6143072-CDS-D-herbacea_F_contig106:909601..9099101622927474.6143072-CDS-D-herbacea_F_contig106:909601..909910Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 909602..909910 +
1690790190.795258-CDS-D-herbacea_F_contig106:909601..9099101690790190.795258-CDS-D-herbacea_F_contig106:909601..909910Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 909602..909910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.645.1

>prot_D-herbacea_F_contig106.645.1 ID=prot_D-herbacea_F_contig106.645.1|Name=mRNA_D-herbacea_F_contig106.645.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=238bp
GPRGAKKKAKVQTEPCLFFCKFGKCSKSQEECRFVHDKSKVAVCRAFLRG
KCEKKDACLLTHAIQAEKMPVCIYFERGMCFTPNCPYLHVKVSRNAAVCP
NFLKGYCPDGTACRLKHELPGRKRTREASTERDQGEEGATAGKKMKPKAS
ETGLKARRREREPSSPLQSFTAVWSQPSLEHLLPLDTFVGGQARGSKQAS
LGVSQCLVHVFFFSFTLGLTLSPLSPTPFAYLFFFFP*
back to top

mRNA from alignment at D-herbacea_F_contig106:908019..909910+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.645.1 ID=mRNA_D-herbacea_F_contig106.645.1|Name=mRNA_D-herbacea_F_contig106.645.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1892bp|location=Sequence derived from alignment at D-herbacea_F_contig106:908019..909910+ (Desmarestia herbacea DmunF female)
GGGCCGCGAGGTGCCAAGAAAAAGGCGAAGGTGCAGACGGAACCGTGCCT ATTTTTCTGCAAGTTCGGCAAGTGCTCGAAGTCGCAGGAAGAGTGCAGGT TTGTGCACGACAAGAGCAAGGTGGCCGTTTGCCGCGCGTTTCTGAGAGGG AAGTGCGAGAAGAAGGACGCGTGTTTGCTGACGCACGCGATTCAGGCGGA GAAAATGCCGGTGTGCATTTACTTTGAGAGGGGCATGTGCTTCACGCCGA ACTGCCCGTACCTGCATGTGAAAGTCAGTCGGAATGCCGCCGTCTGCCCC AACTTCTTGAAGGTGTGTTTATTCTAGAGGCCATATCATAGCAAAAAAAA AGGCACAAAAAGTGTTATTTGTCGGCGACAAGAGACGGCAGAGTTAGCAT CAAGCTACTGTCTGTATGTATGCGTAGCAACGTGTAAAGTATTGGCCTAC TTTTATGAACATAAGATGTTTTTTTTTGTGTTTTGCGTGTTGCGTGTGTT AGCGTCGCTTCCCTGAACGTGATAGGCACCTGGATTGTGTTGCCAATTAG CAGGGAATTACGTATTTTGGCAACGAGTTATTAGTTATCAGTTTCTTGGT ACAAGTTTTATCATCGATTGTCCGCGCTGTGCACTTCGAAAACAAATTTG CAGAGGTCCACTGTTGCGTAGGCTCTTATTAATTTATTTTTTTTAGTCTC CGCAATTATCAGTTTTACGGTGTGCTGTGCAAGGCAACGTCGAGTGTCTG TATGTGCCACGTTTCTTGGTCTGGCGAGACCGTTGTATGTCGTGAGAAAT AAATTGTGATTTTGCTTGGACTTTTGCACCAGGCCACCCCTACAACACTT TGTTGTTTTTTCCTCGTTATTTTCCGTAAGCGTTGATAGTCTCTTTTTTT CCCATTTTTTTCTGTTTAGAGTTGTGGGTCTCGCGCGCATGCCACGCTGA CATTTATACGGATTCCGAACACAGGGTTACTGCCCGGACGGCACGGCCTG CAGACTGAAGCACGAGCTGCCTGGCCGGAAGAGAACGAGAGAAGCCAGCA CCGAACGCGACCAGGGCGTGAGCAGTCCCACGTTTTTTGTTTTGTTTTTT TAAATCCTCCGGCGGATGTTTTGGAGTGCGGCGCTTCGCTTAGATGTATG TGTATCAAGTATATGCTTAGTGTACAAGTACAGTAGTAGTAAAATAAATG TATTACTTCGTATATTATTAAAATATGGCGCGTGTTTTGGACTAGTATGA TATCACTGTTGATATTTTTCGACGTTGATGGGTATCGCCCCTTTTATGAT AACGTTTTTTGCAGTCAATTACTGAGGGAGGGAGTTCGATATGTAAAAAA GAGGCGTGTTTATCTTGGGTCAACTTGCATATGTAGAACGCCAACGTGAT AGTTGATGGTAAAAACTGGCAGGCCGTCGACGATTACAACAACATTGCTC AGTCACGCCCCCCTCGCGCGCCCGCCCACCTGCGGAACCGCTTTTTGCCG CCTTCCGCCGTGCTGTTTGCTGTGAACCGAACCAACGGGTTGCGCTTTTA TTTTTTATTTTTTTATTTTTTACCCTTGTGTAGGAGGAGGGAGCTACCGC TGGCAAGAAGATGAAACCAAAGGCCTCCGAGACAGGTTTGAAAGCGCGTC GAAGAGAGAGAGAACCCTCGAGCCCTCTGCAATCCTTTACCGCCGTGTGG AGTCAGCCCTCGCTTGAACACCTTCTTCCGTTGGATACCTTCGTCGGAGG ACAGGCGCGGGGCAGCAAGCAAGCATCCTTGGGGGTTTCTCAATGTTTGG TGCATGTGTTTTTTTTTTCCTTTACCCTCGGCCTCACCCTCTCCCCTTTA TCCCCGACGCCCTTTGCCTACCtTTTTTTTTTTTTTCCTTGA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig106:908019..909910+

>mRNA_D-herbacea_F_contig106.645.1 ID=mRNA_D-herbacea_F_contig106.645.1|Name=mRNA_D-herbacea_F_contig106.645.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1428bp|location=Sequence derived from alignment at D-herbacea_F_contig106:908019..909910+ (Desmarestia herbacea DmunF female)
GGGCCGCGAGGTGCCAAGAAAAAGGCGAAGGTGCAGACGGAACCGTGCCT
ATTTTTCTGCAAGTTCGGCAAGTGCTCGAAGTCGCAGGAAGAGTGCAGGT
TTGTGCACGACAAGAGCAAGGTGGCCGTTTGCCGCGCGTTTCTGAGAGGG
AAGTGCGAGAAGAAGGACGCGTGTTTGCTGACGCACGCGATTCAGGCGGA
GAAAATGCCGGTGTGCATTTACTTTGAGAGGGGCATGTGCTTCACGCCGA
ACTGCCCGTACCTGCATGTGAAAGTCAGTCGGAATGCCGCCGTCTGCCCC
AACTTCTTGAAGGGGCCGCGAGGTGCCAAGAAAAAGGCGAAGGTGCAGAC
GGAACCGTGCCTATTTTTCTGCAAGTTCGGCAAGTGCTCGAAGTCGCAGG
AAGAGTGCAGGTTTGTGCACGACAAGAGCAAGGTGGCCGTTTGCCGCGCG
TTTCTGAGAGGGAAGTGCGAGAAGAAGGACGCGTGTTTGCTGACGCACGC
GATTCAGGCGGAGAAAATGCCGGTGTGCATTTACTTTGAGAGGGGCATGT
GCTTCACGCCGAACTGCCCGTACCTGCATGTGAAAGTCAGTCGGAATGCC
GCCGTCTGCCCCAACTTCTTGAAGGGTTACTGCCCGGACGGCACGGCCTG
CAGACTGAAGCACGAGCTGCCTGGCCGGAAGAGAACGAGAGAAGCCAGCA
CCGAACGCGACCAGGGCGGTTACTGCCCGGACGGCACGGCCTGCAGACTG
AAGCACGAGCTGCCTGGCCGGAAGAGAACGAGAGAAGCCAGCACCGAACG
CGACCAGGGCGAGGAGGGAGCTACCGCTGGCAAGAAGATGAAACCAAAGG
CCTCCGAGACAGGTTTGAAAGCGCGTCGAAGAGAGAGAGAACCCTCGAGC
CCTCTGCAATCCTTTACCGCCGTGTGGAGTCAGCCCTCGCTTGAACACCT
TCTTCCGTTGGATACCTTCGTCGGAGGACAGGCGCGGGGCAGCAAGCAAG
CATCCTTGGGGGTTTCTCAATGTTTGGTGCATGTGTTTTTTTTTTCCTTT
ACCCTCGGCCTCACCCTCTCCCCTTTATCCCCGACGCCCTTTGCCTACCt
TTTTTTTTTTTTTCCTTGAGAGGAGGGAGCTACCGCTGGCAAGAAGATGA
AACCAAAGGCCTCCGAGACAGGTTTGAAAGCGCGTCGAAGAGAGAGAGAA
CCCTCGAGCCCTCTGCAATCCTTTACCGCCGTGTGGAGTCAGCCCTCGCT
TGAACACCTTCTTCCGTTGGATACCTTCGTCGGAGGACAGGCGCGGGGCA
GCAAGCAAGCATCCTTGGGGGTTTCTCAATGTTTGGTGCATGTGTTTTTT
TTTTCCTTTACCCTCGGCCTCACCCTCTCCCCTTTATCCCCGACGCCCTT
TGCCTACCtTTTTTTTTTTTTTCCTTGA
back to top