mRNA_D-herbacea_F_contig106.629.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig106.629.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE) HSP 1 Score: 775 bits (2000), Expect = 1.410e-256 Identity = 426/729 (58.44%), Postives = 516/729 (70.78%), Query Frame = 2
Query: 305 MAPEMWEWGGPEVETLRPRRRSNSRDEEMGEDNDGGARGLPLPPPMPLWAEHGKVESGGGIHIXXXXXXXXXXELKVMLSTFRSDKQPPCRVRVSFILDSHSPSDFGARSETYEVLKQLLRVPQAAERESFGEFGCMTHSGVLDKTQILFDFHVKGPSLPTGKRNSLVLFFNDILPIKIARGEAVEPDVVYLLDADTGHPDNGMADVECMWRLLMSEEETACLTCPVRPVNSLESFLAASQSLEYAQVWDNVGESFYAIQTTARGAQVMLKYRCIVEDGRLAQPPCGEGAMPPLLDAFSKTAAGMPAMILLDTSPSEGLLVLLRQRGFDVRSCGVADAVTCVPNSWLEFYAQRRRWYAGSIVGVLSNLTGKESYFQTQRNRWIAAAYAFLFNVYLHSSLAFLPVLLAKGLASWSLHLDSHVD-----------------DDNHDLGTRVEWIVFGLLWAFLGLNVVLYTNRSHKQLWMWINVSSLVWMLLCGVVLVGASMAVSPYVVVAVVLTPFVVGGLNSAGASLVSWASFAVSAVPYVLVFSVHSVLVFLFAMATLDSTLWGTRDVSSFDSGVTKTRKVAMRRRRLLILALVMGVSAGVGVMLMLFPVYTLLPIVVGIPAAANVLKLLVSIIPSKLERQRQSIFLGNADGLRPLSLRRGMTELAPIHGRSQDSRAEQMAS---RGGRGNRKSALTKSPTENGSFVTAEDGTPSPGSG--SASGSFF 2425
M MWEW GPE E L RG+PLP PLW EHGK + GGGIHI ELKVMLSTFR D C VR+SF+LD P+ A SET +VLK+LLRV + E FG C+ HSG LDKT I FD +VKGPSLP GKRNSLV FFNDILP+K++RGEAVEPD VYLLDAD+GHP NG+ D+E MWRLLM+EEE AC+TCPVRPV+ + SFLAASQSLE+A +WDNVGES + +QTT RGAQ M KYRC+VEDGRLA+PP GEGAMPPLL+ FSKTAAG+PA+ILLD+SPSEGLLVLLRQRGFDVRSCG AD VTCVP SW+EFYAQRRRWYAGS+V V S+LTGKESYFQ + +RWI ++YAF+ N++LHS LA +PVLLAKGL L+ +S + DD D T ++WIVF L+W F LNV Y RS QLWMWINV+S++WMLLCG LVG+ AVSP + V +V+ P V+ GLN+A ++ +W V+AVP+VL+ +V+SVLVFL+A+ATLDST WGTRDV SFDSGV+K R +MRRR+L IL M S +GV++M+ LPIV+GIP+AA +LKLL+ ++P+KLER RQ+ LG+ G RPLSLR + ELAPI+G + ++ + GG +K KSP + GS VTAEDGTPSPG S SGSFF
Sbjct: 1 MTETMWEWDGPESERLXX------XXXXXXXXXXXXXRGMPLPLMSPLWREHGKGQGGGGIHIVVCCCNETQEELKVMLSTFRIDATASCLVRISFVLDPRGPAQ--ASSETDKVLKRLLRVTDESATEVFG---CIHHSGTLDKTLIPFDLYVKGPSLPVGKRNSLVTFFNDILPVKMSRGEAVEPDAVYLLDADSGHPVNGLQDLESMWRLLMAEEEVACVTCPVRPVHPMGSFLAASQSLEFA-LWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAEPPIGEGAMPPLLNPFSKTAAGLPALILLDSSPSEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIEFYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANLFLHSGLALMPVLLAKGLHQLVLYDESRGESDDDWNDEWSEWQEESADDGIDQHTNLDWIVFALVWGFFLLNVGFYLTRSQDQLWMWINVTSVLWMLLCGGTLVGSGFAVSPLIPVMLVIIPPVLAGLNTARGTIATWRYLCVAAVPFVLLTTVNSVLVFLYALATLDSTEWGTRDVGSFDSGVSKPRAASMRRRKLCILFTTMATSCALGVVMMISSSLIFLPIVIGIPSAAYLLKLLLVVVPAKLERSRQTYLLGDV-GSRPLSLRGSVAELAPINGCPPEFSTDRHSGGDRNGGGIGQKGLGPKSPAKTGSHVTAEDGTPSPGGMDVSTSGSFF 716
BLAST of mRNA_D-herbacea_F_contig106.629.1 vs. uniprot
Match: D8LBH7_ECTSI (Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH7_ECTSI) HSP 1 Score: 587 bits (1514), Expect = 5.530e-201 Identity = 300/475 (63.16%), Postives = 354/475 (74.53%), Query Frame = 2
Query: 305 MAPEMWEWGGPEVETLRPRRRSNSRDEEMGEDNDGGARGLPLPPPMPLWAEHGKVESGGGIHIXXXXXXXXXXELKVMLSTFRSDKQPPCRVRVSFILDSHSPSDFGARSETYEVLKQLLRVPQAAERESFGEFGCMTHSGVLDKTQILFDFHVKGPSLPTGKRNSLVLFFNDILPIKIARGEAVEPDVVYLLDADTGHPDNGMADVECMWRLLMSEEETACLTCPVRPVNSLESFLAASQSLEYAQVWDNVGESFYAIQTTARGAQVMLKYRCIVEDGRLAQPPCGEGAMPPLLDAFSKTAAGMPAMILLDTSPSEGLLVLLRQRGFDVRSCGVADAVTCVPNSWLEFYAQRRRWYAGSIVGVLSNLTGKESYFQTQRNRWIAAAYAFLFNVYLHSSLAFLPVLLAKGLA------------------SWSLHLDSHVDDDNHDLGTRVEWIVFGLLWAFLGLNVVLYTNRSHK 1675
MA MWEW GPE E LRPR R+NS +++D G RG+PLPP PLW EHGK + GGGIHI ELKVMLSTFR+D C VR+SF+L+ ++ A SET EVLK+LLRV + E G C+ HSG LDKT I FD +VKGPSLP GKRNSLV FFNDILP+K++RGEAVEPDVVYLLDAD+GHP NG+ D+E MWRLLM+EEE AC+TCPVRPV+ +ESFLAASQSLE+A +WDNVGES + +QTT RGAQ M KYRC+VEDGRLAQPP GEGAMPPLL++FSKTAAG+PA+ILLD+SP+EGLLVLLRQRGFDVRSCG AD VTCVP SW+E YAQRRRWYAGS+V V S+LTGKESYFQ + +RWI ++YAF+ NV+LHS LA +PVLLAKG+ WS + DDD D T ++WIVF L+W FL LNV +Y RS +
Sbjct: 1 MAETMWEWDGPESERLRPRARNNS------DEDDDGERGMPLPPMSPLWREHGKGQGGGGIHIVVCCCNETQEELKVMLSTFRTDATASCPVRISFVLEPRGAAE--ASSETDEVLKRLLRVTDESATEVSG---CIHHSGTLDKTLIPFDLYVKGPSLPVGKRNSLVTFFNDILPVKMSRGEAVEPDVVYLLDADSGHPVNGLEDLESMWRLLMAEEEVACVTCPVRPVHPMESFLAASQSLEFA-LWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLNSFSKTAAGLPALILLDSSPNEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIELYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANVFLHSGLALMPVLLAKGIHRLVLYDESRGESDDEWNNEWSAWQEESADDDI-DRHTNLDWIVFALVWGFLLLNVGVYLTRSQE 462
BLAST of mRNA_D-herbacea_F_contig106.629.1 vs. uniprot
Match: F0XZN2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZN2_AURAN) HSP 1 Score: 92.4 bits (228), Expect = 2.660e-15 Identity = 82/317 (25.87%), Postives = 142/317 (44.79%), Query Frame = 2
Query: 524 ELKVMLSTFR-----SDKQPPCRVRVSFILDSHSPSDFGARSETYEVLKQLLRVPQAAERESFGEFGCMTHSGVLDKTQILFDFH--------------------VKGPSLPTGKRNSLVLFFNDILPIKIARGEAVEPDVVYLLDADTGHPDNGMADVECMWRLLMSEEETACLTCPVRPVN-SLESFLAASQSLEYAQVWDNVGE-SFYAIQTTARGAQVMLKYRCIVEDGRLAQPPCGEGAMPPLLDAFSKTAAGMPAMILLDTSPSEGLLVLLRQRGFDVRSCGVADAVTCVPNSWLEFYAQRRRWYAGSIVG 1393
E++ M++T+R + PP + +SF++D + + S + L + L + AA ++ FGC + G + + DF VK +LP GKR S R P ++ D DTG D G+ADVE ++ LL+ +++T + RP S +L +Q LEY +++ +G S++ A G VM ++ + DG + EG +L+ + T+ + +++LD G+ + + Q G + TCVP +W +++ QRRRWY G +VG
Sbjct: 1897 EIETMMATWRIAGPRPETLPP--LHLSFVVDGSTDPE--NPSHSLLALCRCLGIDAAAPADA-DLFGCRRYEGEMRASAGASDFSGDREETKEEGALKTYPFEVWVKNGALPRGKRISFARASR-------RRSCTTPPTAIHFQDGDTGS-DRGLADVEKLFLLLLEDDDTGVVCSKTRPAQYSPWVWLLRTQQLEYLEMFGGLGGFSWFRSVGCAVGMSVMYRWTAL-RDGVVH-----EGMT--VLEKYVSTSRSIVDLVMLDMVEDYGMTMYILQSGAGSVMSHLTHFRTCVPETWCDYFGQRRRWYTGGLVG 2192 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig106.629.1 >prot_D-herbacea_F_contig106.629.1 ID=prot_D-herbacea_F_contig106.629.1|Name=mRNA_D-herbacea_F_contig106.629.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=725bp MAMAPEMWEWGGPEVETLRPRRRSNSRDEEMGEDNDGGARGLPLPPPMPLback to top mRNA from alignment at D-herbacea_F_contig106:607629..628312+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig106.629.1 ID=mRNA_D-herbacea_F_contig106.629.1|Name=mRNA_D-herbacea_F_contig106.629.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=20684bp|location=Sequence derived from alignment at D-herbacea_F_contig106:607629..628312+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig106:607629..628312+ >mRNA_D-herbacea_F_contig106.629.1 ID=mRNA_D-herbacea_F_contig106.629.1|Name=mRNA_D-herbacea_F_contig106.629.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4350bp|location=Sequence derived from alignment at D-herbacea_F_contig106:607629..628312+ (Desmarestia herbacea DmunF female)back to top |