mRNA_D-herbacea_F_contig106.618.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.618.1
Unique NamemRNA_D-herbacea_F_contig106.618.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig106.618.1 vs. uniprot
Match: D8LBJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ4_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.710e-41
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 2 
Query:   80 MGVTAMLVGGTMGVVAKASMNNLMKVGMRRAPWEYVLGAGIGAYIGNKIPQWEDQLMLDINGMRADRNMPPAERVGGFAFGASMTES 340
            MG+TAM VGG  G+VAK ++N LMKV +RRAPWEYVLGAGIGAY+GNKIPQWE  L+ DIN MRADRNMPPA RVGG+ FG+S+T+S
Sbjct:    1 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDS 87
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BLAST of mRNA_D-herbacea_F_contig106.618.1 vs. uniprot
Match: A0A6H5JVS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.260e-23
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 2 
Query:  170 APWEYVLGAGIGAYIGNKIPQWEDQLMLDINGMRADRNMPPAERVGGFAFGASMTES 340
            APWEYVLGAG+GAYIGNKIPQWE  L+ DIN MRADRNMPPA RVGG+ FG+S+T+S
Sbjct:  590 APWEYVLGAGVGAYIGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDS 646
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BLAST of mRNA_D-herbacea_F_contig106.618.1 vs. uniprot
Match: A0A7S2V622_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V622_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.050e-16
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  116 GVVAKASMNNLMKVGMRRAPWEYVLGAGIGAYIGNKIPQWEDQLMLDINGMRADRNMPPAERVGGFAFGAS----MTESTSKDE 355
            GV  KA  N++MKV +RR PWEY++   +GAY+G K+P+W+  L+ +IN M  +R +PP +  G F+ G+     MT S S D+
Sbjct:   18 GVALKAMTNSVMKVPLRREPWEYLMFGALGAYVGYKMPEWQQNLIDNINEMHEERGLPPLDVDGQFSLGSKFKQLMTYSASTDD 101
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BLAST of mRNA_D-herbacea_F_contig106.618.1 vs. uniprot
Match: A0A1E7EW66_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EW66_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.050e-7
Identity = 26/71 (36.62%), Postives = 42/71 (59.15%), Query Frame = 2 
Query:   80 MGVTAMLVGGTMGVVAKASMNNLMKVGMRRAPWEYVLGAGIGAYIGNKIPQWEDQLMLDINGMRADRNMPP 292
            MG+T ++VGG++G  A+   N + K+   R PW +VL    GAY   K    ++ L+ D+N +RA + +PP
Sbjct:    1 MGLTTVVVGGSLGFAAQCISNAIQKIPTSRQPWMHVLCTVGGAYGATKWVSAKEDLLADVNEIRAYKGLPP 71
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BLAST of mRNA_D-herbacea_F_contig106.618.1 vs. uniprot
Match: A0A5J4XJJ5_9CHLO (Excitatory amino acid transporter 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XJJ5_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 2.650e-6
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 2 
Query:   86 VTAMLVGGTMGVVAKASMNNLMKVGMRRAPWEYVLGAGIGAYIGNKIPQWEDQLMLDINGM---RADRNMPPAERVGGF 313
            V+    G  +G+      N L KV + R PWE+++  G GA++GNKI ++E++   ++ GM   RA+RN    +++ GF
Sbjct:    2 VSGAFFGACIGLSINLYSNALRKVPLMRQPWEHLIAIGGGAWVGNKIVEYENRTAKELEGMLAKRAERN----QKLEGF 76
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LBJ4_ECTSI1.710e-4173.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVS4_9PHAE9.260e-2378.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V622_9STRA2.050e-1642.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7EW66_9STRA2.050e-736.62Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A5J4XJJ5_9CHLO2.650e-634.18Excitatory amino acid transporter 1 n=1 Tax=Trebou... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:300114..302574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003750.1
Exons2
Model size367
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.618.1prot_D-herbacea_F_contig106.618.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 300193..302565 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.5073297-UTR-D-herbacea_F_contig106:300113..3001921622927471.5073297-UTR-D-herbacea_F_contig106:300113..300192Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 300114..300192 +
1690790188.8276193-UTR-D-herbacea_F_contig106:300113..3001921690790188.8276193-UTR-D-herbacea_F_contig106:300113..300192Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 300114..300192 +
1622927471.540312-UTR-D-herbacea_F_contig106:302565..3025741622927471.540312-UTR-D-herbacea_F_contig106:302565..302574Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 302566..302574 +
1690790188.8607736-UTR-D-herbacea_F_contig106:302565..3025741690790188.8607736-UTR-D-herbacea_F_contig106:302565..302574Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 302566..302574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927471.5216286-CDS-D-herbacea_F_contig106:300192..3002831622927471.5216286-CDS-D-herbacea_F_contig106:300192..300283Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 300193..300283 +
1690790188.8390465-CDS-D-herbacea_F_contig106:300192..3002831690790188.8390465-CDS-D-herbacea_F_contig106:300192..300283Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 300193..300283 +
1622927471.531127-CDS-D-herbacea_F_contig106:302377..3025651622927471.531127-CDS-D-herbacea_F_contig106:302377..302565Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 302378..302565 +
1690790188.850491-CDS-D-herbacea_F_contig106:302377..3025651690790188.850491-CDS-D-herbacea_F_contig106:302377..302565Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 302378..302565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.618.1

>prot_D-herbacea_F_contig106.618.1 ID=prot_D-herbacea_F_contig106.618.1|Name=mRNA_D-herbacea_F_contig106.618.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=93bp
MGVTAMLVGGTMGVVAKASMNNLMKVGMRRAPWEYVLGAGIGAYIGNKIP
QWEDQLMLDINGMRADRNMPPAERVGGFAFGASMTESTSKDE*
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mRNA from alignment at D-herbacea_F_contig106:300114..302574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.618.1 ID=mRNA_D-herbacea_F_contig106.618.1|Name=mRNA_D-herbacea_F_contig106.618.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2461bp|location=Sequence derived from alignment at D-herbacea_F_contig106:300114..302574+ (Desmarestia herbacea DmunF female)
GTGTTGTACAAAATTTGAGTATTGCTGAAGAAGGGAGAAGACCTGGGTGA
CGCGAAGCGACGTGCCACAACAAAAAAAAATGGGAGTGACGGCGATGCTT
GTTGGGGGCACTATGGGGGTCGTCGCGAAGGCCTCGATGAACAACCTCAT
GAAGGTTGGCATGCGAAGAGGTGAGAATACGACATGTACTACTACTGTTG
TAAGTATTCCTTAGCCGTAACTACATCCCAAGTGTGTTGCTCGTGTTTGT
GTGTATAGCCAAGACAGACGGATTGTTGCACACACTCCGAAATAACGTAC
CCAAGCTTGCAAGCGGCAAGGCCTGGCACTGTTGTGGTGCTGAGAGAACA
ACGTGGTCTTGCGAGAACAGCAGAATGGGGTTGGGGTGTGGCTTCAAAAT
CCACCAAGAGTGTTGCCTGCTGCTGTGCGATTTGCTTTTTGACGCGTGTT
AACACTGCAAGTGACTCAGTAACACGTAGGAGTTTCACAGCATTGTATTG
CCTACACCACACGGCTTTACCTTGCAGCGAGAATCGCAGCCGGTTATGCT
CTAGTGCGACAATACGTCTGTGATGTCTCGCCTGGGTTGTGGGTTGCGTC
CGGTCGGTTTTCATTCTATCATGAAATCATCACGAGTAACACAAGTAACG
AGAGTAGCCATCCTTCACAATCGTCGCATGCGAGTATTATGTCGCTTACA
TAGAAGGTACTGCCTTCGGCGGCGATAAATGGGAGTTATTTTGATTCAGT
ACTTTGATGACAGACGCTGACCATGGTATGTGTTTTTTGTCATATTTTAT
GTACAAATCAATGAGCTGTGACGTTCCAAACTGGTTCGGGGGCCAGCGGA
TAATGATCAACTCCACTACGACTCGTATCATACGAGTACGAGTACTGCAC
TGCTACTACTGTGTGATAACTCGGTCGCACGGGTTCTATCGGTCCTCAGA
TGAGGTATATGTGGCGGGTTACATATCGTAGAACACGGGAACTTTCAGCA
CGAGTAGGCAAGGTGAATAAGTTTATTTCCTGCTTGTCAGTAAACTGTTA
CATACGTTTGCAGAGAGGAGCTTCCCACAGGAAACGAGCACACGACTTCC
CTCCCATCGTGTACTCGATATTTTTTACGAATGCGCAACAACAGTTCTTA
TTATACAAGCTCGAATGTGTCGGTGTAGGAGCAAATAATTGCCTACCTGG
TAGGCTCTATCATAACTCGCAACGGTACGACATATCGTTGATTCGATAAG
CTCTAATCTCACAATCGAATTTCAATACGGACGGGTGCTGTTGTAAAAAC
ATGATTCGATACGGTACGAGTATCACGGTTAAGAAGTACGGTAACAAGGA
GTTTCAGCAGGTCTTTATAGCTCGTAGGCATGTCCTCAGCAGCCAACCTT
CAAAATACCGATTGGGCCATTCCTCGCGTTGTGGGTCGAAAGGACAGGCC
AATGCATAGATGCACCGATACCATATACCACCACCGCGCATTGTATCATA
CGCGGAGAGAGAGTTAGAGAGAGCATGCCCGTGTTCCGACGTGCTGCTTT
TTTATTTTGTCAGCGGTCACCGCCTCGCGTGTAACACCTAAAATGATTGC
CGGTGGTGTGTTCAGTCTCAAGCGAAACACAAGTACAGAGTAATGCGGAG
TTTTTTTTGACGGATTGAGTTTTTGTGGAAGCTTGGAGTGCCCGATGTTG
TGTTTAATAAGGGTCGGCCTCGATGGCGGATGATTTGATAGTACCGTGGG
ACTCGCGACATTCCGCAATATCCCGCAAGGAGGGTCTTCGCCCTCGTCCA
AAACATGGGAAGAAGAATCTTATCAACCAGCGGCTAACAGCAGGTGTTGA
GCGATTTATGAGCTCATCTCTGTGGTCGCCGAGCCGTTTAATTCACCCAT
CGCCCGAGAATTGATGTCTCCTGTAAATTATGAAACCAAAAACTCGTTCG
CAACACAAAAAACAACTTGAAGCCACGGACGTATTCCTTCCCGGGAAAGC
ACTATCCGTTTTGTCTGCATCGCTGAAAAAATATCCGCTAGGCTTCTCTT
GCGGTTTGTGCTCTCCACCAAGAAATTTCTTGCTGGTTCCGAGCTGCTTG
CGGTTGCCCCCCGGGTACCCGTGACGATCGTGCATCGGTGAAGTAACTGG
AACATTTAACACCTTATAGTGGCATCATAGTCTTATCGTGTCCGGCCTCC
CCCTTTTTTTTTCTTGCCGTTTTGCTCCTTCCTTGCCTGTCCCATTACGT
GCTACTCCGCGCAGCACCATGGGAGTACGTTCTCGGTGCAGGAATAGGGG
CTTACATCGGAAACAAGATTCCTCAGTGGGAGGACCAACTTATGCTAGAC
ATAAACGGGATGAGGGCAGACCGCAACATGCCCCCCGCCGAACGTGTTGG
CGGCTTCGCCTTCGGAGCAAGCATGACCGAATCCACTTCGAAGGATGAAT
GATTTTGATTT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:300114..302574+

>mRNA_D-herbacea_F_contig106.618.1 ID=mRNA_D-herbacea_F_contig106.618.1|Name=mRNA_D-herbacea_F_contig106.618.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=558bp|location=Sequence derived from alignment at D-herbacea_F_contig106:300114..302574+ (Desmarestia herbacea DmunF female)
ATGGGAGTGACGGCGATGCTTGTTGGGGGCACTATGGGGGTCGTCGCGAA
GGCCTCGATGAACAACCTCATGAAGGTTGGCATGCGAAGAGATGGGAGTG
ACGGCGATGCTTGTTGGGGGCACTATGGGGGTCGTCGCGAAGGCCTCGAT
GAACAACCTCATGAAGGTTGGCATGCGAAGAGCACCATGGGAGTACGTTC
TCGGTGCAGGAATAGGGGCTTACATCGGAAACAAGATTCCTCAGTGGGAG
GACCAACTTATGCTAGACATAAACGGGATGAGGGCAGACCGCAACATGCC
CCCCGCCGAACGTGTTGGCGGCTTCGCCTTCGGAGCAAGCATGACCGAAT
CCACTTCGAAGGATGAATGACACCATGGGAGTACGTTCTCGGTGCAGGAA
TAGGGGCTTACATCGGAAACAAGATTCCTCAGTGGGAGGACCAACTTATG
CTAGACATAAACGGGATGAGGGCAGACCGCAACATGCCCCCCGCCGAACG
TGTTGGCGGCTTCGCCTTCGGAGCAAGCATGACCGAATCCACTTCGAAGG
ATGAATGA
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