mRNA_D-herbacea_F_contig105.562.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.562.1
Unique NamemRNA_D-herbacea_F_contig105.562.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig105.562.1 vs. uniprot
Match: A0A6H5L805_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L805_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 3.330e-51
Identity = 86/112 (76.79%), Postives = 101/112 (90.18%), Query Frame = 3 
Query:  210 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPDVATNISFIAVSAFGACVLVFHICQEYHVLGYRAILQTPKHVINGIVVHLAVRALRWHIDRMLGRNFLSGDGAMPNFFVSS 545
            MALVDTQGFVMAVDRSLFGPQGRRWIERKLP+VATN++F+AVSAFGAC+LVFHI +EY+  GY AILQTPKH++N +V+HL  RALRWHIDRMLG NF +GD A+P+FF S+
Sbjct:    1 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPNVATNLAFVAVSAFGACLLVFHITREYYTSGYWAILQTPKHILNAVVLHLVARALRWHIDRMLGVNFAAGDEALPDFFGST 112
[Close]
BLAST of mRNA_D-herbacea_F_contig105.562.1 vs. uniprot
Match: A0A835ZHV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.610e-26
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  210 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPDVATNISFIAVSAFGACVLVFHICQEYHVLGYRAILQT-PKHVINGIVVHLAVRALRWHIDRMLGRNFLSGD 515
            MALVD     +AVDRSLFGPQGRRWIERKLP+V +N++FI VS FGAC+L+F IC +Y   G+   L   PKH+    +VHL  + LRWHI +++  +F+  D
Sbjct:    1 MALVDINPLTVAVDRSLFGPQGRRWIERKLPEVTSNMTFIMVSGFGACLLMFGICTDYQRFGFVGGLGCLPKHIAAATLVHLLAKLLRWHITQVVQGSFMPDD 103
[Close]
BLAST of mRNA_D-herbacea_F_contig105.562.1 vs. uniprot
Match: D8LSC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC9_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.300e-15
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  369 ICQEYHVLGYRAILQTPKHVINGIVVHLAVRALRWHIDRMLGRNFLSGDGAMPNFFV 539
            I +EY+  GY AILQTPKH++N +V+HL  RALRWHIDRMLG NF +GD  M ++ V
Sbjct:    9 ITREYYKSGYWAILQTPKHILNAVVLHLVARALRWHIDRMLGVNFAAGDEGMNSWRV 65
[Close]
BLAST of mRNA_D-herbacea_F_contig105.562.1 vs. uniprot
Match: A0A835YVS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.030e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:  288 ERKLPDVATNISFIAVSAFGACVLVFHICQEYHVLGY-RAILQTPKHVINGIVVHLAVRALRWHIDRMLGRNFLSGDGAMPNFFV 539
            E KLP V +NI+FI VS FGAC+L+F +C +Y   G  R     PKH+ N  V+HL  R LRWHI R + R F   D   PN F 
Sbjct:   61 EHKLPYVVSNITFILVSGFGACLLMFTVCADYQRGGLLRGAAALPKHLANAAVLHLVARLLRWHIGRTVYRAFAPADD-RPNVFT 144
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L805_9PHAE3.330e-5176.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZHV2_9STRA5.610e-2653.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSC9_ECTSI5.300e-1561.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVS8_9STRA5.030e-1348.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:812818..819627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size741
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.562.1prot_D-herbacea_F_contig105.562.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 812818..819418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.8597808-CDS-D-herbacea_F_contig105:812817..8129251622927465.8597808-CDS-D-herbacea_F_contig105:812817..812925Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 812818..812925 -
1690790185.9279933-CDS-D-herbacea_F_contig105:812817..8129251690790185.9279933-CDS-D-herbacea_F_contig105:812817..812925Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 812818..812925 -
1622927465.8738418-CDS-D-herbacea_F_contig105:813894..8140081622927465.8738418-CDS-D-herbacea_F_contig105:813894..814008Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 813895..814008 -
1690790185.93653-CDS-D-herbacea_F_contig105:813894..8140081690790185.93653-CDS-D-herbacea_F_contig105:813894..814008Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 813895..814008 -
1622927465.8891726-CDS-D-herbacea_F_contig105:814351..8145011622927465.8891726-CDS-D-herbacea_F_contig105:814351..814501Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 814352..814501 -
1690790185.9440444-CDS-D-herbacea_F_contig105:814351..8145011690790185.9440444-CDS-D-herbacea_F_contig105:814351..814501Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 814352..814501 -
1622927465.9020169-CDS-D-herbacea_F_contig105:819259..8194181622927465.9020169-CDS-D-herbacea_F_contig105:819259..819418Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 819260..819418 -
1690790185.952722-CDS-D-herbacea_F_contig105:819259..8194181690790185.952722-CDS-D-herbacea_F_contig105:819259..819418Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 819260..819418 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.9156399-UTR-D-herbacea_F_contig105:819418..8196271622927465.9156399-UTR-D-herbacea_F_contig105:819418..819627Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 819419..819627 -
1690790185.962159-UTR-D-herbacea_F_contig105:819418..8196271690790185.962159-UTR-D-herbacea_F_contig105:819418..819627Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 819419..819627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.562.1

>prot_D-herbacea_F_contig105.562.1 ID=prot_D-herbacea_F_contig105.562.1|Name=mRNA_D-herbacea_F_contig105.562.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=177bp
MALVDTQGFVMAVDRSLFGPQGRRWIERKLPDVATNISFIAVSAFGACVL
VFHICQEYHVLGYRAILQTPKHVINGIVVHLAVRALRWHIDRMLGRNFLS
GDGAMPNFFVSSPKNQDDGPDGDKPPVLWPWKSGHAAAQSKNHSDVESTT
SDHDQRHGWWDSGGGGGGAGSRKENRA
back to top

mRNA from alignment at D-herbacea_F_contig105:812818..819627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.562.1 ID=mRNA_D-herbacea_F_contig105.562.1|Name=mRNA_D-herbacea_F_contig105.562.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=6810bp|location=Sequence derived from alignment at D-herbacea_F_contig105:812818..819627- (Desmarestia herbacea DmunF female)
CTCACTACTGTTGTACGTAGTGCAGTAGTATTACAGTAGTGTCTCATCGA
GGCAATAGCGATCTTACCTTTGAATGGAAGCCACCTTTCATTGATCTGTA
TACTTGGCGCTTTCACGTGTTTTGTGTGACCGCTACACTGACAAGCAGCT
CCTACGTACCTTCAGCTGGGAAGAAGTGTTGCACCAAGCAAGCGCGCAGA
AGAAAAAACATGGCGCTTGTAGATACTCAAGGCTTCGTCATGGCTGTGGA
CAGGTCTCTCTTTGGACCCCAGGGGAGACGATGGATCGAGCGCAAGCTGC
CCGACGTTGCCACTAACATCTCCTTCATCGCCGTCTCTGCCTTCGGGGCA
TGCGTGCTCGTGTTTCACGTGAGTATTCTCTGTTTGATACTACTCCAATT
TTCGTCGGATGGATGCGGATACAGAACAACAGTCAGTGGTAGTACCAAGA
GTATTGATATCTGTTGGTTGTTTTTCAAAATACTGGTGTCATGTGGGCAG
TGCGCTTTTATAGGCAGACACGCTCTTCAATAACCCTGTACGGGTATACT
CGGGAAACTGCACGGTACGAGTAGTAATCACAGCTCCCCAGGAAGCCCAC
GTTTTGAAAGTGTTTTGGTCATGACCTTTCCTCGAAACGCGGGTTGATCT
TTGATTTACAATTAACCAAACAAAGCACAACAGCACAATCAATTGGCAAC
TGCCTGTTGTGGTGCACTTTCATGGTACAGTAGTAGTACTACTATTAATA
CTACTGTTGTACTCGTATGATACTTGTATCACTGTCACAGATCATACCAT
ATGATACGACGCTGAGCAGAGACAACAGACAGTAGTATTTTTTTTTTTTT
CTTACAAAGACATCAGCCGTGACGTACCAAACTGGTTCGGGGGCCAGGGG
ACAATCGTCAACCTCACTGTGTGATACATCGGTCTCGCGGATTTTATCGG
TCCTCAGATAATAACATATGATAGTACGAGGTAGTACTCGTAGACTCGCA
GCTACGCCAAAATCTACGATACAGGTTGACATGACAGGGAGTCCTGCTAC
AATACTCGTAGCAACCTGCGGTACGCGCTTGTGGAGATCCTGTAGCACTT
GTAGTATGCGACAGTGTTGTGTATCACACAACAGTAGTAGTATTAATATT
AATAGTAGTGAGGTTGACAATTATCTCCTGGCCCCCGAACCAGTTTGGAA
CGTCACGGCTGATGTCTTCGTAAGCGTTAAAATAATTATAGTACACGGGT
CCACTTCGCGGGGCGGCTGTCGCCGCCTATGATAGCTGTGCTCTGCGAGA
AGACGAGTTTGTATACGCGGAAAGTGACGTATTATAGGGGGGGGCTTGAG
GCGTGAAACCCATTGCCAAGGAGAAGGATCTGGAGTAGGTAGTAGGTAGA
CCGTTGTTGATGTTTTTTGTCATCATTTTGGCAAATTGTAGTGACTAGAA
CCCTAAAGCCTATACTCGTATCATACAACGGTACAGTAGTAGAGGTGCCA
CCCGTTCGATTCGGACCCGGTTACCCGGCGGGTTTACCCTCACCCGACGG
GTCCGGGTCCGACCTAATACCCGCCGGGTATTCGGGGCCGAGTACCCGGG
TACCGGGGTACCCGCTTCGCCAAGGTGTCCCCGTGTTTAGCACGCCTGAT
AATACCTCCAGAAACCAGAAACCCTTAGTAAAACCAAGGCAGCATCGTGC
GTTAGTAGGCATTACCTGGCACAGTTTGACGCTTGTAGTTATCTCAGCGA
TACAGTATATAATCACATTTTAGGCACCGGGTCCACCGCGTACCCGGGTA
CCCGATACAGTACATACTTCGAAGTATAATCACAATTTAGGGACCGGGTC
TACCGGGTACCCGGGTACCCGAACAGCAATCCGAACAACATATGAGCCCG
TTTACGGTCGTCAAGTGGGCCTGACAAGTGACGGATTGGGCGCACCACAA
TACAGTGCAGTGTAGTGCGCCGTACCCACCACGTGTCAGGCCCACTTGAG
CGTAAACGGGCTCATGTAGTTCGGGTACCCGGGTACGCGGTGGACCCGGT
TCCTAACCCTTGAAAAAACCGGGTTACCCGGGGGCGAGTCCGAGTCCGAC
CTCTGAAAATTGGCGGGTACCCGTTAGTGGCGGGTACCCGGCGGGTGGCA
CCTCTACGGTACAGTAGTCAGTGAGTCATGGAATTTGGCAAACAATTTGA
CAGGGAGTACAAGATACTACTACTGTAGAGCCTAGGATACGTAGAACCCT
ACAAAGCCTGCTGTTTGTTGTGCGAAAGGGGGGTTGACCATTGACCATTG
ACCATTAACCTTGACCTTCATCTGAGTCCGGAAGGCCCATCTATCTGATT
CTGATGAGCGACCACCGCCGCAAAAGGCCGCTTATTGACTAATATTATTC
TTATCAATAGGTCTACTCGTAGTACTTAATACGTACTATAATAGAGCTTA
CATATGGCGAACACAGCGCAAAGGCTACTCACTATCCTACCAGTATGATA
CGGACAGTAGAGTAGTACTGTCATAAACTTGGTATATTGCAGTACTTTGA
TATCATTACGTACGTACTTCCGGAATTTTATCGATAACGAAGGATTTTCC
ATTTTCCGACTGGTTTGACATCATTTGTTTGAGGTTTGAGGGGTGGTTGC
GCTCTTTCAGGCTCCGACTGGACTGGTAAAAATCGAACCTATCATAGGCT
GAACCGGGTACTCATTTGTTGCTTGCCGTTAGTCCTTTGACCATTGACCA
CGCATCCCTTGCGAGACGGAGCACATTTTCCTACTCCTAATAGAGAAACC
TCCAACATTTGGGCGTTCTTAACGTTTTTGCCATATCTCACACAGAAGCC
TTTGTTGCGGGGGGGGGGGGGGGGGTACTCACTTCATGCATGGCCGCAGT
CGTAGGACCATAGACCCTTTGCATCCCTACGTACAATACCGGGACGGAGC
ACGTCGGGTTTTCTTTGTGTGTGTGTGTGCGCGTAATGTGATTACATCAT
GATGTGTCGCGCGTCGCTACTTTAGCTGCTGTCCTACCAAAAATGTGCAA
TCTTTAGAGCTGTGTATTGGTATAATACCAATTTCGTTATTTGTGTTGGC
CAATACTACATTACATAGATATTGGTTCCGGAGCCATTATATGATACCCT
GCCTGGTATATATTTTCGGGAGTATTTTAATGAGCCGGAAGGCCTTTTTA
CTGAAGAGATAGGGGAACCAATGTCCACAAACTACATTACACGGAGCATC
CACACGCAACGCAGTGTAAGGACGCGTGGCACACACAGCAAAGCCACACG
AGCTCTGAATTCTCGGTATCCCAGCCGGCATCTCTCCACACAGCGACCAC
AGCGATAACGAAGGGTCGCAGGGCGAGAGGAAAAAAGACATACACACACA
CACACAGCTTGCCGGCGAGGCCAAAACATCGATATCCCACCAGCCATTAG
GCCTAGCATTGTTGTAGGACAGAACTTTACAGGAACTTTACAGGACCTTC
TACAGAGGTTTTGACTCTCTAATAGTATGACGTGTGTTCGTTAGGGGTAG
TGTTAGAATTTTCCGAAACTGCTGAACAAGCAGCCCACGTTCGTACGAAT
CACATAATAAAACGAAAGAAAAAGAAAGATCCGTCCTATCATACGATGTT
GCTAAATAAGGCGGCTGGCTCCCACCAGCACCCTGAAAACGGTGAAACAT
TCGATGTTATAGGGAGGGTGGGTACTGCTGACACACCTAATGATGGATGT
CAAAAGTCCGACGGGGCGAACCACCCCGCGTGGCAGTTCTCCAAAGTGTA
TGGTATGTATGTCCCGGGGTCTCTGGGCAGCCGGCCCCCCACCCTCCCAA
AGTTTTGCCAACCCATCCCGCAGTTCTTCAAGGTGTATGGTATGTATGTT
GCGGGGTCTCTGGGCAGCCGGCCTCCCATCCTCCCAAAGATTTGCCAACC
CATCCCGTCGATGATGGGGGGTACAGATTACAAAGTGTTAGACGGGATAT
TTCGGGAGGTTTTTACTCCCTGTTATTATAGGGTGTAGGTTGGGTTATGG
TTGCGGTTAGTTGTAGGAAAATTCCTACCTGTCTGCCTGCCTGCGAGAGT
GTCCCACGTTCGGAGGGTTTTTTGTACCGATTCTTCGACCAAAATGGTTG
ATATACACTACTGTGTATCATGCTGCGTAATAAACAAAGCGGGCTAACTC
TAACGCTATAACGATTTACTTTTCATTCGAGGATCTTAGTTGGAAATTTG
ATTGGGTGTACCAAACAACAGATACGCACTCCGACGCCTTGAAGATGTGG
AAATGCCATTCCAACCCCGGGCCATGTCATAGTTCGTACCCTAACCTACG
CCCCATACGCGGTCGTAGTCGATGATGGCGAGAACCTGATGTTTGGTTGT
TGGATGGGCACCCTGACTCTTAACCCAATCAAAAACATAGATATTTTGCT
TTTTGGACCAATGAAAAGTCGGTATTTGGTTGACGAAGAGAATTGGTAAA
ACACTACTCCACGTTCGTACCATTCAGTAAAATAAACGACACTACTGTAG
CCGAAATATCTATTACAGAGGCCCATAACAAATAGGCCCAAAACAGGGCG
AATAAGGGGGAGCAACCCCCCCCCCCCCCCCTCCGAAGAATGCAAATGTA
GCACCGTTGATAAGTCTACTACTGCCACCGCATGATACAAACGAACGAGA
TCCGCGATTCACGCCGCGTCTGTCTCACGATACACACGTCGATATAAGTG
TTTTGGGCCTATATATTAGGGCCCCTTGTGAATAGTAGGTTTTTAGCGTT
GTTGTAGGACGGAACTTTACAGGAACTTTGCAAGAACGTTACAGGAACTT
TTCCAAAAACTTTACAGGAACTTTACATAGGTTTTGACTCTCTATTAATA
TCTATTACGTGGTATGACGCGTGTTCGTTAGGGTTAGGGTTATCGGGTTT
GTGCAATAAATTTCCGAAACTTGTGAGCAAACAGCCCACGTTTCTATAAT
ATTACTCATATACATCCTAAAAATACTGCCTGCAAAAAATAAAAAAAGTG
CGAAAGGCGGCTCCAAAGACCCCTTAACAGTACGTCCTTGTTGTGATGTG
ATCCGACCTCTCCATATGGTTTGCAGATATGTCAGGAGTACCATGTGTTG
GGGTATCGGGCCATCCTGCAGACTCCAAAGCATGTCATCAACGGGATCGT
CGTGCACTTAGCCGTGAGAGCACTGAGGTGGCACATCGACCGCATGCTGG
GGCGCAACTTTCTGTCGGGGGATGGGGTGAGTCGCGCTCGGTAATATATG
ACGTCGTTGTTGATACCTTCACTACTGTACGAGTACTGTAAATTTGTTTT
TGTATACTTTGTACCCTACGACACCCAGCATCAGCGTCTTGTGTTGGCAA
TGCTGAAAATGCAGAAAATGGGAGAGTTAAGGGTGCCGACAACAAAATGC
AAAGAAATTTCCAATGGAAATCGTTGAACCCCCCTCTCCCTCTCTTCTGT
TAGGAGTAGGAACGGTACTTCGTCTCGAAATGCATGCGTGGTCAATGACT
AAGGCAAGCAACAAGTTATAGCCCTACCCCCCCTCCCCCGCCCCCCGACC
GCCTTCGTCCTACAAACAGGCTATGCCAAATTTCTTCGTGTCGTCACCGA
AGAACCAGGACGATGGTCCCGATGGCGACAAGCCTCCGGTCCTGTGGCCG
TGGAAATCCGGACATGCCGCAGCGCAATCGAAGGTGTGCTATGATACAAG
TACTCGTGTTTTTTCGTTCCCATTTTTGTTATCTTTCGTCGCTATCTCCA
GCTGCTCCATCTCATTTCTCTTCGTAATTCAGATCTGGGGTCACATATTA
TATTATAACTTATCGGAGGACCGATAGAATCCGCGCGACCGATGTATCAC
ACAGTGAGGTTGACGATTATCCCCTGGCCCCCGAACCAGTTTGGAACGTC
ACGGCTGATGTCTTTGTAAGAAAAAAAAAATTATAGCAGGCACTCCTCCT
CCCCCCTCCCCACCACAGGTTTGGTGTATACATATGTATCTACATCTATT
GTATAATGGTATAATAGCAACAACGTCCGGGTGGTGCTTTTTCATAGTAA
TAAGCTATAATACCTGCAATATTAGTTAATTATTTTTAGGAAAACAGGGC
CCTCGGAGGTGATTTCTACCACTTATTGCGTACTTAAGTATATGACCCCC
CCCCCCCTCGCCCCCCAGGGCCTCTGTGAAAAAAACGTCTGATTTGCGGG
TAGCTTGTAGCAGTGCAGCTGGTACAGCAATTCTCGTGAAAGACAGCGTC
GCCCGGCGACCACGCCGGTGTTGTTTTTGTGGGGGCTCGAGGTCAGAGGT
CTATAATAGTACACTATGGCATGCGTTATCATGAGTACACCCTATAATAC
ACGCCCTGTAGTTCTAGTCGTGCAGTCGTCTCAGCTGTAGATGATCGGTC
TTTGTGAAACCGCGTTTGACTCGGTTAAATGTTAACCCCTCCCCCCTCAC
TTCTTTGGTGCACGCGATGTCTGCCTGGTCGGTGTGAAAACCCGACGTGC
TCCGTCCCGGCATAGTTGGGATGCGAGGGTCTATGGTTATACGACTACGG
CCATGCATGAAATGAGTACACCCCCCCCCCTCATCCTCCTCTCTCTCCGC
TCCCTCCCCTCCCCTACGGACTCCTTGTGCGCGCGCCACACCGTGATGAT
AGAACCATTCCGATGTAGAGTCTACTACTAGTGATCACGACCAGCGCCAC
GGTTGGTGGGATTCGGGCGGCGGTGGGGGCGGCGCGGGCAGCAGAAAGGA
AAACCGCGCG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig105:812818..819627-

>mRNA_D-herbacea_F_contig105.562.1 ID=mRNA_D-herbacea_F_contig105.562.1|Name=mRNA_D-herbacea_F_contig105.562.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1062bp|location=Sequence derived from alignment at D-herbacea_F_contig105:812818..819627- (Desmarestia herbacea DmunF female)
ATGGCGCTTGTAGATACTCAAGGCTTCGTCATGGCTGTGGACAGGTCTCT
CTTTGGACCCCAGGGGAGACGATGGATCGAGCGCAAGCTGCCCGACGTTG
CCACTAACATCTCCTTCATCGCCGTCTCTGCCTTCGGGGCATGCGTGCTC
GTGTTTCACATGGCGCTTGTAGATACTCAAGGCTTCGTCATGGCTGTGGA
CAGGTCTCTCTTTGGACCCCAGGGGAGACGATGGATCGAGCGCAAGCTGC
CCGACGTTGCCACTAACATCTCCTTCATCGCCGTCTCTGCCTTCGGGGCA
TGCGTGCTCGTGTTTCACATATGTCAGGAGTACCATGTGTTGGGGTATCG
GGCCATCCTGCAGACTCCAAAGCATGTCATCAACGGGATCGTCGTGCACT
TAGCCGTGAGAGCACTGAGGTGGCACATCGACCGCATGCTGGGGCGCAAC
TTTCTGTCGGGGGATGGGATATGTCAGGAGTACCATGTGTTGGGGTATCG
GGCCATCCTGCAGACTCCAAAGCATGTCATCAACGGGATCGTCGTGCACT
TAGCCGTGAGAGCACTGAGGTGGCACATCGACCGCATGCTGGGGCGCAAC
TTTCTGTCGGGGGATGGGGCTATGCCAAATTTCTTCGTGTCGTCACCGAA
GAACCAGGACGATGGTCCCGATGGCGACAAGCCTCCGGTCCTGTGGCCGT
GGAAATCCGGACATGCCGCAGCGCAATCGAAGGCTATGCCAAATTTCTTC
GTGTCGTCACCGAAGAACCAGGACGATGGTCCCGATGGCGACAAGCCTCC
GGTCCTGTGGCCGTGGAAATCCGGACATGCCGCAGCGCAATCGAAGAACC
ATTCCGATGTAGAGTCTACTACTAGTGATCACGACCAGCGCCACGGTTGG
TGGGATTCGGGCGGCGGTGGGGGCGGCGCGGGCAGCAGAAAGGAAAACCG
CGCGAACCATTCCGATGTAGAGTCTACTACTAGTGATCACGACCAGCGCC
ACGGTTGGTGGGATTCGGGCGGCGGTGGGGGCGGCGCGGGCAGCAGAAAG
GAAAACCGCGCG
back to top