mRNA_D-herbacea_F_contig105.558.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.558.1
Unique NamemRNA_D-herbacea_F_contig105.558.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig105.558.1 vs. uniprot
Match: A0A6H5KX33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX33_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 8.420e-41
Identity = 100/211 (47.39%), Postives = 121/211 (57.35%), Query Frame = 1 
Query:  136 MNERHQPPTLVDLKAKYFQHILAVSPTQDPTLRS--------------RPTGCTCLFSEVG-------------EEPGTTTVDTFATAAVAPCASDVLAEEAVEMLSPGEKDEIILQMHAKIRSLNGRVEEVIALSERTVYSQERAHEEALREQRASEQRLRRELSQWKHCHPVVTELLEENARLREEAHLGRRQYLAALGKLARRQELLE 687
            M  R  P T+  LK KYFQH+L VS T+ P+L S              R T CTC  + +G             +E   +T     T    P +SD LA+EA+ +LS  EKD IIL MHAK+R L+ R E+  ++SER V   ERAH +ALRE+  SEQRLR EL QWKH HP V EL  EN RLREE    +RQYLA LGKLARR  LL+
Sbjct:    1 MTTREPPSTISGLKTKYFQHVLDVSSTE-PSLSSSSSSEAAVRWDQPTRRTECTCRTTMMGCTCWGDTKEAYPSDEDAPSTTHVLRTPPPVPSSSDALAKEALSILSQAEKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPEVAELRLENQRLREEKDHSQRQYLAVLGKLARRHTLLK 210
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BLAST of mRNA_D-herbacea_F_contig105.558.1 vs. uniprot
Match: D7G3C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.490e-17
Identity = 52/95 (54.74%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:  406 MHAKIRSLNGRVEEVIALSERTVYSQERAHEEALREQRASEQRLRRELSQWKHCHPVVTELLEENARLREEAHLGRRQYLAALGKLARRQELLET 690
            MHAK+R L+ R E+  ++SER     ERAH +ALRE+  SEQRLR EL QWKH HP          RLREE    +RQYLA LGKLARR   L+T
Sbjct:    1 MHAKLRHLSHRAEDARSVSERKACCLERAHRDALRERMLSEQRLREELRQWKHHHPE---------RLREEKDHSQRQYLAVLGKLARRHTWLKT 86
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX33_9PHAE8.420e-4147.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C8_ECTSI5.490e-1754.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:753705..759081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_002850.1
Exons5
Model size719
Cds size564
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.3661432-UTR-D-herbacea_F_contig105:753704..7537241622927465.3661432-UTR-D-herbacea_F_contig105:753704..753724Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 753705..753724 -
1690790185.6192386-UTR-D-herbacea_F_contig105:753704..7537241690790185.6192386-UTR-D-herbacea_F_contig105:753704..753724Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 753705..753724 -
1622927465.436096-UTR-D-herbacea_F_contig105:758946..7590811622927465.436096-UTR-D-herbacea_F_contig105:758946..759081Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 758947..759081 -
1690790185.6769593-UTR-D-herbacea_F_contig105:758946..7590811690790185.6769593-UTR-D-herbacea_F_contig105:758946..759081Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 758947..759081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927465.379082-CDS-D-herbacea_F_contig105:753724..7538471622927465.379082-CDS-D-herbacea_F_contig105:753724..753847Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 753725..753847 -
1690790185.6308877-CDS-D-herbacea_F_contig105:753724..7538471690790185.6308877-CDS-D-herbacea_F_contig105:753724..753847Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 753725..753847 -
1622927465.3908708-CDS-D-herbacea_F_contig105:754385..7545321622927465.3908708-CDS-D-herbacea_F_contig105:754385..754532Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 754386..754532 -
1690790185.640371-CDS-D-herbacea_F_contig105:754385..7545321690790185.640371-CDS-D-herbacea_F_contig105:754385..754532Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 754386..754532 -
1622927465.401522-CDS-D-herbacea_F_contig105:755549..7557081622927465.401522-CDS-D-herbacea_F_contig105:755549..755708Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 755550..755708 -
1690790185.6486006-CDS-D-herbacea_F_contig105:755549..7557081690790185.6486006-CDS-D-herbacea_F_contig105:755549..755708Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 755550..755708 -
1622927465.414609-CDS-D-herbacea_F_contig105:758415..7584831622927465.414609-CDS-D-herbacea_F_contig105:758415..758483Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 758416..758483 -
1690790185.6580205-CDS-D-herbacea_F_contig105:758415..7584831690790185.6580205-CDS-D-herbacea_F_contig105:758415..758483Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 758416..758483 -
1622927465.424441-CDS-D-herbacea_F_contig105:758879..7589461622927465.424441-CDS-D-herbacea_F_contig105:758879..758946Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 758880..758946 -
1690790185.6677694-CDS-D-herbacea_F_contig105:758879..7589461690790185.6677694-CDS-D-herbacea_F_contig105:758879..758946Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 758880..758946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.558.1prot_D-herbacea_F_contig105.558.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 753725..758946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.558.1

>prot_D-herbacea_F_contig105.558.1 ID=prot_D-herbacea_F_contig105.558.1|Name=mRNA_D-herbacea_F_contig105.558.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=188bp
MNERHQPPTLVDLKAKYFQHILAVSPTQDPTLRSRPTGCTCLFSEVGEEP
GTTTVDTFATAAVAPCASDVLAEEAVEMLSPGEKDEIILQMHAKIRSLNG
RVEEVIALSERTVYSQERAHEEALREQRASEQRLRRELSQWKHCHPVVTE
LLEENARLREEAHLGRRQYLAALGKLARRQELLETRR*
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mRNA from alignment at D-herbacea_F_contig105:753705..759081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.558.1 ID=mRNA_D-herbacea_F_contig105.558.1|Name=mRNA_D-herbacea_F_contig105.558.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5377bp|location=Sequence derived from alignment at D-herbacea_F_contig105:753705..759081- (Desmarestia herbacea DmunF female)
GTGTTCAACATGGCTTGATACTGCTCTCTGTCTTGCCTTAATGTCCGGTG
TGATTCATAGGACAGCAGCAGGTATTACACGTTGCAACATTTCCTTCGCA
TCGGGTGTGCGACAACGACGACATTGCGACGTATCATGAATGAACGACAT
CAGCCACCGACACTGGTGGACCTCAAGGCAAAGTACTTCCAGCATATCCT
AGGTGTGTGGGTGTTGCATGACTCCAAAAGCAGTTCTACTACTATCATAA
GACGTTCTGCATACGAGATATTATACTGCGAATTTGACAGATAGATAGGG
GTGTATCATAAGAGGGACGATCCGTCCTTTCAGACATATCAATCCGCAAG
CGCATTCTTCATTAGTACCTTGTACCTGGTAGGCATCAACTTGGCAAGAC
GTACAGTAGTAGACGGATTGCAACAACACCAACAGAGATATCAAACTACA
CTGATCGTATACTACTGTCGCCTGGTGCGATGCGTACGTCGACTTTGAAT
CCGCAAAACAGAAGATTTAATTAACCCCCCCGCCACGTCGTCGTGTATCC
TACACCGCGCGGGTGCCTTCCTCGATCTTCGCCACCCGGGCTATGAAGCC
GTCTCCCCGACACAAGATCCAACGCTTCGTTCGCGGCCTACGGGGTGCAC
GTGCTTGTTCTCTGAGGTGAGAGCCAACGAAGCTATGGTAGTAGGAGGCC
CAAAGAGGCATATGCTGTTCAGTCCAACTTCGATGCGTGCCTAAATTCCA
CTCTGCAAAGTGGTAGGGGTGGCCCGGTGGTCTAATGGCTAGGGTATTTC
CTCTGTTGGCGGAAGTTGTGGGTTCGATTCCCGGTGGCACTTTTCTGTGT
CATTTTCCGTCGCGGAAAACGCAAGAAGAGCGTGAGTAAGCACAATTCGA
TGAAAGTCGACGAGGGAAGAAATTGCTGCACTCTTCTCGCGATAAAAATG
TAGGCAAGTACCGTAGTGGGAAGGTGGGAGGAGCGCCTACTATGTGACCC
CGGATCTGAGTTACGAAGAGGGATGGAGCTAGAGTAAGACTAGGGCGAAG
ATAATAAATGGGACGAGAAAAAAAAAAAAAAAAAAATGTTCCGACGCACC
GGAAACCAGAAACCGATCTGTTGTTCTTGTGAATACTATTATTAATAATA
CTACTGTCTGTTGCACAGCAGACAACAACAGCATACTCGCACATTTTCAT
ATGATAGATCGATTATCGATTAACTGTACGAGTGTAACACACGGTACGTT
TTTCCTGAGAGCTTTCCGTCCCGACGCTCGAGAGCCGAGAGCGCAGCATT
GTTTCGGAATGCGCTCCGGCATTTCCGCGCGCCCGCATTGGCCGCTGTCT
ACTTTTTGCGTTTTCTCATTGGTTCCGTCGGACATGCACTTCTCCACTCG
GATATTGATAATTATACAAGGCGCCTACCGGGCAGTGAACTGCCCGGCAG
GCTCGCAGGATTGTAGGGCGCATGCCAAGGGTGTGAGGGGAAATCTGCAA
GGAGGCAACGAACACAAAATTCATCGTACGAGTAGGTGCATGGCTCAGTA
GTAGTAGTATAATAACAGTCTAGGTGGACGGCTCTTATCAACACATATGG
GTACCTGGAATTTTCCCCCAATATCCGTTGAATCTTCGAAGAGGAACAAA
ACAGGACTGTACAGCAAGTTGCCAGAATGAACAAGCAGAAAGTGTGGTGC
TCAGCGTAGTTGTTGTGAGAGGTGTATCTACACTTGCGTCGCACGGCGAC
ACCCACAGACAGCCCACTGAGACATACGAGCTATTGCACGATAGCTCATG
ATTAGCAGCAACCGGCATGCCACGTTTGAGCAAAATCCATGCAGTATCGG
AGGAGTGACACCTATCCGCGTGAACTTGTCTCGTAATTTTTCAAGCAAAA
ACGTGCTCAAGGGACTGTTTGCTTCACCACGCCGTCACAAAGAACATCGC
TTCTCCTGCGATTCGGGACCTATTGATCCCTCAAGGGCCAACTCACAAGC
TATCAAACGTTGCTTTGGGTGCAGTGTGACTCTCGCACTTCGCGGTTTGG
TGCGGTCAGATGGTGCTTTAGTCGTATGGGTAACATTGCCGCATTTATTT
GGTGCGTTTTAGAATCTCTTACGATTTTTTGTTGTGCCGTTCCTGGCAAA
AGGAAGGGCGTTATTTGCAATGAAATGTAAAGCCGTTTTTGTATTGGTAT
TTGTGCGGTTTTTTCCGCGAAGATCCGGGGGCGAGGATCCATGGTTGAAC
TCTGCGCTGTCAAGCGTTTGGGACAGTCCTAGATAGGTTTATGTTGATAT
ATTTTGGTCCGCATTCGGGGCGATTTTGAGATACTATGATGTCTTTCCAC
CACTCTGCAAAGATCGCTGCCCACCATCTCTGCTTTCTCGTCCACAGGCA
CTCGGCAAGCCGTACCAACCAGCCTTCTTCTCCTCTCCTCTTCACCCTAA
AGCGCGTGACGTGTGTCTGTGCTACTTTTGTTTCTGGTGACATCCGTGCT
GTAACAGTTAGATGTTTGTTGGATTTTGAGCTGCGGCGTGCAGTGTTTGA
GACATGATTATTCTACTGTACCTCACACACCACTCCACTACGCTCTCCTC
TTAGCCAGTATTCTGCCAACCACATCAGTCAACTGCCCCCCTCCACTTCG
CGATATGCTTGAAGCGCGTAGTCTGTGGCTTGCCTGTTGTGCTACTGTTC
GTTGGTTCTATGATAGTGACCTTGTCCGTGCTGTTGTCGTTTTTGTTGTT
GTTGTAACTTCCTATCGTGACGGTTCTGTCATGTTTCGTATCACACCCAC
CATCCTCCTCTCCTCTCTAGCCAGTACTACTGTACTCTAGCGAGCGGGCA
CACTGGTCAGTCCTCCGCATATGTGCATATCATGTGAAGCATGTAATGTA
TACCTCTAGTATGTGTATCGCTGCTGCCGCCTGCCTGTCGTGTCTTTGCT
GTCGTGCGTTTTTTTTTTTTGTCCTTTCTGATAATATAATAGCCTTCGTG
CTGTTTTGAGCTTCTTCACAACAACAAATACGTAGAATAGTGTTCTACGG
CAAGTAGTCGTATGTAACACATACCAGCCGCTTTATTAGAGGCTATTGTA
CTGCTTTTGCCATCATAAAGTGTCATTTTTTGTTTGCCAACCTTTTTCGC
CAGAAAAAAGGAGGCGAAAACCTCTTTTCCTGGTGGGTCGGACGTGCACG
ATCAGCAATACGCAAAATGGAAAAAATTAAATCGAGATCATATTCGGCTC
GCACGGACACGCACATATTTCTCTCTCTCCCGCGATCATCGCCGCCTGCT
GTCCTCATGTTTAGCACTTTTCATAAAACGAAGTTGAAATACCTATTTCT
TGCTCATACATGCGGATACGCAGGTAGGAGAAGAACCTGGCACTACTACT
GTCGATACTTTCGCAACCGCTGCAGTGGCGCCTTGTGCGTCCGACGTGCT
CGCCGAAGAAGCTGTCGAGATGCTGTCTCCCGGGGAGAAGGACGAGATCA
TCTTGCAGATGCACGCAAAAATTCGCAGCCTGGTGAGTACTTGAGTGAGT
GAGTTTTTAAGATATGCGAAGTAATGCGATATCGTGCATATCGGGATGAT
ACACTTGGTCCGCCACGAAGGGCTCACCGTATCTATGTCGGTGGGCCTAG
CGGCGTCCTTCGCTTTGTGAATCGCCGACTGAAGGATGTTCGTCCATGCT
TGCAGGTTGTTCGTAGATCCGGCGTCGAGCGCCCACTTTCGTACAATGCG
ATGGCCACGCACGAAAGTAGACGTTCGACGCTGGATCTGCCGACAACCTG
CAAGTTTGAATGCATATCTTTCAGTTCGCGATTCGCAAAGCGAAGGACGC
TGCCAGACCCGCCGGCATAAATAAGGTGAGCCGTTCATGGCGGACAAAAG
TGTATCATCCTATATGCACGACATCGCATTATGTAATACCTGATACAGAA
CTAAACGGATAGTTTGGAAGAAAAAAAGTCAGTGCTATTGTTCGTAGCAC
GCTCCGACTTAGAATTTGTCGTTTGCTCGCCTCTATTTGACCATGAGCAA
AAAACTCCAACCATCGGGACTACTCATACTTTCCCTGCCGATCTTACGAT
AGTGGCAATACGCCTTTTTTGCCTTGTGACGGCGTTGCTGAGAGCTGTTT
GTTGCCCTTCGTATATGGAGTTGGCATTGATGCTGGACGGACGACAGACC
CCGCATAAATTAATCGGTTTCCCTTCAGCTGCCGGCCAAGAAGCATGCAA
ATACCGATCGATCGCCCTTTTCGTTGCTGTGATAGTATACTTCGTATATT
AAATGGTGAATAGTGAGTTATGACCTCCCAAGGAATTGTTATTATATCTA
AAAAAGAGTGCTAGCTGGTTTTTGTATTTTATCCTCCGGGGGATGGGTAA
AATAAAAAATAAAGCCTTAGCTCCACATAATTTCCACTTTTCAATTTTTT
TTAACGTTCTCTCTTTCTTTTTTAACGCCTCTTTTTCTGTTTTTTTTTTT
TTAGCATTTTGACCTTCTCTTCGTCGTTGTTGTTATTGGTGATCCGCAGA
ACGGCCGGGTGGAAGAGGTGATCGCCTTGTCTGAACGCACGGTGTACTCT
CAGGAGAGGGCCCACGAGGAGGCCCTTCGGGAGCAGAGGGCGTCTGAGCA
ACGTCTACGGCGAGAGTTATCGCAATGGAAACACTGCCATCCCGTGGTGA
TTTGGTTTTTGATGATTTCGCCCACACTACTCTTTGTGTCGCATCCCTTT
TTTCGCCACTAATTAATTAGATAATTCTTGTTTTTAGTATTGTTGCGCCG
GGGAACCTCCATAGTTCCATACAATTTATATCTCAAGCAATGGTTGAATG
GAATGATATGGAGGCGTCTTGGAGGACATGAGGGAAGTAGACGAATGTGA
CATGGATAAGTTGATAAACTAGATATTAGCGAGGAAACGATCGCTATCCT
AGGAGATTTATGGTGGTCAAAAAAGGCGAAACGAGAAGGGGATACGATAA
GGTAAGCAAAAGGTTTTATGTAAGATACGGCAAAAACACAAAGAGCACCC
AATCGTTGGAGGTGTCTTTATTCGGAGTAGGAACGGTGCTCCGTCTCGAA
AGGGATGCGTGTTCAATACTCGAGTGACTGAGGCAAGAAATAAATGAGTG
CACCTCCCCCCGCCCCCACCCCCGCCGCCCCTTTCGTCCCCGTGAACTTG
GTGTCTCTCCCTTCCTAACTTGTGCTGCTAACAGGTTACTGAACTTCTAG
AGGAAAATGCTCGTTTACGCGAGGAGGCCCATCTCGGTCGACGGCAATAC
CTTGCTGCCCTAGGAAAACTCGCTCGGAGACAGGAGTTGCTAGAAACGAG
GCGATGATATAGTGTGTGTGTGGGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:753705..759081-

>mRNA_D-herbacea_F_contig105.558.1 ID=mRNA_D-herbacea_F_contig105.558.1|Name=mRNA_D-herbacea_F_contig105.558.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1128bp|location=Sequence derived from alignment at D-herbacea_F_contig105:753705..759081- (Desmarestia herbacea DmunF female)
ATGAATGAACGACATCAGCCACCGACACTGGTGGACCTCAAGGCAAAGTA
CTTCCAGCATATCCTAGATGAATGAACGACATCAGCCACCGACACTGGTG
GACCTCAAGGCAAAGTACTTCCAGCATATCCTAGCCGTCTCCCCGACACA
AGATCCAACGCTTCGTTCGCGGCCTACGGGGTGCACGTGCTTGTTCTCTG
AGCCGTCTCCCCGACACAAGATCCAACGCTTCGTTCGCGGCCTACGGGGT
GCACGTGCTTGTTCTCTGAGGTAGGAGAAGAACCTGGCACTACTACTGTC
GATACTTTCGCAACCGCTGCAGTGGCGCCTTGTGCGTCCGACGTGCTCGC
CGAAGAAGCTGTCGAGATGCTGTCTCCCGGGGAGAAGGACGAGATCATCT
TGCAGATGCACGCAAAAATTCGCAGCCTGGTAGGAGAAGAACCTGGCACT
ACTACTGTCGATACTTTCGCAACCGCTGCAGTGGCGCCTTGTGCGTCCGA
CGTGCTCGCCGAAGAAGCTGTCGAGATGCTGTCTCCCGGGGAGAAGGACG
AGATCATCTTGCAGATGCACGCAAAAATTCGCAGCCTGAACGGCCGGGTG
GAAGAGGTGATCGCCTTGTCTGAACGCACGGTGTACTCTCAGGAGAGGGC
CCACGAGGAGGCCCTTCGGGAGCAGAGGGCGTCTGAGCAACGTCTACGGC
GAGAGTTATCGCAATGGAAACACTGCCATCCCGTGAACGGCCGGGTGGAA
GAGGTGATCGCCTTGTCTGAACGCACGGTGTACTCTCAGGAGAGGGCCCA
CGAGGAGGCCCTTCGGGAGCAGAGGGCGTCTGAGCAACGTCTACGGCGAG
AGTTATCGCAATGGAAACACTGCCATCCCGTGGTTACTGAACTTCTAGAG
GAAAATGCTCGTTTACGCGAGGAGGCCCATCTCGGTCGACGGCAATACCT
TGCTGCCCTAGGAAAACTCGCTCGGAGACAGGAGTTGCTAGAAACGAGGC
GATGAGTTACTGAACTTCTAGAGGAAAATGCTCGTTTACGCGAGGAGGCC
CATCTCGGTCGACGGCAATACCTTGCTGCCCTAGGAAAACTCGCTCGGAG
ACAGGAGTTGCTAGAAACGAGGCGATGA
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