mRNA_D-herbacea_F_contig105.556.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: D7G3C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI) HSP 1 Score: 189 bits (480), Expect = 2.250e-53 Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 3
Query: 462 SIMAASSLGQDIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
S ASSLGQDIKEFLENEKD+EFEEEISRNPYRLKSWWRYLLAKEGA+RKTRN+IHERALKFLPNSYKLW+QYL ERR AVEGKC+TD ACQIV+NAHERAL+
Sbjct: 5 SAPPASSLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERALI 108
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A7S3YB58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB58_HETAK) HSP 1 Score: 128 bits (321), Expect = 1.920e-32 Identity = 65/95 (68.42%), Postives = 75/95 (78.95%), Query Frame = 3
Query: 492 DIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALVS 776
DIK FLE+E D E+EEEISRNPY LKSWWRYL K+ AR KTR V++ERALKFLP S+KLWH YL ER AVE K V D A ++V NA+ERALV+
Sbjct: 26 DIKSFLESEADFEYEEEISRNPYALKSWWRYLDHKKNARPKTRYVVYERALKFLPGSFKLWHSYLKERTLAVEDKSVLDPAREVVANAYERALVT 120
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A836CA78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA78_9STRA) HSP 1 Score: 127 bits (320), Expect = 3.310e-30 Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 3
Query: 486 GQDIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERAL 770
G++++ L + D E+E EISR P+RLK+W RYL AK R+ RN++HERALKFLP SYKLWHQYL ER +AVEGKC+TD ACQIV+N ERAL
Sbjct: 8 GEEVQALLADATDFEYETEISRAPFRLKNWVRYLAAKTSTNRRARNILHERALKFLPTSYKLWHQYLTERLSAVEGKCITDPACQIVVNTFERAL 102
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A151NRD7_ALLMI (Pre-mRNA-splicing factor SYF1-like n=2 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NRD7_ALLMI) HSP 1 Score: 97.4 bits (241), Expect = 4.300e-22 Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 3
Query: 516 EKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
E+D+++EEEI RNP+ +K W RY+ K+ A R N+++ERALK LP SYKLW+ YL +RR V+ +CVTD A + V N HERALV
Sbjct: 19 EEDLQYEEEILRNPFSVKCWMRYIEFKQSAPRHALNLLYERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPAYEEVNNCHERALV 104
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: I6M4B7_KRYMA (XAB2 (Fragment) n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=I6M4B7_KRYMA) HSP 1 Score: 97.8 bits (242), Expect = 6.470e-22 Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 3
Query: 522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
D+ +EEEI RNPY +K W RY+ K+ + T N+I+ERAL+ LP SYKLW+ YL ERR V+GKC+T+ A + V N HERALV
Sbjct: 13 DLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALRELPGSYKLWYNYLRERRKQVKGKCITEPAFEEVNNCHERALV 96
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A0S7LQ32_9TELE (SYF1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LQ32_9TELE) HSP 1 Score: 99.4 bits (246), Expect = 7.580e-22 Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 3
Query: 522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
D+ +EEEI RNPY +K W RY+ K+ + T N+I+ERALK LP SYKLW+ YL ERR V+GKC+TD + V N HERALV
Sbjct: 46 DLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERALV 129
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A672MZQ1_SINGR (XPA binding protein 2 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672MZQ1_SINGR) HSP 1 Score: 103 bits (257), Expect = 1.890e-21 Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 3
Query: 507 LENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
L+ + D+ +EEEI RNPY +K W RY+ K+ A++ N+I+ERALK LP SYKLW+ YL ERR V+GKCVTD A + V N HERALV
Sbjct: 4 LQEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALV 92
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A2G9SJ12_LITCT (Uncharacterized protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9SJ12_LITCT) HSP 1 Score: 94.7 bits (234), Expect = 3.710e-21 Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 3
Query: 516 EKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
E D+++EEEI RNPY +K W RY+ K+ A N+I+ERALK LP SYKLW+ YL +RR V+ +C+TD A + V N HERALV
Sbjct: 8 EDDLQYEEEILRNPYSVKCWMRYIEFKQSASAHALNLIYERALKELPGSYKLWYAYLKQRRKQVKRRCLTDPAFEEVNNCHERALV 93
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A673G278_9TELE (XPA binding protein 2 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673G278_9TELE) HSP 1 Score: 101 bits (252), Expect = 6.460e-21 Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 3
Query: 522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
D+ +EEEI RNPY +K W RY+ K+ A++ N+I+ERALK LP SYKLW+ YL ERR V+GKCVTD A + V N HERALV
Sbjct: 16 DLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALV 99
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Match: A0A8C1DYQ7_CYPCA (XPA binding protein 2 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DYQ7_CYPCA) HSP 1 Score: 101 bits (252), Expect = 6.780e-21 Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 3
Query: 522 DVEFEEEISRNPYRLKSWWRYLLAKEGARRKTRNVIHERALKFLPNSYKLWHQYLGERRTAVEGKCVTDAACQIVINAHERALV 773
D+ +EEEI RNPY +K W RY+ K+ A++ N+I+ERALK LP SYKLW+ YL ERR V+GKCVTD A + V N HERALV
Sbjct: 19 DLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALV 102 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.556.1 >prot_D-herbacea_F_contig105.556.1 ID=prot_D-herbacea_F_contig105.556.1|Name=mRNA_D-herbacea_F_contig105.556.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=105bp MAASSLGQDIKEFLENEKDVEFEEEISRNPYRLKSWWRYLLAKEGARRKTback to top mRNA from alignment at D-herbacea_F_contig105:742337..747333- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.556.1 ID=mRNA_D-herbacea_F_contig105.556.1|Name=mRNA_D-herbacea_F_contig105.556.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4997bp|location=Sequence derived from alignment at D-herbacea_F_contig105:742337..747333- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:742337..747333- >mRNA_D-herbacea_F_contig105.556.1 ID=mRNA_D-herbacea_F_contig105.556.1|Name=mRNA_D-herbacea_F_contig105.556.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=630bp|location=Sequence derived from alignment at D-herbacea_F_contig105:742337..747333- (Desmarestia herbacea DmunF female)back to top |