mRNA_D-herbacea_F_contig105.551.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.551.1
Unique NamemRNA_D-herbacea_F_contig105.551.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: D8LSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.770e-35
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAGVEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IDMGGGMDMF 333
            MSISKE HDELCTSYAALALYDGDAEIT DQ++ALITATGNEVE YWPTLFSGFLAKAG+EKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IDMGGGMDMF
Sbjct:    1 MSISKELHDELCTSYAALALYDGDAEITSDQLSALITATGNEVEGYWPTLFSGFLAKAGIEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMF 112          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: A0A835YXP2_9STRA (60s acidic ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.370e-29
Identity = 86/107 (80.37%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   22 HDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAGVEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGG 342
            HDELCTSYAALALYDG+AEIT +Q+  LI ATGNEVE YWPTLF+ +LAKAG+E LILA       XXXXXXXXXXXXXXXXXXXXXXXXXXXX+DMGGGMDMFGGG
Sbjct:    5 HDELCTSYAALALYDGEAEITSEQLKTLIEATGNEVEAYWPTLFASYLAKAGIEDLILAVGSAPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGG 111          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: F0WMR0_9STRA (Uncharacterized protein AlNc14C160G7746 n=2 Tax=Albugo TaxID=65356 RepID=F0WMR0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.680e-24
Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAG--VEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGG 339
            M +SKE+HDELC SYA+L L+DG+AEIT D + ++ITA+GNEVEPYWPTLF+GFL+K G  ++ +         XXXXXXXXXXXXXXXXXXXXXXXXX    +D+GGGMDMFGG
Sbjct:    1 MPLSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITSGGPSSGAXXXXXXXXXXXXXXXXXXXXXXXXXEEADMDLGGGMDMFGG 115          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: A0A8K1CSL3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSL3_PYTOL)

HSP 1 Score: 96.3 bits (238), Expect = 2.010e-23
Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAGVEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGGK 348
            M +SKE+HDELC SYA+L L+DG+AE+T D +  +I A+GNEVEPYWPTLF+G L+K G + L L      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGGGG 
Sbjct:    1 MVLSKEQHDELCVSYASLILFDGEAELTSDALTTVIKASGNEVEPYWPTLFAGLLSKEG-KVLELISSGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGGGMDMFGGGGS 115          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: W4G6T9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G6T9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.640e-23
Identity = 85/114 (74.56%), Postives = 100/114 (87.72%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAG-VEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGG 339
            M+I+KE+HDEL  SYAAL L+DGDAEIT + ++ +ITA+GNEVEPYWPTLF+G L+K G + +LI + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  D+GGGMDMFGG
Sbjct:   25 MAITKEQHDELAVSYAALVLFDGDAEITSEALSNVITASGNEVEPYWPTLFAGLLSKEGKLLELITSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADLGGGMDMFGG 138          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: K3WS98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS98_GLOUD)

HSP 1 Score: 92.8 bits (229), Expect = 4.510e-22
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAGVEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGG 342
            MS+SKE+HDELC SYA+L L+DG+AEIT D I+A+I A+GNEV PYWPTLF+  LAK+  + L L    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  D+G GMDMFGGG
Sbjct:    1 MSMSKEQHDELCVSYASLVLFDGEAEITSDAISAVIAASGNEVAPYWPTLFASLLAKSD-KVLELISSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEADLGAGMDMFGGG 113          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: A0A0P5M2D2_9CRUS (Putative 60S acidic ribosomal protein P1 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5M2D2_9CRUS)

HSP 1 Score: 92.8 bits (229), Expect = 4.770e-22
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAGVEKL-ILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGG 342
            M+ISK +HDELC +YA LAL+DG+AEIT D I ALI A+GNEVEPYWP+LF+G L K+  + L +++     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++GGGMDMFGGG
Sbjct:    1 MAISKAQHDELCVTYATLALFDGEAEITSDAIAALIKASGNEVEPYWPSLFAGLLGKSNKKILDLISSGGPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIGGGMDMFGGG 115          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: A0A024UC28_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UC28_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.840e-22
Identity = 80/116 (68.97%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAG--VEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGG 342
            M+I+KE+HDEL  SYAAL L+DG+AEIT + ++ +I A+GNEVEPYWPTLF+G L+K G  +E +       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  D+GGGMDMFGGG
Sbjct:    1 MAITKEQHDELAVSYAALILFDGEAEITSEALSTVIAASGNEVEPYWPTLFAGLLSKDGKMLELITSGGAIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADLGGGMDMFGGG 116          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: A0A2D4BHZ5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ5_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 1.820e-21
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAGVEKLI-LAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGG 342
            M +SK++HDELC +YA L L+DG+AEIT D I A+I A+GNEVEPYWPTLF+G  +K G  K++ L      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGGG
Sbjct:    1 MVLSKDQHDELCATYATLVLFDGEAEITSDAIAAVIKASGNEVEPYWPTLFAGLFSKDG--KIVDLISSGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLGGGMDMFGGG 113          
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Match: M4B8T5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8T5_HYAAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.030e-21
Identity = 76/113 (67.26%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    4 SISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTLFSGFLAKAG--VEKLILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFG 336
            +ISKE+HDELC SYA++ L+DG+ EIT + IN ++TA+GNEVEPYWPTLF+  L+K G  ++ +         XXXXXXXXXXXXXXXXXXXXXXXXXXXXX+DMGGGMDMFG
Sbjct:    4 TISKEQHDELCVSYASMMLFDGEHEITSEAINTIVTASGNEVEPYWPTLFASLLSKEGKILDLISSGGAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSD6_ECTSI4.770e-3593.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YXP2_9STRA2.370e-2980.3760s acidic ribosomal protein-domain-containing pro... [more]
F0WMR0_9STRA7.680e-2466.09Uncharacterized protein AlNc14C160G7746 n=2 Tax=Al... [more]
A0A8K1CSL3_PYTOL2.010e-2370.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4G6T9_9STRA5.640e-2374.56Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
K3WS98_GLOUD4.510e-2272.81Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0P5M2D2_9CRUS4.770e-2270.43Putative 60S acidic ribosomal protein P1 n=1 Tax=D... [more]
A0A024UC28_9STRA9.840e-2268.97Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2D4BHZ5_PYTIN1.820e-2170.43Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
M4B8T5_HYAAE2.030e-2167.26Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:627701..629146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue9.2e-27
Seed eggNOG ortholog2880.D8LSD6
KEGG koko:K02942
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translational elongation
EggNOG OGsCOG2058@1,KOG1762@2759
Ec32 ortholog descriptionRibosomal protein L10/L12
Ec32 orthologEc-21_003290.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927464.2947602-CDS-D-herbacea_F_contig105:627700..6279791622927464.2947602-CDS-D-herbacea_F_contig105:627700..627979Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 627701..627979 -
1690790184.9678435-CDS-D-herbacea_F_contig105:627700..6279791690790184.9678435-CDS-D-herbacea_F_contig105:627700..627979Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 627701..627979 -
1622927464.306667-CDS-D-herbacea_F_contig105:629074..6291461622927464.306667-CDS-D-herbacea_F_contig105:629074..629146Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 629075..629146 -
1690790184.982614-CDS-D-herbacea_F_contig105:629074..6291461690790184.982614-CDS-D-herbacea_F_contig105:629074..629146Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 629075..629146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.551.1prot_D-herbacea_F_contig105.551.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 627701..629146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.551.1

>prot_D-herbacea_F_contig105.551.1 ID=prot_D-herbacea_F_contig105.551.1|Name=mRNA_D-herbacea_F_contig105.551.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=117bp
MSISKEKHDELCTSYAALALYDGDAEITGDQINALITATGNEVEPYWPTL
FSGFLAKAGVEKLILAASSGGGGGGGGGGGGGGEAAAAEEEKKVEEEEEE
EIDMGGGMDMFGGGGK*
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mRNA from alignment at D-herbacea_F_contig105:627701..629146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.551.1 ID=mRNA_D-herbacea_F_contig105.551.1|Name=mRNA_D-herbacea_F_contig105.551.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1446bp|location=Sequence derived from alignment at D-herbacea_F_contig105:627701..629146- (Desmarestia herbacea DmunF female)
ATGAGCATCTCCAAGGAAAAGCACGACGAACTCTGCACTTCGTACGCGGC CCTGGCCCTTTACGACGGCGATGTGAGTGTCTGGGGTTGTGATGAAATTT TGCAACGACACGAAAGGCAGAAAAACTCACCTCCTCGCAGCCGCAAGCAA GCCTTTGGCGCTGACTGCGATTGCCTCGAATAAAGTACCGGTAGCATACA GTCGGACTGCTTCGTATCTCCGGTACGGTGGGGGTTAGTAGTCCGATGAG GAATCTGCGTAATAGTTGTTAGACTTACTAGTCGGTGCATTCCCTGGACA CGTACGCCTTGCGTATTTTGGTCGGTCAACAACCACAATTTACAATTTGC TATTTGCGATGATAGCAACTTGTTGTGCTCTTGTCTATTGTATATACTGT AGAGGTGCTCTTGTACTGTATGGCCAAGTGTTTGATGCTCACACGATCAC ACTGCCTCGTCCATACCAATTTGCGACCGAAGGGTGGTTGGTGAACAACC GAACCGTCTTGCGCCTACCGAACGAAGATGGCGTACCCAAACGGGAGTGT CGGCTACACCACGCGACAACAAAACGGTTCCACATACTTCCTACTCAATC TGTCTTAACTCACAAAGGATTCCAGTGAATTTTGGTCAGGTTTTTGGCTT GATTCACAACGCCGCACGTTTTGTCATTACTATCCCGGCAGGACAATACG ATGATGGGGCCTGTTTCCCAAAATTATCCTGTAGAGCCTGGGACACCCCA GGGGCGTTATAACTTATCTGAGGACCGATAGAATCCGCGCGACCGATGTA TCACACAGTGAGGTTGACGATTTTCTCCTGGCCCCCGAACCAGTTTGGAA CGTCACGGCTGATGTCTTTGTAAGAAAAATAATATGTGACAAAGGTACTG CTGTACTACTGTATATTTCCAGGTAAGCTCTTCTTACTGACGGGGCAACG AGCTCTGTGTACCCCAACTGGCATCCCTATTTCAAAACGGCGCCTACGAT GCAGCATCGTACGAGTATCCTAGCGTACTCCCACTCCGTCGACCCCTCCC TGATTTGCATGTCGTCCTTTTGTTCGCCCGAATGCCACCTATAACACTAC CTTGTACAGCGCTATCACTATCATAACCTGCTCTCGACACTTTTTTTTGC CTGCTGGCCCTTTCCAGGCTGAGATTACCGGCGACCAGATAAACGCGCTG ATCACGGCCACCGGCAACGAGGTGGAGCCCTACTGGCCCACCCTCTTCTC CGGGTTCCTCGCCAAGGCCGGCGTGGAGAAGCTCATCCTCGCCGCTAGCT CTGGGGGTGGCGGTGGTGGGGGTGGCGGAGGTGGAGGTGGCGGTGAGGCA GCCGCCGCCGAGGAGGAGAAGAAGGTCGAGGAGGAGGAGGAGGAGGAGAT CGACATGGGCGGCGGCATGGACATGTTCGGTGGCGGTGGTAAGTAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:627701..629146-

>mRNA_D-herbacea_F_contig105.551.1 ID=mRNA_D-herbacea_F_contig105.551.1|Name=mRNA_D-herbacea_F_contig105.551.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=702bp|location=Sequence derived from alignment at D-herbacea_F_contig105:627701..629146- (Desmarestia herbacea DmunF female)
ATGAGCATCTCCAAGGAAAAGCACGACGAACTCTGCACTTCGTACGCGGC
CCTGGCCCTTTACGACGGCGATATGAGCATCTCCAAGGAAAAGCACGACG
AACTCTGCACTTCGTACGCGGCCCTGGCCCTTTACGACGGCGATGCTGAG
ATTACCGGCGACCAGATAAACGCGCTGATCACGGCCACCGGCAACGAGGT
GGAGCCCTACTGGCCCACCCTCTTCTCCGGGTTCCTCGCCAAGGCCGGCG
TGGAGAAGCTCATCCTCGCCGCTAGCTCTGGGGGTGGCGGTGGTGGGGGT
GGCGGAGGTGGAGGTGGCGGTGAGGCAGCCGCCGCCGAGGAGGAGAAGAA
GGTCGAGGAGGAGGAGGAGGAGGAGATCGACATGGGCGGCGGCATGGACA
TGTTCGGTGGCGGTGGTAAGTAGGCTGAGATTACCGGCGACCAGATAAAC
GCGCTGATCACGGCCACCGGCAACGAGGTGGAGCCCTACTGGCCCACCCT
CTTCTCCGGGTTCCTCGCCAAGGCCGGCGTGGAGAAGCTCATCCTCGCCG
CTAGCTCTGGGGGTGGCGGTGGTGGGGGTGGCGGAGGTGGAGGTGGCGGT
GAGGCAGCCGCCGCCGAGGAGGAGAAGAAGGTCGAGGAGGAGGAGGAGGA
GGAGATCGACATGGGCGGCGGCATGGACATGTTCGGTGGCGGTGGTAAGT
AG
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