mRNA_D-herbacea_F_contig105.547.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.547.1 vs. uniprot
Match: D7FZT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT6_ECTSI) HSP 1 Score: 547 bits (1409), Expect = 2.210e-170 Identity = 679/1362 (49.85%), Postives = 722/1362 (53.01%), Query Frame = 2
Query: 257 MSRSARHANGGAHHGRGNSDVAKYRGACPASRSDTELLELVKKMGGDEDKIQSALDDWWQNDQGEWATATKKKKAPXHQRGGGGYGNGPGGFSNGGRGMDDRRGGRGGMGG--RGVRIDDXXXXXXXRDRGYFHNDGYRGXXXXXXXR---SAPPAGGRGXXXXXXXXXHAHGSWGGQSSXXXXXXWGGNRSSSIPPQAANSXXXXXXXXXXXXXXXXXXXXXGG-AWGGSGPTAAVTAADPAEVTESXXXXXXXXXXXXXXXVGGSAPTXXXXXXATRGDPSGGSXXXXXXXXXXXXXXXSGAATAP--SPMRGDGWASSVPDPVALTPVGGGAXXXXXTEED------------------AVAWAQSNLPATSAWSRGAATIINPKPKPLPAPXXXXVXXXXXXXXXXAVASPAHSAAAAVAQPDL-VVASPGREAVAVAVAATPPLTPRQAGSMPPVSEMAPSPVVASPA-GAQATSVMSSPSPVARPV-------------------------VAVAAAXXXXXVVQPAQAPEXXXXXXXXXXXXXXXVVSPSAQLHMQKAQXXXXXXXEVSKAAVSCVASVSGEGLKMGKWGLSDTIANDESFLSFGQLSFGVSDVRGTDDQTQ-TSASVGSSTGNGWGATSGASMGWGTKDTATSPVETQGSKPPGFSSAVTASPSVPVGAGPPPGLPPLGNVKQASVHELEAEMDSLNKPHSQFAQVPKVQSKLPAAQQPQQQQVPQVSHSQAPPRQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYN-KPQYSSSGVLPQQVGNNFYGSNTSGLSSAAKPAPGGVYSAPTPXXXXXXXXXXXXXXXXHGSSSHGSPGTTASKPLYGAQSAVSSGAGVSXXXXXXXXXXMQQGXXXXXXXXXXXXXXXXXXXQGYAPTPPGMPAQVGYQYNPSAQGGYGSIYYGQQGPVQSNPYQYGYPPHQYPPSANQYQ-GGGRQGFPNMPRGYPATDYGSQG-MGMGYGQMDYSASSQYGVPPNGNAYMGDVAKDQYGEFAQDQFGMPQQMGGQGSATAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADKASGTPLSATGGGXXXXXXXXXXXXXXXXXXXXMNSHYGAG-------HSQGSRQAHGMYGGGQGS--VPQ-ADSQGAHGWQGQASGYQGHHTGNAGGWGGMMPQGGPXXXXXXXXXXXXXX---MQSQQYQYGSTGNG-EAWGNGR 4129
MSRS RHANGG G+GN+DVAKYR ACPASRSD+E++ELVKKMGGD+ KIQSAL+DWWQNDQGEWATAT X ++NG RGMDDRRGGRGGM RG+R+D DRG GYRG XXXXXX SAPPA XXXXXXXXX XXXXXX XXXXXXXXXXXXX G AW G GP A A XXXXXXXXXXXXXXX XXXXXX XXXXXXXXXXXXXXX +PM +GW+SS DPVA PVG G+ A AWAQSNLPATSAWSRGAATIINPKPKP+P XX XXXXXXXXXX +A P L VVASPG EAVA ATPP TPR GSMP V+E A + ASPA G+ V VA A + VV PA AP +QLH+QKAQ VSK + AS GEGLKMGKWGLSDTIANDESFLSFGQLSFGV DV G + Q+Q TS SVG+S GNGWGATSG++MGWGTKDTATSPVET G+KPPGFSS VTASPSVPVGAGPPPGLPPLGNVKQ VHELEAEMDSLNKPHSQF+QV K QSKLPAAQQPQ Q P ++ QG YN KPQYS+SG LPQQ XXXX XXXXX XXXXXXXXXXXXXXXXXXXQGYAPTPPGMPAQVGYQY PS Q YGSIYYGQQGPVQSNPYQYGYPPHQYPPSA+QYQ GGG Q FPNMPRGYPAT+YGSQG MGMGYGQMDYSASSQYGVPPNGN YM DV K+QYG+F QDQFGMPQQM GQG XXXXXXXXXXXXXXXXXXXX A + XXXXXXXXXXXXXXXXXXXX+NSHY +SQGSRQA GM VPQ DSQG HGWQGQ S Y GHHT NAG XXXXXXXXXXXXXX MQSQQY YGSTGNG ++WGNGR
Sbjct: 1 MSRSQRHANGG---GKGNADVAKYRDACPASRSDSEIVELVKKMGGDQAKIQSALEDWWQNDQGEWATATXXXXXXXXXXXXXXXXXXXXXYANG-RGMDDRRGGRGGMADKMRGLRLDG--------DRG-----GYRGGXXXXXXXXXXSAPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASAKAPAAGSAWTGDGPAAVSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMAHNGWSSSAQDPVAPGPVGSGSGSLGGXXXXXXXXXXXXXXXXXXXXXXAAAWAQSNLPATSAWSRGAATIINPKPKPVPVXXXVAXXXXXXXXXXXXXXXXXXAA-----HPTLPVVASPGGEAVA----ATPPQTPRPQGSMPSVAETAAA-AAASPAIGSXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAPSPVTAAVVTPATAP--------------------GSQLHLQKAQAQEASA--VSKPTAATGASAPGEGLKMGKWGLSDTIANDESFLSFGQLSFGVPDVGGPESQSQQTSTSVGTSAGNGWGATSGSAMGWGTKDTATSPVETPGTKPPGFSSTVTASPSVPVGAGPPPGLPPLGNVKQ--VHELEAEMDSLNKPHSQFSQVSKAQSKLPAAQQPQVQXXXXXXXXXXRPARQ------------------------------------------------------------QGGRGG--------------------------------------------------------------------------------YNSKPQYSNSGSLPQQX--------------------------------------------------------------------XXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGYAPTPPGMPAQVGYQYTPSGQA-YGSIYYGQQGPVQSNPYQYGYPPHQYPPSASQYQQGGGGQRFPNMPRGYPATEYGSQGGMGMGYGQMDYSASSQYGVPPNGNGYMSDVGKEQYGDFGQDQFGMPQQMSGQGGXXX---------------------XXXXXXXXXXXXXXXXXXXXGVLAEASLTRFPRARSFSAXXXXXXXXXXXXXXXXXXXXXVNSHYXXXXXXXXXXNSQGSRQAQGMXXXXXXXXXVPQQGDSQGGHGWQGQGSAYPGHHTSNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXSMQSQQYGYGSTGNGGDSWGNGR 1081
BLAST of mRNA_D-herbacea_F_contig105.547.1 vs. uniprot
Match: A0A7S3XQ19_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ19_HETAK) HSP 1 Score: 65.5 bits (158), Expect = 6.630e-7 Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 314 DVAKYRGACPASRSDTELLELVKKMGGDEDKIQSALDDWWQNDQGE---WATATKKKKAP 484
++ KYR CP SR+D E+ L++ +GG+EDKIQ A+ +WW++D+ + WA + KKK P
Sbjct: 52 EIRKYRAICPESRTDDEIHNLIQLLGGEEDKIQQAISEWWEDDRQQADAWAPVSTKKKKP 111 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.547.1 >prot_D-herbacea_F_contig105.547.1 ID=prot_D-herbacea_F_contig105.547.1|Name=mRNA_D-herbacea_F_contig105.547.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=1292bp MSRSARHANGGAHHGRGNSDVAKYRGACPASRSDTELLELVKKMGGDEDKback to top mRNA from alignment at D-herbacea_F_contig105:527356..550115+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.547.1 ID=mRNA_D-herbacea_F_contig105.547.1|Name=mRNA_D-herbacea_F_contig105.547.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=22760bp|location=Sequence derived from alignment at D-herbacea_F_contig105:527356..550115+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:527356..550115+ >mRNA_D-herbacea_F_contig105.547.1 ID=mRNA_D-herbacea_F_contig105.547.1|Name=mRNA_D-herbacea_F_contig105.547.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=7752bp|location=Sequence derived from alignment at D-herbacea_F_contig105:527356..550115+ (Desmarestia herbacea DmunF female)back to top |