mRNA_D-herbacea_F_contig105.536.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.536.1
Unique NamemRNA_D-herbacea_F_contig105.536.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:314337..314873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927459.7281344-CDS-D-herbacea_F_contig105:314338..3145641622927459.7281344-CDS-D-herbacea_F_contig105:314338..314564Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 314339..314564 -
1690790182.001907-CDS-D-herbacea_F_contig105:314338..3145641690790182.001907-CDS-D-herbacea_F_contig105:314338..314564Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 314339..314564 -
1622927459.738652-CDS-D-herbacea_F_contig105:314784..3148731622927459.738652-CDS-D-herbacea_F_contig105:314784..314873Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 314785..314873 -
1690790182.0096695-CDS-D-herbacea_F_contig105:314784..3148731690790182.0096695-CDS-D-herbacea_F_contig105:314784..314873Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 314785..314873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.536.1prot_D-herbacea_F_contig105.536.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 314339..314873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.536.1

>prot_D-herbacea_F_contig105.536.1 ID=prot_D-herbacea_F_contig105.536.1|Name=mRNA_D-herbacea_F_contig105.536.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=105bp
IQAGPDHGRSKTQRMGFNVESGVMGASPLWVVEQLSRPPTVVLELDYDDD
SDDDNDNNRRKKENVQESDEIKFKGTVGGEATALGGDERGEGESCVEEGG
KVVDE
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mRNA from alignment at D-herbacea_F_contig105:314337..314873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.536.1 ID=mRNA_D-herbacea_F_contig105.536.1|Name=mRNA_D-herbacea_F_contig105.536.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=537bp|location=Sequence derived from alignment at D-herbacea_F_contig105:314337..314873- (Desmarestia herbacea DmunF female)
ATACAGGCTGGGCCAGACCACGGAAGATCGAAAACGCAGCGGATGGGGTT
CAACGTGGAAAGTGGCGTGATGGGGGCGAGTCCTCTCTGGTGAGAGAAGC
GACAAGCGAGGGAGGGGGGGTGGGGCTCAACCCCGATCCGGGTTGGCGTT
GTGTCATGAGTTCTACGACGCGTTCATGCGTGCGTGCGTTCACGCCACAC
GGCAGTATATGTATGTCTCTCGGTTTTTGTTTTCGGCTTGTTTCGATGTG
CTTTGTTTGTTCGACACACGCGTTTTATTGCCTGTTTTTTTTGTGTTTTT
TGCACGCAGGGTGGTGGAACAGCTAAGCAGGCCTCCTACAGTAGTACTAG
AGCTAGACTACGACGACGACAGCGACGACGACAACGATAACAATCGGCGG
AAGAAAGAAAACGTGCAAGAATCCGACGAGATCAAGTTCAAAGGGACCGT
TGGCGGGGAGGCAACGGCGCTTGGTGGTGATGAACGGGGGGAGGGCGAGA
GTTGCGTGGAGGAAGGGGGGAAGGTGGTCGATGAGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:314337..314873-

>mRNA_D-herbacea_F_contig105.536.1 ID=mRNA_D-herbacea_F_contig105.536.1|Name=mRNA_D-herbacea_F_contig105.536.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=630bp|location=Sequence derived from alignment at D-herbacea_F_contig105:314337..314873- (Desmarestia herbacea DmunF female)
ATACAGGCTGGGCCAGACCACGGAAGATCGAAAACGCAGCGGATGGGGTT
CAACGTGGAAAGTGGCGTGATGGGGGCGAGTCCTCTCTGATACAGGCTGG
GCCAGACCACGGAAGATCGAAAACGCAGCGGATGGGGTTCAACGTGGAAA
GTGGCGTGATGGGGGCGAGTCCTCTCTGGGTGGTGGAACAGCTAAGCAGG
CCTCCTACAGTAGTACTAGAGCTAGACTACGACGACGACAGCGACGACGA
CAACGATAACAATCGGCGGAAGAAAGAAAACGTGCAAGAATCCGACGAGA
TCAAGTTCAAAGGGACCGTTGGCGGGGAGGCAACGGCGCTTGGTGGTGAT
GAACGGGGGGAGGGCGAGAGTTGCGTGGAGGAAGGGGGGAAGGTGGTCGA
TGAGGGTGGTGGAACAGCTAAGCAGGCCTCCTACAGTAGTACTAGAGCTA
GACTACGACGACGACAGCGACGACGACAACGATAACAATCGGCGGAAGAA
AGAAAACGTGCAAGAATCCGACGAGATCAAGTTCAAAGGGACCGTTGGCG
GGGAGGCAACGGCGCTTGGTGGTGATGAACGGGGGGAGGGCGAGAGTTGC
GTGGAGGAAGGGGGGAAGGTGGTCGATGAG
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