mRNA_D-herbacea_F_contig105.522.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.522.1
Unique NamemRNA_D-herbacea_F_contig105.522.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:117659..118897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.522.1prot_D-herbacea_F_contig105.522.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 117659..118765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927459.5094366-CDS-D-herbacea_F_contig105:117658..1177001622927459.5094366-CDS-D-herbacea_F_contig105:117658..117700Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 117659..117700 -
1690790181.9592252-CDS-D-herbacea_F_contig105:117658..1177001690790181.9592252-CDS-D-herbacea_F_contig105:117658..117700Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 117659..117700 -
1622927459.523175-CDS-D-herbacea_F_contig105:118609..1187651622927459.523175-CDS-D-herbacea_F_contig105:118609..118765Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 118610..118765 -
1690790181.967708-CDS-D-herbacea_F_contig105:118609..1187651690790181.967708-CDS-D-herbacea_F_contig105:118609..118765Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 118610..118765 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927459.6391888-UTR-D-herbacea_F_contig105:118765..1188971622927459.6391888-UTR-D-herbacea_F_contig105:118765..118897Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 118766..118897 -
1690790181.9779012-UTR-D-herbacea_F_contig105:118765..1188971690790181.9779012-UTR-D-herbacea_F_contig105:118765..118897Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 118766..118897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.522.1

>prot_D-herbacea_F_contig105.522.1 ID=prot_D-herbacea_F_contig105.522.1|Name=mRNA_D-herbacea_F_contig105.522.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=66bp
MSTQPVTSGFKIKLVKGTRSRSSNGCIEQPQRIVIPLEERKLIGIELDFS
AEARSGSGVRVSRVDV
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mRNA from alignment at D-herbacea_F_contig105:117659..118897-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.522.1 ID=mRNA_D-herbacea_F_contig105.522.1|Name=mRNA_D-herbacea_F_contig105.522.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1239bp|location=Sequence derived from alignment at D-herbacea_F_contig105:117659..118897- (Desmarestia herbacea DmunF female)
TGGAAGACAAGCCTCAGTATCGCTGTGGACGACACCTAGCCGACTGCGTC
TGCTGAGGGACGCACGCCCTTTCTTTTTGTGCGTACTGTTTGCAAGTGGA
GCTATCAGTTCCGCTTGTCGTTGAGCCAACACATGTCAACACAGCCGGTG
ACATCCGGGTTCAAGATCAAGCTTGTCAAGGGTACGCGCAGCAGGAGTTC
GAATGGCTGTATTGAGCAGCCACAACGCATCGTAATCCCCTTGGAAGAGC
GCAAGCTCATCGGAATCGAGCTGGACTTTAGCGCCGAGGTTCGTGAGCGT
GCGTGAGTGGGTAGTCTCGCAGCAGAGGGACATCACATAGACGGGCTCTC
TATTCACTGTTGCACTTCGTTTGATCTCCACAAACAAGTCGAGGATGCGC
GAGGCTACGACAAATCCAGCAAATTTCACACCTTGTTGACGTTGGTTGAT
TCTTTAGTCTTTCTCAGTCAGCAGTGATTGACAATAAGCAACAAGAAAGG
TGGAATGAGTATGGTACTCGTAAATTTATACGTAGCTATAATATACTCGT
ATCATAGAAGTTTGCATAGCTGAGGGGCACTACGCGCTTGGCCGGATGGA
ACAAAAACACTTCTAGTATGATAGGTGCTCTCAGCTTCTTAGTGTATTTC
GTTGTATATGCTACATGTCGTCTGCATAATATGCTATGCTATGATACGAG
TATATGCCCATGCCCGCCGTGGCCGCTAATGAAGGTCGGAGGTGGTGATG
GGGGGTGTCTGAACATGATACTTACCAGGTTAGGCTCTAACTCTTGGCCT
GTTCGAGGGACAGGACATCCTGGTTGTTCTCTCAGGAGTTGAACGGTACG
GTGCAGTGTGCAGTGGTGGTGTGGTACGATATATATCACTGCGCGTCAGT
AGGCAGACCACGGGTACGGTGGTGGTGTCATCGTCGCATGCCAGCATTAT
TAGCCATGGTGTCACGGCACTGATGAAGAAACTGTCTTACCACGACAACA
ACAGTCAGTTCGCAGTGTACACCATGGCGATAACACGACAATGGCCTGCT
GCTGTGTCTGCAGCTGCCTCCTCTCATTGTGATTTTACCTCCAGGGGTGC
AGCGATTCAATCAATCCAAACCAAATCAACCCTGTCTGACCTCGAAATCG
TGTCGTATGCTACTACTACTGCTACTGTATAATTATGCTCTCGACAGGCA
AGATCGGGCTCAGGTGTGCGCGTTTCCCGCGTCGATGTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:117659..118897-

>mRNA_D-herbacea_F_contig105.522.1 ID=mRNA_D-herbacea_F_contig105.522.1|Name=mRNA_D-herbacea_F_contig105.522.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=396bp|location=Sequence derived from alignment at D-herbacea_F_contig105:117659..118897- (Desmarestia herbacea DmunF female)
ATGTCAACACAGCCGGTGACATCCGGGTTCAAGATCAAGCTTGTCAAGGG
TACGCGCAGCAGGAGTTCGAATGGCTGTATTGAGCAGCCACAACGCATCG
TAATCCCCTTGGAAGAGCGCAAGCTCATCGGAATCGAGCTGGACTTTAGC
GCCGAGATGTCAACACAGCCGGTGACATCCGGGTTCAAGATCAAGCTTGT
CAAGGGTACGCGCAGCAGGAGTTCGAATGGCTGTATTGAGCAGCCACAAC
GCATCGTAATCCCCTTGGAAGAGCGCAAGCTCATCGGAATCGAGCTGGAC
TTTAGCGCCGAGGCAAGATCGGGCTCAGGTGTGCGCGTTTCCCGCGTCGA
TGTCGCAAGATCGGGCTCAGGTGTGCGCGTTTCCCGCGTCGATGTC
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