mRNA_D-herbacea_F_contig1044.509.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1044.509.1
Unique NamemRNA_D-herbacea_F_contig1044.509.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1044.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1044contigD-herbacea_F_contig1044:67835..69393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue6.4e-14
Seed eggNOG ortholog2880.D7FKP3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size331
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1044.509.1prot_D-herbacea_F_contig1044.509.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1044 67835..69393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927458.722765-CDS-D-herbacea_F_contig1044:67834..678901622927458.722765-CDS-D-herbacea_F_contig1044:67834..67890Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 67835..67890 +
1690790181.5291812-CDS-D-herbacea_F_contig1044:67834..678901690790181.5291812-CDS-D-herbacea_F_contig1044:67834..67890Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 67835..67890 +
1622927458.735903-CDS-D-herbacea_F_contig1044:68281..684281622927458.735903-CDS-D-herbacea_F_contig1044:68281..68428Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 68282..68428 +
1690790181.545165-CDS-D-herbacea_F_contig1044:68281..684281690790181.545165-CDS-D-herbacea_F_contig1044:68281..68428Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 68282..68428 +
1622927458.7503278-CDS-D-herbacea_F_contig1044:69266..693931622927458.7503278-CDS-D-herbacea_F_contig1044:69266..69393Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 69267..69393 +
1690790181.5558724-CDS-D-herbacea_F_contig1044:69266..693931690790181.5558724-CDS-D-herbacea_F_contig1044:69266..69393Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 69267..69393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1044.509.1

>prot_D-herbacea_F_contig1044.509.1 ID=prot_D-herbacea_F_contig1044.509.1|Name=mRNA_D-herbacea_F_contig1044.509.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=110bp
GANDAAVLVTVLEMMVLLRIQSNPHDSLVSALAIDDTQILLPILLPRTSG
DLFDVITEDGWPLETQLGFFLDAAEGASHLHDTVGLVHLDLKPENILVFD
HPHVHAKIAD
back to top

mRNA from alignment at D-herbacea_F_contig1044:67835..69393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1044.509.1 ID=mRNA_D-herbacea_F_contig1044.509.1|Name=mRNA_D-herbacea_F_contig1044.509.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1559bp|location=Sequence derived from alignment at D-herbacea_F_contig1044:67835..69393+ (Desmarestia herbacea DmunF female)
GGTGCGAACGATGCAGCGGTCTTGGTCACCGTATTGGAGATGATGGTGCT
GCTGCGGTGAGTTTGCACATTTTATTGCATGTACTGTACAATAGATAAGC
GGCGCAGGGGGGGGGGGGGCAGTGACGCGTGTCGAACGTGGCTGGCAAGG
GGCCTGCTATCATAGCACAACTCACTTGTGTCTCACGCCGTTGCCGTAGC
TGGAGGGCCGAGAACAGCTCCAGTGCGTACATTGTCTGTTTTGTTTTTTT
AAACTTGAGCGTCGCCTGCTTATGCATGCCGAGGGCTGCATGTTTCAAGT
ACGGCGATGAAAGGTATACGGCGCGGGTTTCAACCGCCTTTTTTGTTTCC
CTGGACATGAAATAGCTTGATAGCACTACGCCAACCTTGTCCCTGTTGTC
GTGGTCGCATCGCGTCTCGTCTCTCGTTATTTTGTTTCCCCCCTCAGCAT
TCAGAGCAATCCTCACGACAGTTTGGTCAGTGCTTTGGCTATCGATGACA
CGCAAATATTGTTACCCATCCTCCTCCCGAGGACCAGCGGTGATCTTTTT
GACGTGATCACGGAAGACGGCTGGCCGTTGGAGACACAGCTCGGGTAAGC
CTTGCCGTGGAGAACAACCGTTGTATGATCTCGCATGGCCTCGCTAACCG
GATTTTGGTGGTGGTAGTTTGGTGGCAAGGATCGTTCGGCGCCATTGTAC
AATAGGACAATTAGGAGTATCGTGTGATACCTGGCTACCGATGGCCATTG
TATGTCCTATTCTTGCGGGCGAATCTTGTCCGTCGACCGTCCGCTTGCTA
TGGTGCTTTTGAGACTGTAGAAAAAATAGCTCGCGATTCTTTTTAGCATA
ATTGATGAAGGATATCGAGTTGACGCTGTGAAGCGATGGCAGGTGTTCGA
GCTGCATACGGCCTCGGGGAGTTGGTTGATTGCCAGAGAATAGAGGATTC
CAATCCTCGCTGTTGCATACGCATGCGTTTGGACTAGCTCCATGGTAAAG
AACGTGTGGGGATGCCGCTCAGCGTAGGTATTGCGTGTTGCACTGTGACA
AGACTGTGCCATACAACCTATCACGGTGGCCCCTAGTAAATAGCCCACAA
TATAGCCCCAACACCCACGTTGACGCCTGCATCCTAAGAACTGCCACCGC
GTCAATTCCGGATCCGATTCGTTTAAACAATGCGATTGATCACAGGCTTT
CCATCGATGCTATACTTGTAATATTCCGATAACAATTGGGGGAAGGGTAA
GGGTAGACCTTCTCCCGCCTTCGCCCTTTTTCGGGCCTATTTATTAGGGG
CCACCGTGATAGTACTGTTTGGCAACTCAGAGCTATCGTTTCACACCGTT
TCCACCAACTGTGCGTCCCTTGTGCCGCCGTACCCCCCCCCACCTCTCCC
CCGCGGGCTCTCTTTGTGCCTATGGCTAATAGCTTCTTTTTGGATGCCGC
GGAAGGCGCAAGCCACCTGCACGACACGGTAGGCTTGGTCCACTTGGATC
TCAAGCCGGAGAACATTTTGGTCTTTGACCACCCGCACGTCCACGCGAAA
ATTGCCGAC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig1044:67835..69393+

>mRNA_D-herbacea_F_contig1044.509.1 ID=mRNA_D-herbacea_F_contig1044.509.1|Name=mRNA_D-herbacea_F_contig1044.509.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=660bp|location=Sequence derived from alignment at D-herbacea_F_contig1044:67835..69393+ (Desmarestia herbacea DmunF female)
GGTGCGAACGATGCAGCGGTCTTGGTCACCGTATTGGAGATGATGGTGCT
GCTGCGGGTGCGAACGATGCAGCGGTCTTGGTCACCGTATTGGAGATGAT
GGTGCTGCTGCGCATTCAGAGCAATCCTCACGACAGTTTGGTCAGTGCTT
TGGCTATCGATGACACGCAAATATTGTTACCCATCCTCCTCCCGAGGACC
AGCGGTGATCTTTTTGACGTGATCACGGAAGACGGCTGGCCGTTGGAGAC
ACAGCTCGGCATTCAGAGCAATCCTCACGACAGTTTGGTCAGTGCTTTGG
CTATCGATGACACGCAAATATTGTTACCCATCCTCCTCCCGAGGACCAGC
GGTGATCTTTTTGACGTGATCACGGAAGACGGCTGGCCGTTGGAGACACA
GCTCGGCTTCTTTTTGGATGCCGCGGAAGGCGCAAGCCACCTGCACGACA
CGGTAGGCTTGGTCCACTTGGATCTCAAGCCGGAGAACATTTTGGTCTTT
GACCACCCGCACGTCCACGCGAAAATTGCCGACCTTCTTTTTGGATGCCG
CGGAAGGCGCAAGCCACCTGCACGACACGGTAGGCTTGGTCCACTTGGAT
CTCAAGCCGGAGAACATTTTGGTCTTTGACCACCCGCACGTCCACGCGAA
AATTGCCGAC
back to top