mRNA_D-herbacea_F_contig1031.444.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1031.444.1
Unique NamemRNA_D-herbacea_F_contig1031.444.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.920e-32
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G + +AS GG  Y MIVKDDF+R  W YFL HKSDA  AFR FLA  R  G PS+++ VRSDNGGEF G  F  +C+E  +++EFT   +P++NGVAER
Sbjct:  727 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 831
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BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.920e-32
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G + +AS GG  Y MIVKDDF+R  W YFL HKSDA  AFR FLA  R  G PS+++ VRSDNGGEF G  F  +C+E  +++EFT   +P++NGVAER
Sbjct:  434 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 8.900e-32
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G + +AS GG  Y MIVKDDF+R  W YFL  KSDAA AFR FLA  R  G PS+++ VRSDNGGEF G  F  +C+E  +++EFT   +P++NGVAER
Sbjct:  633 VFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.660e-32
Identity = 58/105 (55.24%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VF DL G + IAS GG  Y +IVKDDF+R+ W YFL +KSDA  AFR FLA  R  G PS ++ VRSDNGG+F G  F  +C+E  +++EFT   +P++NGVAER
Sbjct:   95 VFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAER 199
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.300e-31
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G + +AS GG  Y MI+KDDF+R  W YFL  KSDA  AFR FLA+ R  G PS+++ VRSDNGGEF G  F  +C+E  +++EFT   +P+FNGVAER
Sbjct:  478 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 582
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.320e-31
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G + + S GG  Y MIVKDDF+R  W YFL +KSDAA AFR FLA  R  G PS+++ VRSDNGGEF G  F  +C+E  +++EFT   +P++NGVAER
Sbjct:  331 VFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAER 435
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.070e-30
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G +  AS GG  Y MIVKDDF+R  W YFL +KSDA  AFR FLA  R  G PS ++ VRSDNGGEF G  F  +C+E  +++EFT   +P++NGVAER
Sbjct:  193 VFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 297
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.090e-30
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFV+L G + +AS GG  Y MI+KDDF+R  W YFL  KSDA  AFR FLA+ R  G PS+++ VRSDNGGEF G  F  +C+E  +++EFT   +P+FNGVAER
Sbjct:  454 VFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.170e-30
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G + IAS GG  Y MIVKDDF+R  W YFL ++SDA  AFR FLA  R    PS ++ VRSDNGGEF G  F  +C+E  +++EFT   +P++NGVAER
Sbjct:  315 VFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 419
[Close]
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.290e-29
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFLADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFNGVAER 315
            VFVDL G + +AS GG  Y MI+KDDF+R  W YFL  KSDA  AFR F A+ R  G PS+++ VRSDNGG F G  F  +C+E  +++EFT   +P+FNGVAER
Sbjct:  128 VFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFHANVRADGIPSLIEIVRSDNGGGFFGGEFASVCNELVIKQEFTPAHSPEFNGVAER 232
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1031.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE1.920e-3258.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.920e-3258.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE8.900e-3258.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVR5_9PHAE9.660e-3255.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE2.300e-3157.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE2.320e-3157.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE1.070e-3057.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH25_9PHAE1.090e-3056.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE8.170e-3056.19Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5J594_9PHAE1.290e-2955.24Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1031contigD-herbacea_F_contig1031:27677..27994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.6
Seed ortholog evalue1.9e-18
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927446.854244-CDS-D-herbacea_F_contig1031:27676..279941622927446.854244-CDS-D-herbacea_F_contig1031:27676..27994Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1031 27677..27994 -
1690790176.0544546-CDS-D-herbacea_F_contig1031:27676..279941690790176.0544546-CDS-D-herbacea_F_contig1031:27676..27994Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1031 27677..27994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1031.444.1prot_D-herbacea_F_contig1031.444.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1031 27677..27994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1031.444.1

>prot_D-herbacea_F_contig1031.444.1 ID=prot_D-herbacea_F_contig1031.444.1|Name=mRNA_D-herbacea_F_contig1031.444.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=106bp
VFVDLSGPRQIASKGGARYIMIVKDDFSRYVWTYFLPHKSDAAPAFRRFL
ADARDYGTPSILQCVRSDNGGEFAGKSFRDLCDERGVRKEFTTPDTPKFN
GVAERA
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mRNA from alignment at D-herbacea_F_contig1031:27677..27994-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1031.444.1 ID=mRNA_D-herbacea_F_contig1031.444.1|Name=mRNA_D-herbacea_F_contig1031.444.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=318bp|location=Sequence derived from alignment at D-herbacea_F_contig1031:27677..27994- (Desmarestia herbacea DmunF female)
GTCTTCGTCGACCTCTCCGGACCGCGTCAGATTGCTTCAAAGGGTGGGGC
AAGGTACATCATGATCGTGAAGGACGATTTCTCGCGGTACGTGTGGACGT
ACTTTCTACCGCACAAGTCCGACGCCGCCCCTGCGTTCCGGCGCTTTCTT
GCCGATGCGCGTGACTATGGCACCCCGTCCATCCTCCAGTGTGTTCGATC
GGACAACGGGGGGGAATTCGCGGGGAAATCGTTCCGGGACCTCTGCGACG
AGCGCGGCGTCCGGAAGGAATTCACGACGCCGGATACGCCGAAATTCAAC
GGCGTGGCCGAGAGGGCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1031:27677..27994-

>mRNA_D-herbacea_F_contig1031.444.1 ID=mRNA_D-herbacea_F_contig1031.444.1|Name=mRNA_D-herbacea_F_contig1031.444.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=636bp|location=Sequence derived from alignment at D-herbacea_F_contig1031:27677..27994- (Desmarestia herbacea DmunF female)
GTCTTCGTCGACCTCTCCGGACCGCGTCAGATTGCTTCAAAGGGTGGGGC
AAGGTACATCATGATCGTGAAGGACGATTTCTCGCGGTACGTGTGGACGT
ACTTTCTACCGCACAAGTCCGACGCCGCCCCTGCGTTCCGGCGCTTTCTT
GCCGATGCGCGTGACTATGGCACCCCGTCCATCCTCCAGTGTGTTCGATC
GGACAACGGGGGGGAATTCGCGGGGAAATCGTTCCGGGACCTCTGCGACG
AGCGCGGCGTCCGGAAGGAATTCACGACGCCGGATACGCCGAAATTCAAC
GGCGTGGCCGAGAGGGCGGTCTTCGTCGACCTCTCCGGACCGCGTCAGAT
TGCTTCAAAGGGTGGGGCAAGGTACATCATGATCGTGAAGGACGATTTCT
CGCGGTACGTGTGGACGTACTTTCTACCGCACAAGTCCGACGCCGCCCCT
GCGTTCCGGCGCTTTCTTGCCGATGCGCGTGACTATGGCACCCCGTCCAT
CCTCCAGTGTGTTCGATCGGACAACGGGGGGGAATTCGCGGGGAAATCGT
TCCGGGACCTCTGCGACGAGCGCGGCGTCCGGAAGGAATTCACGACGCCG
GATACGCCGAAATTCAACGGCGTGGCCGAGAGGGCG
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