mRNA_D-herbacea_F_contig1028.385.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A2R4QQ66_9PHAE (Ribosomal protein S8 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ66_9PHAE) HSP 1 Score: 248 bits (634), Expect = 1.610e-83 Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
MLP IFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLP EFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS
Sbjct: 1 MLPSIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPNEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 123
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A1L2F1H4_9PHAE (Ribosomal protein S8 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H4_9PHAE) HSP 1 Score: 187 bits (475), Expect = 2.750e-59 Identity = 88/123 (71.54%), Postives = 104/123 (84.55%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
MLP IFNKL N +VYHFST+FKE+ FC ++LDLLW+EN IRGY K DGLI V+LRYYDG P+C L +VS+PRDRLY+SSLDLYRL ++FGV+VVST +GIMTSE A+RKGEGGEILAY S
Sbjct: 1 MLPKIFNKLRNSVVVYHFSTSFKEVGFCVRILDLLWRENLIRGYTK-KDGLITVMLRYYDGFPICCCLTIVSKPRDRLYLSSLDLYRLSRDFGVLVVSTPKGIMTSESAIRKGEGGEILAYAS 122
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: Q2TUH1_9PHAE (Ribosomal protein S8 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH1_9PHAE) HSP 1 Score: 184 bits (467), Expect = 4.710e-58 Identity = 84/123 (68.29%), Postives = 106/123 (86.18%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
ML I N+L NG+MVYH +F+E+SF T+VLDLLWKEN IRGY KT+DG+I VLLRYY+G P+C+RLIV+SRPRDRLY+SSLDL R+ +FGV+V+ST +GIMT+E+A+RKGEGGEILAY +
Sbjct: 1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTDDGIITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSNDFGVLVLSTPKGIMTAEDAIRKGEGGEILAYAA 123
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: V9PB06_UNDPI (Ribosomal protein S8 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PB06_UNDPI) HSP 1 Score: 183 bits (464), Expect = 1.350e-57 Identity = 79/123 (64.23%), Postives = 103/123 (83.74%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
ML I N+L NG+MVYHF +FKE+ F T+VLD+LWKEN I+GY+KTNDG+I V LRY+DG P+C RL+V+SRPRDR+Y+S LDL RL +FG++++ST +GIMT+E+ VRKGEGGE+LAY S
Sbjct: 1 MLSKIINRLRNGYMVYHFGVSFKEVRFSTKVLDILWKENLIKGYVKTNDGIITVFLRYHDGFPICTRLVVISRPRDRIYLSLLDLARLSNDFGILILSTTKGIMTNEQCVRKGEGGEVLAYAS 123
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: S4S3T6_LAMHY (Ribosomal protein S8 n=41 Tax=Laminariales TaxID=2886 RepID=S4S3T6_LAMHY) HSP 1 Score: 182 bits (461), Expect = 3.870e-57 Identity = 79/123 (64.23%), Postives = 104/123 (84.55%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
ML I N+L NG+MVYHF +FKE+ FCT+VLD+LWKEN I+GY KTN+G+I VLLRY+DG P+C RL+V+SRPRDR+Y+S LDL RL +FGV+++ST +GI+T+E+ VRKGEGGE+LAY +
Sbjct: 1 MLAKIINRLRNGYMVYHFGVSFKEVRFCTKVLDILWKENLIKGYTKTNEGVITVLLRYHDGSPICTRLVVISRPRDRIYLSLLDLARLSNDFGVLILSTPKGILTNEDCVRKGEGGEVLAYAA 123
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A4D6E512_9PHAE (Ribosomal protein S8 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E512_9PHAE) HSP 1 Score: 182 bits (461), Expect = 3.870e-57 Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYV 366
ML I NKL NG+ VYHF +FKE+ FCT++LD+LWKEN IRGY KTN+G+I V LRY+DG P+C RL+V+SRPRDR+YIS+LD+ RL +FGV+++ST +G++T EE +RKGEGGE+LAYV
Sbjct: 1 MLAKIINKLRNGYTVYHFGVSFKEVRFCTKILDILWKENLIRGYTKTNEGVITVFLRYHDGSPICTRLVVISRPRDRIYISALDITRLSNDFGVLILSTTKGVVTHEECIRKGEGGEVLAYV 122
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A516ICG1_9PHAE (Ribosomal protein S8 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICG1_9PHAE) HSP 1 Score: 181 bits (459), Expect = 7.800e-57 Identity = 80/123 (65.04%), Postives = 102/123 (82.93%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
ML I N+L NG+MVYHF +FKE+ FC +VLD+LWKEN I+GY KT DG+I V LRYY+G P+C RL+V+SRPRDR+YIS LDL RL EFGV+++ST +GIMT+++ +RKGEGGEILAYV+
Sbjct: 1 MLSKIINRLRNGYMVYHFGVSFKEVRFCIKVLDILWKENLIKGYTKTKDGVITVFLRYYNGFPICTRLVVISRPRDRIYISLLDLARLSNEFGVLILSTSQGIMTNKQCIRKGEGGEILAYVA 123
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A4D6E4Q2_9PHAE (Ribosomal protein S8 n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4Q2_9PHAE) HSP 1 Score: 179 bits (453), Expect = 6.400e-56 Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
ML I N+L NG+MVYH +FKE+ FC +VLD+LWKEN IRGY KTN+G+I V LRY+DG P+C RLIV+SRPRDR+YIS+LD+ RL +FGV+++ST +GIMT E+ +RKGEGGE+LAY +
Sbjct: 1 MLAKIINRLRNGYMVYHLGVSFKEVRFCAKVLDILWKENLIRGYKKTNEGIITVFLRYHDGSPICTRLIVISRPRDRIYISALDISRLSNDFGVLILSTTKGIMTHEQCIRKGEGGEVLAYAA 123
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A8F0JZR1_9PHAE (Ribosomal protein S8 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZR1_9PHAE) HSP 1 Score: 178 bits (452), Expect = 9.090e-56 Identity = 80/122 (65.57%), Postives = 103/122 (84.43%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYV 366
ML I N+L NG++VYH +FK++ FCT+VLD+LWKE I+GY KTN+G+I V LRY +GLP+C RL+V+SRPRDRLY+S LDL R+ K+FGV+++ST +GIMTS+EAVRKGEGGEILAYV
Sbjct: 1 MLAKIINRLRNGYLVYHLGVSFKDVRFCTKVLDILWKERLIKGYTKTNEGVITVFLRYDEGLPICTRLVVLSRPRDRLYLSLLDLSRVSKDFGVLILSTPKGIMTSQEAVRKGEGGEILAYV 122
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A8F0FCP5_9PHAE (Ribosomal protein S8 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FCP5_9PHAE) HSP 1 Score: 177 bits (448), Expect = 3.700e-55 Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYV 366
ML I N+L NG+MVY F +FKE+ FCT VLD+LWKEN I+GY KTN+G I VLLRYY+G P+C RL+V+SRPRDR+Y+S LD+ R+ FGV+++ST +GIMT+E +RKGEGGE+LAYV
Sbjct: 1 MLAKIINRLRNGYMVYQFGVSFKEVRFCTNVLDILWKENLIKGYTKTNEGFITVLLRYYNGSPVCTRLVVISRPRDRIYLSLLDISRVSNNFGVLILSTTKGIMTNEHCIRKGEGGEVLAYV 122 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1028.385.1 >prot_D-herbacea_F_contig1028.385.1 ID=prot_D-herbacea_F_contig1028.385.1|Name=mRNA_D-herbacea_F_contig1028.385.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=124bp MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGback to top mRNA from alignment at D-herbacea_F_contig1028:84051..84422- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1028.385.1 ID=mRNA_D-herbacea_F_contig1028.385.1|Name=mRNA_D-herbacea_F_contig1028.385.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=372bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:84051..84422- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:84051..84422- >mRNA_D-herbacea_F_contig1028.385.1 ID=mRNA_D-herbacea_F_contig1028.385.1|Name=mRNA_D-herbacea_F_contig1028.385.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=744bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:84051..84422- (Desmarestia herbacea DmunF female)back to top |