mRNA_D-herbacea_F_contig1028.385.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.385.1
Unique NamemRNA_D-herbacea_F_contig1028.385.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A2R4QQ66_9PHAE (Ribosomal protein S8 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ66_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 1.610e-83
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
            MLP IFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLP EFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS
Sbjct:    1 MLPSIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPNEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 123          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A1L2F1H4_9PHAE (Ribosomal protein S8 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H4_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.750e-59
Identity = 88/123 (71.54%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
            MLP IFNKL N  +VYHFST+FKE+ FC ++LDLLW+EN IRGY K  DGLI V+LRYYDG P+C  L +VS+PRDRLY+SSLDLYRL ++FGV+VVST +GIMTSE A+RKGEGGEILAY S
Sbjct:    1 MLPKIFNKLRNSVVVYHFSTSFKEVGFCVRILDLLWRENLIRGYTK-KDGLITVMLRYYDGFPICCCLTIVSKPRDRLYLSSLDLYRLSRDFGVLVVSTPKGIMTSESAIRKGEGGEILAYAS 122          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: Q2TUH1_9PHAE (Ribosomal protein S8 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH1_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 4.710e-58
Identity = 84/123 (68.29%), Postives = 106/123 (86.18%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
            ML  I N+L NG+MVYH   +F+E+SF T+VLDLLWKEN IRGY KT+DG+I VLLRYY+G P+C+RLIV+SRPRDRLY+SSLDL R+  +FGV+V+ST +GIMT+E+A+RKGEGGEILAY +
Sbjct:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTDDGIITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSNDFGVLVLSTPKGIMTAEDAIRKGEGGEILAYAA 123          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: V9PB06_UNDPI (Ribosomal protein S8 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PB06_UNDPI)

HSP 1 Score: 183 bits (464), Expect = 1.350e-57
Identity = 79/123 (64.23%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
            ML  I N+L NG+MVYHF  +FKE+ F T+VLD+LWKEN I+GY+KTNDG+I V LRY+DG P+C RL+V+SRPRDR+Y+S LDL RL  +FG++++ST +GIMT+E+ VRKGEGGE+LAY S
Sbjct:    1 MLSKIINRLRNGYMVYHFGVSFKEVRFSTKVLDILWKENLIKGYVKTNDGIITVFLRYHDGFPICTRLVVISRPRDRIYLSLLDLARLSNDFGILILSTTKGIMTNEQCVRKGEGGEVLAYAS 123          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: S4S3T6_LAMHY (Ribosomal protein S8 n=41 Tax=Laminariales TaxID=2886 RepID=S4S3T6_LAMHY)

HSP 1 Score: 182 bits (461), Expect = 3.870e-57
Identity = 79/123 (64.23%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
            ML  I N+L NG+MVYHF  +FKE+ FCT+VLD+LWKEN I+GY KTN+G+I VLLRY+DG P+C RL+V+SRPRDR+Y+S LDL RL  +FGV+++ST +GI+T+E+ VRKGEGGE+LAY +
Sbjct:    1 MLAKIINRLRNGYMVYHFGVSFKEVRFCTKVLDILWKENLIKGYTKTNEGVITVLLRYHDGSPICTRLVVISRPRDRIYLSLLDLARLSNDFGVLILSTPKGILTNEDCVRKGEGGEVLAYAA 123          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A4D6E512_9PHAE (Ribosomal protein S8 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E512_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 3.870e-57
Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYV 366
            ML  I NKL NG+ VYHF  +FKE+ FCT++LD+LWKEN IRGY KTN+G+I V LRY+DG P+C RL+V+SRPRDR+YIS+LD+ RL  +FGV+++ST +G++T EE +RKGEGGE+LAYV
Sbjct:    1 MLAKIINKLRNGYTVYHFGVSFKEVRFCTKILDILWKENLIRGYTKTNEGVITVFLRYHDGSPICTRLVVISRPRDRIYISALDITRLSNDFGVLILSTTKGVVTHEECIRKGEGGEVLAYV 122          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A516ICG1_9PHAE (Ribosomal protein S8 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICG1_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 7.800e-57
Identity = 80/123 (65.04%), Postives = 102/123 (82.93%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
            ML  I N+L NG+MVYHF  +FKE+ FC +VLD+LWKEN I+GY KT DG+I V LRYY+G P+C RL+V+SRPRDR+YIS LDL RL  EFGV+++ST +GIMT+++ +RKGEGGEILAYV+
Sbjct:    1 MLSKIINRLRNGYMVYHFGVSFKEVRFCIKVLDILWKENLIKGYTKTKDGVITVFLRYYNGFPICTRLVVISRPRDRIYISLLDLARLSNEFGVLILSTSQGIMTNKQCIRKGEGGEILAYVA 123          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A4D6E4Q2_9PHAE (Ribosomal protein S8 n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4Q2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 6.400e-56
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYVS 369
            ML  I N+L NG+MVYH   +FKE+ FC +VLD+LWKEN IRGY KTN+G+I V LRY+DG P+C RLIV+SRPRDR+YIS+LD+ RL  +FGV+++ST +GIMT E+ +RKGEGGE+LAY +
Sbjct:    1 MLAKIINRLRNGYMVYHLGVSFKEVRFCAKVLDILWKENLIRGYKKTNEGIITVFLRYHDGSPICTRLIVISRPRDRIYISALDISRLSNDFGVLILSTTKGIMTHEQCIRKGEGGEVLAYAA 123          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A8F0JZR1_9PHAE (Ribosomal protein S8 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZR1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 9.090e-56
Identity = 80/122 (65.57%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYV 366
            ML  I N+L NG++VYH   +FK++ FCT+VLD+LWKE  I+GY KTN+G+I V LRY +GLP+C RL+V+SRPRDRLY+S LDL R+ K+FGV+++ST +GIMTS+EAVRKGEGGEILAYV
Sbjct:    1 MLAKIINRLRNGYLVYHLGVSFKDVRFCTKVLDILWKERLIKGYTKTNEGVITVFLRYDEGLPICTRLVVLSRPRDRLYLSLLDLSRVSKDFGVLILSTPKGIMTSQEAVRKGEGGEILAYV 122          
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Match: A0A8F0FCP5_9PHAE (Ribosomal protein S8 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FCP5_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.700e-55
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDGLIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTRRGIMTSEEAVRKGEGGEILAYV 366
            ML  I N+L NG+MVY F  +FKE+ FCT VLD+LWKEN I+GY KTN+G I VLLRYY+G P+C RL+V+SRPRDR+Y+S LD+ R+   FGV+++ST +GIMT+E  +RKGEGGE+LAYV
Sbjct:    1 MLAKIINRLRNGYMVYQFGVSFKEVRFCTNVLDILWKENLIKGYTKTNEGFITVLLRYYNGSPVCTRLVVISRPRDRIYLSLLDISRVSNNFGVLILSTTKGIMTNEHCIRKGEGGEVLAYV 122          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ66_9PHAE1.610e-8398.37Ribosomal protein S8 n=3 Tax=Fucus TaxID=3011 RepI... [more]
A0A1L2F1H4_9PHAE2.750e-5971.54Ribosomal protein S8 n=1 Tax=Coccophora langsdorfi... [more]
Q2TUH1_9PHAE4.710e-5868.29Ribosomal protein S8 n=2 Tax=Desmarestia TaxID=313... [more]
V9PB06_UNDPI1.350e-5764.23Ribosomal protein S8 n=1 Tax=Undaria pinnatifida T... [more]
S4S3T6_LAMHY3.870e-5764.23Ribosomal protein S8 n=41 Tax=Laminariales TaxID=2... [more]
A0A4D6E512_9PHAE3.870e-5763.93Ribosomal protein S8 n=2 Tax=Laminariaceae TaxID=3... [more]
A0A516ICG1_9PHAE7.800e-5765.04Ribosomal protein S8 n=3 Tax=Lessonia TaxID=105411... [more]
A0A4D6E4Q2_9PHAE6.400e-5663.41Ribosomal protein S8 n=1 Tax=Nereocystis luetkeana... [more]
A0A8F0JZR1_9PHAE9.090e-5665.57Ribosomal protein S8 n=1 Tax=Chorda asiatica TaxID... [more]
A0A8F0FCP5_9PHAE3.700e-5563.11Ribosomal protein S8 n=2 Tax=Ecklonia TaxID=105406... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:84051..84422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue6.7e-36
Seed eggNOG ortholog2880.D7FV76
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal protein S8
EggNOG OGs2E4Z8@1,2SBTY@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927437.0562732-CDS-D-herbacea_F_contig1028:84050..844221622927437.0562732-CDS-D-herbacea_F_contig1028:84050..84422Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 84051..84422 -
1690790170.227791-CDS-D-herbacea_F_contig1028:84050..844221690790170.227791-CDS-D-herbacea_F_contig1028:84050..84422Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 84051..84422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.385.1prot_D-herbacea_F_contig1028.385.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 84051..84422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.385.1

>prot_D-herbacea_F_contig1028.385.1 ID=prot_D-herbacea_F_contig1028.385.1|Name=mRNA_D-herbacea_F_contig1028.385.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=124bp
MLPGIFNKLHNGFMVYHFSTTFKEISFCTQVLDLLWKENFIRGYIKTNDG
LIKVLLRYYDGLPMCNRLIVVSRPRDRLYISSLDLYRLPKEFGVVVVSTR
RGIMTSEEAVRKGEGGEILAYVS*
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mRNA from alignment at D-herbacea_F_contig1028:84051..84422-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.385.1 ID=mRNA_D-herbacea_F_contig1028.385.1|Name=mRNA_D-herbacea_F_contig1028.385.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=372bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:84051..84422- (Desmarestia herbacea DmunF female)
ATGCTTCCCGGCATATTTAATAAATTACATAATGGTTTTATGGTATACCA TTTTTCGACTACTTTTAAAGAAATAAGTTTTTGCACACAAGTTTTAGATC TTTTGTGGAAAGAGAATTTTATTAGAGGTTACATAAAAACAAATGATGGT TTAATCAAGGTACTTTTAAGGTATTATGATGGTTTGCCTATGTGTAATCG TTTAATTGTGGTATCTCGGCCACGTGATCGACTTTATATATCTTCTTTAG ATCTTTATCGTTTGCCTAAAGAATTCGGAGTAGTAGTGGTATCTACACGA AGAGGTATTATGACATCAGAAGAGGCCGTTCGTAAGGGGGAAGGTGGCGA GATATTAGCATACGTATCATGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:84051..84422-

>mRNA_D-herbacea_F_contig1028.385.1 ID=mRNA_D-herbacea_F_contig1028.385.1|Name=mRNA_D-herbacea_F_contig1028.385.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=744bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:84051..84422- (Desmarestia herbacea DmunF female)
ATGCTTCCCGGCATATTTAATAAATTACATAATGGTTTTATGGTATACCA
TTTTTCGACTACTTTTAAAGAAATAAGTTTTTGCACACAAGTTTTAGATC
TTTTGTGGAAAGAGAATTTTATTAGAGGTTACATAAAAACAAATGATGGT
TTAATCAAGGTACTTTTAAGGTATTATGATGGTTTGCCTATGTGTAATCG
TTTAATTGTGGTATCTCGGCCACGTGATCGACTTTATATATCTTCTTTAG
ATCTTTATCGTTTGCCTAAAGAATTCGGAGTAGTAGTGGTATCTACACGA
AGAGGTATTATGACATCAGAAGAGGCCGTTCGTAAGGGGGAAGGTGGCGA
GATATTAGCATACGTATCATGAATGCTTCCCGGCATATTTAATAAATTAC
ATAATGGTTTTATGGTATACCATTTTTCGACTACTTTTAAAGAAATAAGT
TTTTGCACACAAGTTTTAGATCTTTTGTGGAAAGAGAATTTTATTAGAGG
TTACATAAAAACAAATGATGGTTTAATCAAGGTACTTTTAAGGTATTATG
ATGGTTTGCCTATGTGTAATCGTTTAATTGTGGTATCTCGGCCACGTGAT
CGACTTTATATATCTTCTTTAGATCTTTATCGTTTGCCTAAAGAATTCGG
AGTAGTAGTGGTATCTACACGAAGAGGTATTATGACATCAGAAGAGGCCG
TTCGTAAGGGGGAAGGTGGCGAGATATTAGCATACGTATCATGA
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