mRNA_D-herbacea_F_contig1028.384.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.384.1
Unique NamemRNA_D-herbacea_F_contig1028.384.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A1L2F1J2_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1J2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.530e-27
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF
Sbjct:    6 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 62
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A344AL68_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sargassum yezoense TaxID=127449 RepID=A0A344AL68_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.570e-26
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            LT LLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF
Sbjct:    6 LTILLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 62
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A1L6KY30_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY30_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.110e-26
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            LT LLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF
Sbjct:    6 LTILLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 62
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A0U1XDI1_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=34 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDI1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.960e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            LT LLNIIDLVLPLL+AVAYFTLAERKIMAGIQRRKGPNVIGY+GLLQPLADGLKLF
Sbjct:    6 LTILLNIIDLVLPLLVAVAYFTLAERKIMAGIQRRKGPNVIGYMGLLQPLADGLKLF 62
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: E6ZEQ7_ECTSI (NADH-ubiquinone oxidoreductase chain 1 n=66 Tax=Phaeophyceae TaxID=2870 RepID=E6ZEQ7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 7.530e-25
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            LT LLNIIDLV+PLLIAVAYFTLAERKIMAGIQRR+GPNVIGY+GLLQPLADGLKLF
Sbjct:    6 LTILLNIIDLVIPLLIAVAYFTLAERKIMAGIQRRRGPNVIGYMGLLQPLADGLKLF 62
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A8E8PDM7_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.120e-23
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            LT   NIID VLPLLIAVAYFTLAERKIMAGIQRR+GPNVIGY+GLLQPLADGLKLF
Sbjct:    6 LTIFYNIIDFVLPLLIAVAYFTLAERKIMAGIQRRRGPNVIGYMGLLQPLADGLKLF 62
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A4Y5T7T0_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7T0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-22
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            L T+LNI+ LV+PLLIAVAYFTLAERKIMA IQRR+GPNVIGY+GLLQPLADGLKLF
Sbjct:    4 LLTILNILSLVVPLLIAVAYFTLAERKIMASIQRRRGPNVIGYMGLLQPLADGLKLF 60
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A1I9LW81_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW81_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.170e-22
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            L+ ++NI+D+V+PLL+AVAYFTL ERKIM GIQRRKGPNVIGY+GLLQPLADGLKLF
Sbjct:    6 LSLIINILDIVIPLLVAVAYFTLTERKIMGGIQRRKGPNVIGYMGLLQPLADGLKLF 62
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: A0A8F0FDG9_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDG9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-21
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    7 TLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            TL+NII LV+PLLI+VAYFTLAERKIM  IQRR+GPNVIGY+GLLQPLADGLKLF
Sbjct:    9 TLINIISLVVPLLISVAYFTLAERKIMGSIQRRRGPNVIGYMGLLQPLADGLKLF 63
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Match: Q2TUC9_DICDH (NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Dictyota TaxID=2875 RepID=Q2TUC9_DICDH)

HSP 1 Score: 93.2 bits (230), Expect = 2.230e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:   13 LNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLF 171
            LNI+ LV+PLLIAVAYFTLAERKIMA IQRR+GPNV+GY+GLLQPLADGLKLF
Sbjct:    6 LNILSLVVPLLIAVAYFTLAERKIMASIQRRRGPNVVGYMGLLQPLADGLKLF 58
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L2F1J2_9PHAE9.530e-27100.00NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Sar... [more]
A0A344AL68_9PHAE6.570e-2698.25NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sar... [more]
A0A1L6KY30_9PHAE7.110e-2698.25NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sar... [more]
A0A0U1XDI1_9PHAE1.960e-2594.74NADH-ubiquinone oxidoreductase chain 1 n=34 Tax=Ph... [more]
E6ZEQ7_ECTSI7.530e-2592.98NADH-ubiquinone oxidoreductase chain 1 n=66 Tax=Ph... [more]
A0A8E8PDM7_9PHAE3.120e-2389.47NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Pha... [more]
A0A4Y5T7T0_9PHAE2.200e-2285.96NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Dic... [more]
A0A1I9LW81_9PHAE3.170e-2280.70NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Ple... [more]
A0A8F0FDG9_9PHAE1.700e-2185.45NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Pro... [more]
Q2TUC9_DICDH2.230e-2186.79NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Dic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:82661..82831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.3
Seed ortholog evalue2e-14
Seed eggNOG ortholog70448.Q0P3G2
Preferred namenad1
KEGG rclassRC00061
KEGG koko:K03878
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categorysignal peptide
GOsGO:0006091,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0044237,GO:0045333,GO:0055114
EggNOG free text desc.NADH dehydrogenase
EggNOG OGs34KCT@3041,37V23@33090,COG1005@1,KOG4770@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927437.0112934-CDS-D-herbacea_F_contig1028:82660..828311622927437.0112934-CDS-D-herbacea_F_contig1028:82660..82831Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 82661..82831 -
1690790170.214804-CDS-D-herbacea_F_contig1028:82660..828311690790170.214804-CDS-D-herbacea_F_contig1028:82660..82831Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 82661..82831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.384.1prot_D-herbacea_F_contig1028.384.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 82661..82831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.384.1

>prot_D-herbacea_F_contig1028.384.1 ID=prot_D-herbacea_F_contig1028.384.1|Name=mRNA_D-herbacea_F_contig1028.384.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=57bp
LTTLLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPL
ADGLKLF
back to top

mRNA from alignment at D-herbacea_F_contig1028:82661..82831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.384.1 ID=mRNA_D-herbacea_F_contig1028.384.1|Name=mRNA_D-herbacea_F_contig1028.384.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=171bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:82661..82831- (Desmarestia herbacea DmunF female)
TTAACAACGCTATTAAATATTATTGATCTTGTACTTCCTTTACTTATTGC
GGTTGCTTATTTTACCTTAGCGGAGCGTAAAATTATGGCAGGTATTCAAA
GACGTAAGGGTCCAAATGTTATTGGTTATTTAGGTTTGCTTCAGCCGCTA
GCAGATGGTCTTAAACTTTTT
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:82661..82831-

>mRNA_D-herbacea_F_contig1028.384.1 ID=mRNA_D-herbacea_F_contig1028.384.1|Name=mRNA_D-herbacea_F_contig1028.384.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=342bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:82661..82831- (Desmarestia herbacea DmunF female)
TTAACAACGCTATTAAATATTATTGATCTTGTACTTCCTTTACTTATTGC
GGTTGCTTATTTTACCTTAGCGGAGCGTAAAATTATGGCAGGTATTCAAA
GACGTAAGGGTCCAAATGTTATTGGTTATTTAGGTTTGCTTCAGCCGCTA
GCAGATGGTCTTAAACTTTTTTTAACAACGCTATTAAATATTATTGATCT
TGTACTTCCTTTACTTATTGCGGTTGCTTATTTTACCTTAGCGGAGCGTA
AAATTATGGCAGGTATTCAAAGACGTAAGGGTCCAAATGTTATTGGTTAT
TTAGGTTTGCTTCAGCCGCTAGCAGATGGTCTTAAACTTTTT
back to top