mRNA_D-herbacea_F_contig1028.381.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.381.1
Unique NamemRNA_D-herbacea_F_contig1028.381.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A2R4QQ71_9PHAE (Ribosomal protein L16 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ71_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 1.490e-90
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 411
            MLQPKKTKYRKYFKPRILPKILAKTQKLNELNC ALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL
Sbjct:    1 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCLALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 136
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A1L2F1H6_9PHAE (RpL16 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H6_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 4.430e-65
Identity = 100/132 (75.76%), Postives = 113/132 (85.61%), Query Frame = 1 
Query:   10 QPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKIC 405
            QPKKTKYRKYFKPR LPK   KTQKL E +CFALI ++S YINGQQ+EAARQNIRRK+KREGKLEI +LTD  IS KPTAARMGKGKGK+ +WVAS+SAGKP+F LYGI  E G PAL++GANKLP K+KIC
Sbjct:    4 QPKKTKYRKYFKPRSLPKNTTKTQKLAEHSCFALISLESGYINGQQLEAARQNIRRKVKREGKLEIALLTDKAISNKPTAARMGKGKGKVKHWVASISAGKPIFFLYGIDSERGFPALKAGANKLPLKIKIC 135
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A8F0K1B0_9PHAE (Ribosomal protein L16 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K1B0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.560e-64
Identity = 100/135 (74.07%), Postives = 115/135 (85.19%), Query Frame = 1 
Query:    7 LQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 411
            +QPKKTKYRKYFKPR LP    +TQ+L ELNCFALI  +S Y+NG+QIEAARQNIRRK+KREGKLEIP+  DIPISRK +AARMGKGKGKI +WVA+L AG+ +FLLYGI  E G+PALQSGANKLP K+KI KL
Sbjct:    3 IQPKKTKYRKYFKPRRLPSNSTQTQRLGELNCFALITTESGYLNGRQIEAARQNIRRKVKREGKLEIPVFPDIPISRKASAARMGKGKGKIDHWVAALPAGRTIFLLYGIDAEQGIPALQSGANKLPLKLKIYKL 137
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A0G2RKU9_TUROR (Ribosomal protein L16 n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKU9_TUROR)

HSP 1 Score: 196 bits (498), Expect = 2.450e-62
Identity = 96/133 (72.18%), Postives = 113/133 (84.96%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKI 402
            +LQPKKTKYRKYFKPR+LPK   K +KLNE NCFALI + S +ING+Q+EAARQNIRRKIKREGKLEI +L D  IS KPT+ARMGKGKGK+H+W+A + AGKP+ LLYGI +E G PAL++GANKLP KVKI
Sbjct:    2 LLQPKKTKYRKYFKPRLLPKTTNKPKKLNEQNCFALISLASGHINGRQLEAARQNIRRKIKREGKLEIVLLPDKAISNKPTSARMGKGKGKVHHWIAPIPAGKPILLLYGIDKERGFPALKAGANKLPLKVKI 134
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A1L6KXZ3_9PHAE (Ribosomal protein L16 n=11 Tax=Sargassaceae TaxID=3014 RepID=A0A1L6KXZ3_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 9.960e-62
Identity = 94/133 (70.68%), Postives = 115/133 (86.47%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKI 402
            +LQPKKTKY+KYFKPR+LP++  KTQKLNE NCFA+I ++S YI+ +Q+EAARQNIRRKIKREGKLEI  L D  IS KPT+ARMGKGKGK+++WVA +SAGKP+ LLYGI +E G PAL++GANKLP K+KI
Sbjct:    2 LLQPKKTKYKKYFKPRLLPRVTTKTQKLNEQNCFAIISLESGYIDVRQLEAARQNIRRKIKREGKLEIIPLADKAISNKPTSARMGKGKGKVNHWVAPISAGKPILLLYGIDKEQGFPALKAGANKLPLKIKI 134
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A089N0Z2_PETFA (Ribosomal protein L16 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089N0Z2_PETFA)

HSP 1 Score: 194 bits (492), Expect = 2.010e-61
Identity = 97/136 (71.32%), Postives = 116/136 (85.29%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 411
            ++QPKKTKYRKYFKPR LPK   KTQKL ELN FALI ++S ++NG+QIEAARQNIRRK+KREGKLEI +  DI ISRK +AARMGKGKGK+ +WVA+LSAG+ +FLLYG+  E G+PAL+SGANKLP K+KI KL
Sbjct:    2 LIQPKKTKYRKYFKPRGLPKSSTKTQKLKELNYFALIAMESGFLNGKQIEAARQNIRRKVKREGKLEILVFPDIAISRKASAARMGKGKGKVDHWVAALSAGRTVFLLYGVDAEQGIPALRSGANKLPMKLKIYKL 137
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A0U2M402_9PHAE (Ribosomal protein L16 n=18 Tax=Laminariales TaxID=2886 RepID=A0A0U2M402_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.670e-61
Identity = 98/135 (72.59%), Postives = 113/135 (83.70%), Query Frame = 1 
Query:    7 LQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 411
            +QPKKTKYRKYFKPR LP    KT KL ELNCFA+I ++S Y+NG+QIEAARQNIRRK+KREGKLEI I  DI ISRK +AARMGKGKGK+ +W+AS+SAG+ LFLLYGI  E G+PAL SGANKLP KVKI +L
Sbjct:    1 MQPKKTKYRKYFKPRGLPNTSTKTHKLTELNCFAVILMESGYLNGRQIEAARQNIRRKVKREGKLEILIFPDIAISRKASAARMGKGKGKVDHWIASVSAGQNLFLLYGIDAEQGIPALHSGANKLPLKVKIYQL 135
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A3S8PYI0_9PHAE (Ribosomal protein L16 n=5 Tax=Sargassum TaxID=3015 RepID=A0A3S8PYI0_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.050e-61
Identity = 94/136 (69.12%), Postives = 114/136 (83.82%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 411
            +LQPK+TKY+KYFKPR LPKI  K QKLNE NCFA+I ++S Y+N +Q+EAARQNIRRKIKREGKLEI  L D  IS KPT+ARMGKGKGK+++W+A +  GKP+FLLYGI +E GLPAL++GANKLP K+KI  L
Sbjct:    2 LLQPKRTKYKKYFKPRSLPKITTKAQKLNEQNCFAIISLESGYLNVKQLEAARQNIRRKIKREGKLEIVPLADKTISNKPTSARMGKGKGKVNHWIAPILVGKPIFLLYGIDKEQGLPALKAGANKLPLKIKIRNL 137
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: A0A068LH27_9PHAE (Ribosomal protein L16 n=3 Tax=Sargassum TaxID=3015 RepID=A0A068LH27_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 5.750e-61
Identity = 97/136 (71.32%), Postives = 114/136 (83.82%), Query Frame = 1 
Query:    4 MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 411
            +LQPKKTKY+KYFKPR LPKI  KTQKL+E  CFA+I ++S YIN QQ+EAARQNIRRKIKREGKLEI  L D  IS KPT+ARMGKGKGK+++WVA + AGKPL LL+GI +E GLPAL++GANKLP K+KI  L
Sbjct:    2 LLQPKKTKYKKYFKPRALPKITTKTQKLSEPGCFAIISLESGYINVQQLEAARQNIRRKIKREGKLEILPLADKAISNKPTSARMGKGKGKVNHWVAPILAGKPLLLLHGINKEQGLPALKAGANKLPLKIKILDL 137
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BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Match: F8UWL8_9PHAE (Ribosomal protein L16 n=20 Tax=Saccharina TaxID=309357 RepID=F8UWL8_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 2.190e-60
Identity = 96/135 (71.11%), Postives = 112/135 (82.96%), Query Frame = 1 
Query:    7 LQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIEAARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLSAGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL 411
            +QPKKTKYRKYFKPR LP    KT KL EL CFA+I + S Y+NG+QIE+ARQNIRRK+KREGKLEI I  DI ISRK +AARMGKGKGK+ +W+AS+SAG+ LFLLYGI +E G+PAL SGANKLP KVKI +L
Sbjct:    1 MQPKKTKYRKYFKPRGLPNTSGKTHKLTELTCFAVIAMGSGYLNGRQIESARQNIRRKVKREGKLEILIFPDIAISRKASAARMGKGKGKVDHWIASISAGQTLFLLYGIDDEQGIPALHSGANKLPLKVKIYQL 135
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ71_9PHAE1.490e-9099.26Ribosomal protein L16 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A1L2F1H6_9PHAE4.430e-6575.76RpL16 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A8F0K1B0_9PHAE2.560e-6474.07Ribosomal protein L16 n=1 Tax=Analipus japonicus T... [more]
A0A0G2RKU9_TUROR2.450e-6272.18Ribosomal protein L16 n=1 Tax=Turbinaria ornata Ta... [more]
A0A1L6KXZ3_9PHAE9.960e-6270.68Ribosomal protein L16 n=11 Tax=Sargassaceae TaxID=... [more]
A0A089N0Z2_PETFA2.010e-6171.32Ribosomal protein L16 n=4 Tax=Scytosiphonaceae Tax... [more]
A0A0U2M402_9PHAE2.670e-6172.59Ribosomal protein L16 n=18 Tax=Laminariales TaxID=... [more]
A0A3S8PYI0_9PHAE4.050e-6169.12Ribosomal protein L16 n=5 Tax=Sargassum TaxID=3015... [more]
A0A068LH27_9PHAE5.750e-6171.32Ribosomal protein L16 n=3 Tax=Sargassum TaxID=3015... [more]
F8UWL8_9PHAE2.190e-6071.11Ribosomal protein L16 n=20 Tax=Saccharina TaxID=30... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:79454..79867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score111.3
Seed ortholog evalue3.6e-22
Seed eggNOG ortholog1121949.AQXT01000002_gene325
Preferred namerplP
KEGG koko:K02878
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
EggNOG OGs1RA0Z@1224,2U710@28211,43XNF@69657,COG0197@1,COG0197@2
COG Functional cat.J
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size414
Cds size411
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.8314085-UTR-D-herbacea_F_contig1028:79453..794561622927436.8314085-UTR-D-herbacea_F_contig1028:79453..79456Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 79454..79456 +
1690790170.158834-UTR-D-herbacea_F_contig1028:79453..794561690790170.158834-UTR-D-herbacea_F_contig1028:79453..79456Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 79454..79456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.8427787-CDS-D-herbacea_F_contig1028:79456..798671622927436.8427787-CDS-D-herbacea_F_contig1028:79456..79867Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 79457..79867 +
1690790170.1740031-CDS-D-herbacea_F_contig1028:79456..798671690790170.1740031-CDS-D-herbacea_F_contig1028:79456..79867Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 79457..79867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.381.1prot_D-herbacea_F_contig1028.381.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 79457..79867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.381.1

>prot_D-herbacea_F_contig1028.381.1 ID=prot_D-herbacea_F_contig1028.381.1|Name=mRNA_D-herbacea_F_contig1028.381.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=137bp
MLQPKKTKYRKYFKPRILPKILAKTQKLNELNCFALIPIQSVYINGQQIE
AARQNIRRKIKREGKLEIPILTDIPISRKPTAARMGKGKGKIHNWVASLS
AGKPLFLLYGIIEEVGLPALQSGANKLPFKVKICKL*
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mRNA from alignment at D-herbacea_F_contig1028:79454..79867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.381.1 ID=mRNA_D-herbacea_F_contig1028.381.1|Name=mRNA_D-herbacea_F_contig1028.381.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=414bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:79454..79867+ (Desmarestia herbacea DmunF female)
TTTATGCTGCAACCAAAAAAAACAAAATATAGAAAATATTTTAAACCAAG
AATCTTGCCTAAAATTTTGGCTAAAACCCAAAAATTAAATGAACTTAATT
GCTTCGCTTTAATACCTATACAATCTGTATATATTAACGGACAACAAATA
GAAGCAGCTCGTCAAAATATAAGACGGAAAATAAAACGAGAAGGAAAATT
AGAAATTCCTATTTTAACCGACATACCAATAAGTCGCAAACCGACAGCAG
CTAGAATGGGAAAAGGTAAAGGAAAAATTCATAATTGGGTTGCCTCTTTA
TCCGCAGGAAAACCCCTGTTTCTACTTTACGGTATAATTGAAGAAGTTGG
TCTTCCAGCTCTTCAATCTGGCGCCAACAAGTTACCTTTTAAGGTTAAAA
TTTGTAAACTATAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:79454..79867+

>mRNA_D-herbacea_F_contig1028.381.1 ID=mRNA_D-herbacea_F_contig1028.381.1|Name=mRNA_D-herbacea_F_contig1028.381.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=822bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:79454..79867+ (Desmarestia herbacea DmunF female)
ATGCTGCAACCAAAAAAAACAAAATATAGAAAATATTTTAAACCAAGAAT
CTTGCCTAAAATTTTGGCTAAAACCCAAAAATTAAATGAACTTAATTGCT
TCGCTTTAATACCTATACAATCTGTATATATTAACGGACAACAAATAGAA
GCAGCTCGTCAAAATATAAGACGGAAAATAAAACGAGAAGGAAAATTAGA
AATTCCTATTTTAACCGACATACCAATAAGTCGCAAACCGACAGCAGCTA
GAATGGGAAAAGGTAAAGGAAAAATTCATAATTGGGTTGCCTCTTTATCC
GCAGGAAAACCCCTGTTTCTACTTTACGGTATAATTGAAGAAGTTGGTCT
TCCAGCTCTTCAATCTGGCGCCAACAAGTTACCTTTTAAGGTTAAAATTT
GTAAACTATAAATGCTGCAACCAAAAAAAACAAAATATAGAAAATATTTT
AAACCAAGAATCTTGCCTAAAATTTTGGCTAAAACCCAAAAATTAAATGA
ACTTAATTGCTTCGCTTTAATACCTATACAATCTGTATATATTAACGGAC
AACAAATAGAAGCAGCTCGTCAAAATATAAGACGGAAAATAAAACGAGAA
GGAAAATTAGAAATTCCTATTTTAACCGACATACCAATAAGTCGCAAACC
GACAGCAGCTAGAATGGGAAAAGGTAAAGGAAAAATTCATAATTGGGTTG
CCTCTTTATCCGCAGGAAAACCCCTGTTTCTACTTTACGGTATAATTGAA
GAAGTTGGTCTTCCAGCTCTTCAATCTGGCGCCAACAAGTTACCTTTTAA
GGTTAAAATTTGTAAACTATAA
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