mRNA_D-herbacea_F_contig102.349.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.349.1
Unique NamemRNA_D-herbacea_F_contig102.349.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:377791..379384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.5824537-CDS-D-herbacea_F_contig102:377791..3778831622927430.5824537-CDS-D-herbacea_F_contig102:377791..377883Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 377792..377883 -
1690790166.2567756-CDS-D-herbacea_F_contig102:377791..3778831690790166.2567756-CDS-D-herbacea_F_contig102:377791..377883Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 377792..377883 -
1622927430.5917244-CDS-D-herbacea_F_contig102:379233..3793841622927430.5917244-CDS-D-herbacea_F_contig102:379233..379384Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 379234..379384 -
1690790166.2690847-CDS-D-herbacea_F_contig102:379233..3793841690790166.2690847-CDS-D-herbacea_F_contig102:379233..379384Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 379234..379384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.349.1prot_D-herbacea_F_contig102.349.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 377792..379384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.349.1

>prot_D-herbacea_F_contig102.349.1 ID=prot_D-herbacea_F_contig102.349.1|Name=mRNA_D-herbacea_F_contig102.349.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=81bp
AAVATTTTAEVAAVAEEVPRVTSRLPWRGTEPPGPFPLAVPAFRQTCTAV
GRESRTATWLIVTRCHVERVSATWATPATST
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mRNA from alignment at D-herbacea_F_contig102:377791..379384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.349.1 ID=mRNA_D-herbacea_F_contig102.349.1|Name=mRNA_D-herbacea_F_contig102.349.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1594bp|location=Sequence derived from alignment at D-herbacea_F_contig102:377791..379384- (Desmarestia herbacea DmunF female)
GCAGCGGTAGCCACAACAACAACGGCAGAAGTGGCAGCGGTGGCGGAGGA
GGTGCCAAGGGTTACCTCTCGTCTACCCTGGCGAGGAACAGAGCCTCCGG
GTCCTTTTCCTCTGGCCGTCCCGGCCTTTCGACAAACTTGTACCGCAGTC
GGTGAGGGGGAAACGTTTTAATTGTTATCGCGATAGCACTGCTACTGCGA
AACGTGCCAGGATTTTATGATTCGTCGCCGTCTATGTCGTTCGGTGTTGT
GGCCCTAGGGTAGTCAACAATATGAGTCTTCCAAGATGAAGGGTAAGTAC
CGCACTACGCTGCGGTGTCCTATTCATATGATAGGCAGTCTTTAGATGCT
CTCGACCGAATGTGAGCGATTCGTTCTGTGGCTGTTCGCTGTTACGCGAG
AGATTTTGTGCCGCTCAATTGATCAAAGTAGCACAGGGTAAGCGTGGGTT
CTCTTCCAGGAATTATGAGGTTGGCCCTTGTGGCTAGCTTAAGGGGACGG
TGCGCTTTTCTGTGGGGTCTTGGCTAGTGTGAACAGGGCGGGGATTTACT
TCAGTCTCCTGTGTGCACTGCACTGAGTCACAGTTGCCCGGGTTGTCGTG
TACATTACCTGAGAGTTGTGTGCGGGGCTGGCTTGTCAATTTGTACTACG
AAAAAGCGTGATCGCCCTACGCCAATAGCAGGGAACTTGCGTGGCAGTCG
GCGGAAAGAAAGCTACGCGTACCTGCGCCACGGTTATTGATACTCTGGTA
CGGCTGACCTCGTAAAATTGGTATGGTACGAGTTATTTGCACAGTTTTCA
AGGTATATTATCACGCCGAAAGGGTTCATTTGCTTCATCTTTGCCTACAG
TATGATACACCACTCGACTAAAATATGGTTGTGGTACACGTAACTTAACA
GTACACAAGAGCTGTCGTTTCCGAGATGCTACAGCGGCAAAAAAGATGTG
TCGTTCTTGCGCTCGACTGACATAAAACACCCTTTGCTGTTGCCATTACT
GAACACGTTTCGTGCCGACTCAAGGGGTGTGGCGCACCGCAGGAGTCGAG
TTAGAACACCAGTTACCGAAACACTGCACTGAATTTTGCCTTGGTCGTTC
TCAGGTGCCATCTGACAGAAGAAAATATGCGATAGCAACAGTCAGTGACA
TGGGTCCTCGTTTTCTAGAATACTAGCTCTATGATCAAAGGGTACTCGCG
AGTACCCGGGAGTCAGTGAAATGATCGTCGTTTTCTAGGATGTTAGCTCT
ACGATCAAGGGTACTCGTTATTTCTCCCTGGCACCCCGGGGGTGGCAACT
CCGTATGGTACCGCCAACAAACGGTTTGCTTGGCAGTCATTTCTCGGTCA
GCGAAGTATCACATAGTAGTTGGGAAAAGCTATGTGGGCATGCATGCTGT
ATGGAGGCGCGTCCGCTAAAGTTGCCTCGCTAAAATACATGCATGGGTCG
TCTGTTTCATGTTTCACGTGGCTGGTGTTCGTCGCGTTCACCTGTGTGCA
GGCAGGGAATCACGGACCGCTACATGGTTGATCGTGACTCGTTGTCACGT
AGAGAGGGTTTCCGCAACATGGGCAACACCTGCTACATCAACGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:377791..379384-

>mRNA_D-herbacea_F_contig102.349.1 ID=mRNA_D-herbacea_F_contig102.349.1|Name=mRNA_D-herbacea_F_contig102.349.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=486bp|location=Sequence derived from alignment at D-herbacea_F_contig102:377791..379384- (Desmarestia herbacea DmunF female)
GCAGCGGTAGCCACAACAACAACGGCAGAAGTGGCAGCGGTGGCGGAGGA
GGTGCCAAGGGTTACCTCTCGTCTACCCTGGCGAGGAACAGAGCCTCCGG
GTCCTTTTCCTCTGGCCGTCCCGGCCTTTCGACAAACTTGTACCGCAGTC
GGCAGCGGTAGCCACAACAACAACGGCAGAAGTGGCAGCGGTGGCGGAGG
AGGTGCCAAGGGTTACCTCTCGTCTACCCTGGCGAGGAACAGAGCCTCCG
GGTCCTTTTCCTCTGGCCGTCCCGGCCTTTCGACAAACTTGTACCGCAGT
CGGCAGGGAATCACGGACCGCTACATGGTTGATCGTGACTCGTTGTCACG
TAGAGAGGGTTTCCGCAACATGGGCAACACCTGCTACATCAACGGCAGGG
AATCACGGACCGCTACATGGTTGATCGTGACTCGTTGTCACGTAGAGAGG
GTTTCCGCAACATGGGCAACACCTGCTACATCAACG
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