mRNA_D-herbacea_F_contig102.348.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.348.1
Unique NamemRNA_D-herbacea_F_contig102.348.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig102.348.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.700e-17
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   34 SGLGILLDGFFRSAELNLRCERCDHDRVRAEYALAELPGTLILHIKRFKPVVMPP 198
            S LG LLD FF+ +EL+LRCERC HDRVRAE++LAELPG L+LHIKRFKPV   P
Sbjct:  809 SELGDLLDNFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHIKRFKPVASAP 863
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BLAST of mRNA_D-herbacea_F_contig102.348.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-17
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   34 SGLGILLDGFFRSAELNLRCERCDHDRVRAEYALAELPGTLILHIKRFKP 183
            SGLG LLD FF+ +EL+LRCERC HDRVRAE++LAELPG L+LH+KRFKP
Sbjct:  711 SGLGDLLDSFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHVKRFKP 760
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUE2_9PHAE1.700e-1772.73USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2P5_ECTSI1.720e-1776.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:373021..373683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue5.2e-15
Seed eggNOG ortholog2880.D7G2P5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size389
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.5347648-CDS-D-herbacea_F_contig102:373021..3733331622927430.5347648-CDS-D-herbacea_F_contig102:373021..373333Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 373022..373333 -
1690790166.2269907-CDS-D-herbacea_F_contig102:373021..3733331690790166.2269907-CDS-D-herbacea_F_contig102:373021..373333Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 373022..373333 -
1622927430.5488112-CDS-D-herbacea_F_contig102:373608..3736831622927430.5488112-CDS-D-herbacea_F_contig102:373608..373683Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 373609..373683 -
1690790166.2444587-CDS-D-herbacea_F_contig102:373608..3736831690790166.2444587-CDS-D-herbacea_F_contig102:373608..373683Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 373609..373683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.348.1prot_D-herbacea_F_contig102.348.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 373022..373683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.348.1

>prot_D-herbacea_F_contig102.348.1 ID=prot_D-herbacea_F_contig102.348.1|Name=mRNA_D-herbacea_F_contig102.348.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=129bp
IPEEAEGGKDASGLGILLDGFFRSAELNLRCERCDHDRVRAEYALAELPG
TLILHIKRFKPVVMPPVIAKTSTPLGATATTPLPVVTPRLSPSGSTPRPA
ANHLAGSPSVSCATPSGEGSAGPGVAASG
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mRNA from alignment at D-herbacea_F_contig102:373021..373683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.348.1 ID=mRNA_D-herbacea_F_contig102.348.1|Name=mRNA_D-herbacea_F_contig102.348.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=663bp|location=Sequence derived from alignment at D-herbacea_F_contig102:373021..373683- (Desmarestia herbacea DmunF female)
ATCCCGGAAGAGGCCGAGGGAGGGAAGGACGCATCGGGGCTAGGCATCCT
ATTGGACGGATTCTTCCGTTCTGCGGTAAGTTAGGATGTTAGGTACGCTG
TTTTTGTAGCGCAGAAACTAAAAATGGTGCTTGTTTACTAAAACAAAAGG
CTGAAATGGTATACGTTTTCAAGCAGATGGTCCAAGGAAATAGTAACGTT
TGCAGAGAGCTCGATCTGCGTATATGCAGTAAAGATGTTTGCCCTATATG
TCTGGGTGTTGTTGTTTTTGTGGAAATGTGTGGTGTATGGAACGTGTCGG
TGTGATTTTGTGTCATCGCGACATTTTTGTGTTCATGCTGTCTGTGGCAG
GAGCTCAACCTTCGATGTGAACGTTGCGATCACGATCGAGTTCGGGCGGA
ATACGCTCTGGCGGAGCTTCCGGGGACCCTCATCCTTCACATAAAGCGCT
TCAAGCCGGTGGTCATGCCACCTGTAATCGCAAAAACTTCAACACCGTTA
GGGGCAACAGCAACCACACCTCTTCCTGTAGTAACACCCAGACTGTCGCC
ATCAGGTTCAACACCCCGCCCGGCTGCCAATCACCTTGCGGGTTCTCCAA
GTGTTTCATGCGCTACCCCAAGCGGTGAAGGGTCAGCTGGGCCGGGGGTT
GCGGCTAGTGGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:373021..373683-

>mRNA_D-herbacea_F_contig102.348.1 ID=mRNA_D-herbacea_F_contig102.348.1|Name=mRNA_D-herbacea_F_contig102.348.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=774bp|location=Sequence derived from alignment at D-herbacea_F_contig102:373021..373683- (Desmarestia herbacea DmunF female)
ATCCCGGAAGAGGCCGAGGGAGGGAAGGACGCATCGGGGCTAGGCATCCT
ATTGGACGGATTCTTCCGTTCTGCGATCCCGGAAGAGGCCGAGGGAGGGA
AGGACGCATCGGGGCTAGGCATCCTATTGGACGGATTCTTCCGTTCTGCG
GAGCTCAACCTTCGATGTGAACGTTGCGATCACGATCGAGTTCGGGCGGA
ATACGCTCTGGCGGAGCTTCCGGGGACCCTCATCCTTCACATAAAGCGCT
TCAAGCCGGTGGTCATGCCACCTGTAATCGCAAAAACTTCAACACCGTTA
GGGGCAACAGCAACCACACCTCTTCCTGTAGTAACACCCAGACTGTCGCC
ATCAGGTTCAACACCCCGCCCGGCTGCCAATCACCTTGCGGGTTCTCCAA
GTGTTTCATGCGCTACCCCAAGCGGTGAAGGGTCAGCTGGGCCGGGGGTT
GCGGCTAGTGGAGAGCTCAACCTTCGATGTGAACGTTGCGATCACGATCG
AGTTCGGGCGGAATACGCTCTGGCGGAGCTTCCGGGGACCCTCATCCTTC
ACATAAAGCGCTTCAAGCCGGTGGTCATGCCACCTGTAATCGCAAAAACT
TCAACACCGTTAGGGGCAACAGCAACCACACCTCTTCCTGTAGTAACACC
CAGACTGTCGCCATCAGGTTCAACACCCCGCCCGGCTGCCAATCACCTTG
CGGGTTCTCCAAGTGTTTCATGCGCTACCCCAAGCGGTGAAGGGTCAGCT
GGGCCGGGGGTTGCGGCTAGTGGA
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