mRNA_D-herbacea_F_contig100.248.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: D7FHY1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHY1_ECTSI) HSP 1 Score: 428 bits (1101), Expect = 2.220e-139 Identity = 236/335 (70.45%), Postives = 266/335 (79.40%), Query Frame = 3
Query: 87 MAGRSSRRGGGG-AGIQALVEQKLADGLQYEALQLYRGVVSRKSARGQDDAAMSIAEQGMGVLLGKGYADSATELGNVLVDILTDHELVPNEERVARIKRVNDMYEDAKQAAMLSNKDRPTAAGEQGSGXXXXXXXEVDGERSGDGKST-RGMHSIGTLQGRFLKLAVNWAASRGQRLSGDPELCALLGRCLWNEGDLERGTRYLVLGERPLELLDLISRDVSAGSARNLAVTKGVLQFASKASLRDANALLTAYKVSLGFGPPT-GLISFCVLLLKTCEYDAAPVFQKLLEHFRAELSVDAALFGFVETIAMVYFGIRLRPPSMLDNIMGMFGG 1082
MAGRSSR GG IQ LVEQKL +GLQYEALQLYRGVVSRKSARG D+AA++IAEQG+GVLL +GYADSATELGNVLV IL DHEL EER+ +RVN YEDAK+AA+L+ +DR TAA ++G G EV+ +GK RGM+S+G LQGRFLKLAV W A+RGQRLSGDP LC LLGRCLWNEGDLERGTRYLVLGERP EL DLI +DVS +AR LAV KGVLQFASKASLRDANALL AYK G PT G++ FC +LLKTCEYDA PVFQKLL+ ++A+LS D ALFG VE+IAM YF +RLRPPSMLDNIMGM GG
Sbjct: 1 MAGRSSRSGGNSNERIQLLVEQKLGEGLQYEALQLYRGVVSRKSARGNDNAALTIAEQGIGVLLARGYADSATELGNVLVGILNDHELPVTEERLELFRRVNAKYEDAKRAAVLAEEDRRTAA-QEGQGGVG----EVE-----EGKEAGRGMYSVGVLQGRFLKLAVAWTAARGQRLSGDPGLCGLLGRCLWNEGDLERGTRYLVLGERPQELCDLILQDVSDANARELAVAKGVLQFASKASLRDANALLAAYKTQTGGKQPTKGVLGFCAMLLKTCEYDATPVFQKLLDAYQADLSKDEALFGSVESIAMTYFNLRLRPPSMLDNIMGMLGG 325
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: A0A835ZB05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB05_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.660e-50 Identity = 135/338 (39.94%), Postives = 193/338 (57.10%), Query Frame = 3
Query: 84 SMAGRSSRRGGGGAG--IQALVEQKLADGLQYEALQLYRGVVSRKSARGQDDAAMSIAEQGMGVLLGKGYADSATELGNVLVDILTDHELVPNEERVARIKRVNDMYEDAKQAAMLSNKDRPTAAGEQGSGXXXXXXXEVDGERSGDGKSTRGMHSIGT---LQGRFLKLAVNWAASRGQRLSGDPELCALLGRCLWNEGDLERGTRYLVLGERPLELLDLISRDVSAGSARNLAVTKGVLQFASKASLRDANALLTAYKVSLGFGPPTG-LISFCVLLLKTCEYDAAPVFQKLLEHFRAELSVDAALFGFVETIAMVYFGIRLRPPSMLDNIMGMFG 1079
++AGRS+RR G GA ++A+VE+KL GL+YEALQLYRG +RK+ARG D+A ++AE G VL+ +G+ADSA+EL LV+I ++ +ER+ RI+R++ +Y++ ++NK G+ G +G ++ + H + + LQ +FLK AV W A+ G R +GD L AL GRCL+ G+ E GT +V GE+P+EL L+ GVL F + +LRDANA A++ + G F LL TCE DAAP+FQ+L E RA S D A+ + I V+F I L PPSMLD+I+ M G
Sbjct: 4 ALAGRSTRRQGNGAAERVKAMVEEKLDAGLEYEALQLYRGQAARKAARGDFDSAAAMAETGAQVLMQRGFADSASELSRQLVEIYKENGCDVTQERLDRIQRLDALYQE------VANKGPGELKGK--------------GSEAGIAQARQVRHPVQSGFELQAKFLKAAVAWTAAAGPRPAGDAALNALPGRCLFAMGNAEAGTSRMVAGEQPIELRLLMM---------------GVLHFLALGNLRDANAQRAAWEAAAAPERARGGAQQFVRLLCATCERDAAPLFQRLAEAMRA--SGDPAVEKHLAQIGRVFFSI-LPPPSMLDSILKMMG 303
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: D7G1P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P9_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.210e-34 Identity = 72/98 (73.47%), Postives = 78/98 (79.59%), Query Frame = 3
Query: 558 QGRFLKLAVNWAASRGQRLSGDPELCALLGRCLWNEGDLERGTRYLVLGERPLELLDLISRDVSAGSARNLAVTKGVLQFASKASLRDANALLTAYKV 851
QGRFLKLAV W +RGQRL D LC L+GRCLWNEG+LERGTRY VLGERP EL DLI +DVS +AR LAV KGVLQFA K SLRDANALL A K+
Sbjct: 10 QGRFLKLAVAWTTARGQRLRDDSGLCGLVGRCLWNEGELERGTRYHVLGERPQELCDLILQDVSDANARKLAVGKGVLQFARKRSLRDANALLAANKM 107
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: A0A6H5JIE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE4_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.240e-12 Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = -3
Query: 2734 AYEARVAPPSDPECIFSLATRRCEPQARCRLKFRWGDLTLSNACRLV 2874
AYEARVAPPSD EC FS TRRCEPQ CRL+FRWGDLT S+ACRL
Sbjct: 771 AYEARVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRLA 817
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: D7FHY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY4_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 4.080e-12 Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = -3
Query: 2734 AYEARVAPPSDPECIFSLATRRCEPQARCRLKFRWGDLTLSNACRLV 2874
AYE RVAPPSD EC FS TRRCEPQ CRL+FRWGDLT S+ACRL
Sbjct: 606 AYEERVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRLA 652
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: A0A2T6ZEC8_TUBBO (Uncharacterized protein n=1 Tax=Tuber borchii TaxID=42251 RepID=A0A2T6ZEC8_TUBBO) HSP 1 Score: 75.5 bits (184), Expect = 7.490e-11 Identity = 83/344 (24.13%), Postives = 132/344 (38.37%), Query Frame = 3
Query: 132 QALVEQKLADGLQYEALQLYRGVVSRKSARGQDDAAMSIAEQGMGVLLGKGYADSATELGNVLVDILTDHELVPNEERVARIKRVNDMYEDAKQAAMLSNKDRPTAAGEQGSGXXXXXXXEVDGERSGDGKSTRGMHSIGTLQGRFLKLAVNWAASRGQRLSGDPELCALLGRCLWNEGDLERGTRYLVLG-ERPLELLDLISRDVSAGSARNLA---VTKGVLQFASKASLRDANALLTAY-------------------KVSLGFGPPTGLISFCVLLLKTCEYDAAPVFQKLLEHFRAELSVDAALFGFVETIAMVYFGIRLRPPSMLDNIMG-MFGGASN 1091
+A +E+K+ +G YEA Q R V R DAA+ I G LL G S +L +LV++ + P+ AR+ Q L + + P+ RF+ + W+A G+ +GDPEL +G L E + ++LV+G + E+ + D + A + V + +LRDA LL + V + P L++F LLL C+ +F+ L H+ L +E I +YFGI++R P+ + ++MG MFGGA N
Sbjct: 10 RARLEKKIQEGAYYEAHQQLRVVSQRYIKAHNYDAAIDILCSGAEALLKAGQGGSGCDLCLMLVEVYKAGSVTPSATSRARLI----------QLISLISPEEPSRK-------------------------------------RFINEVIAWSAKHGEYPAGDPELHHFIGTLLAQEDNTYEAEKHLVVGIKESTEIFSDMLYDWYTEDEPHTAPIYAARAVFPYLLIGNLRDATRLLAMFTRKLIENSTSLAIQEVQTASVDVKVIPSLPLLNFLNLLLLACQTGGQDMFRTLKSHYSNNLKEAPHWDEALEQIGEIYFGIQVRRPASIFDMMGSMFGGAPN 306
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: A0A5J5F4B7_9PEZI (Uncharacterized protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5F4B7_9PEZI) HSP 1 Score: 73.6 bits (179), Expect = 3.170e-10 Identity = 84/345 (24.35%), Postives = 136/345 (39.42%), Query Frame = 3
Query: 132 QALVEQKLADGLQYEALQLYRGVVSRKSARGQDDAAMSIAEQGMGVLLGKGYADSATELGNVLVDILTDHELVPNEERVARIKRVNDMYEDAKQAAMLSNKDRPTAAGEQGSGXXXXXXXEVDGERSGDGKSTRGMHSIGTLQGRFLKLAVNWAASRGQRLSGDPELCALLGRCLWNEGDLERGTRYLVLGERPLELLDLISR--------DVSAGSARNLAVTKGVLQFASKASLRDANALLTAY-------------------KVSLGFGPPTGLISFCVLLLKTCEYDAAPVFQKLLEHFRAELSVDAALFGFVETIAMVYFGIRLRPPSMLDNIMG-MFGG 1082
+A +++++ +G YEA Q R V R G ++A+ I G LL G S +L +LVD+ +L P+ AR+ + M A S K RF+ A+ W A G+ +GDPEL G E ++ ++L+LG + E D+++R + +A N + + VL +LRDAN L + + P L++F LL + A VF+ L H+ ++L A +E I +YFGI++R P+ + ++MG MFGG
Sbjct: 10 RARLQKRIEEGQYYEAHQQLRVVSQRYIKIGDYNSAIEILSSGAQALLKAGQTGSGGDLCLLLVDVYRTAKLTPDAASKARLVELITMMP----AEEPSRK-------------------------------------------RFINEAIAWTAKFGEFPAGDPELHHFAGNLYAQEDEVYEAEKHLILGTK--ESADVLARMLYDWYKENPEVHTAPNY-IARAVLPCLLIGNLRDANRSLDLFIQQLIQDNSTLVVQEVQSASADVRIFPSLPLLNFLSLLRLGVQTGGADVFRNLKSHYASQLREVPAWDDALEQIGEMYFGIQIRRPTNILDMMGSMFGG 304
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: A0A0N5ARC5_9BILA (Uncharacterized protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5ARC5_9BILA) HSP 1 Score: 66.2 bits (160), Expect = 1.110e-7 Identity = 78/339 (23.01%), Postives = 140/339 (41.30%), Query Frame = 3
Query: 141 VEQKLADGLQ----YEALQLYRGVVSRKSARGQDDAAMSIAEQGMGVLLGKGYADSATELGNVLVDILTDHELVPNEERVARIKRVNDMYEDAKQAAMLSNKDRPTAAGEQGSGXXXXXXXEVDGERSGDGKSTRGMHSIGTLQGRFLKLAVNWAASRGQRL----SGDPELCALLGRCLWNEGDLERGTRYLVLGERPLE----LLDLISRDVSAGSARNLAVTKGVLQFASKASLRDANALLTAY---KVSLGFGPPTG--LISFCVLLLKTCEYDAAPVFQKLLEHFRAELSVDAALFGFVETIAMVYFGIRL--RPPSMLDNIMGMFGGASN*CG 1100
+E++++D + YEA QLYR + R S + D I G+ L+ +SA +LG + ++++T E N E + + +++ ++ K+R +QG+ D KS RFL AV W+ S ++ G +L + + LWN GD + +L + P E L+D +D G+ ++L + VLQ R A+ +L Y S+ PP L++F L+ +F +L+E + + D + +++ I VY G+ + L N++ G+S G
Sbjct: 7 LEKRISDCFENTNYYEAHQLYRTLYFRLSTHQEWDELQRILCDGILKLVEVNEHESAIDLGELYIEVMTKAETPVNSESLEKFEKLF--------TSLFPKKERNENQWKQGT----------------DQKS------------RFLAQAVKWSMSVSEKKRYKQKGHADLHGCIAKVLWNNGDYGGARNHFMLSDEPEEFAKFLVDYQQKD-GCGNEKDLFAVQAVLQLLCNRRPRTASLVLVNYCKDHPSISDKPPYNFPLLNFARYLILVIRAKKVEMFTRLIETY--DFHRDPSFTRYLDKIGQVYLGVPAPQKQSDFLGNLLKGLVGSSQTAG 306
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: A0A6U2WP65_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2WP65_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.620e-7 Identity = 79/351 (22.51%), Postives = 139/351 (39.60%), Query Frame = 3
Query: 138 LVEQKLADGLQYEALQLYRGVVSRKSARGQDDAAMSIAEQGMGVLLGKGYADSATELGNVLVDILTDHELVPNEERVARIKRVNDMYEDAKQAAMLSNKDRPTAAGEQGSGXXXXXXXEVDGERSGDGKSTRGMHSIGTLQGRFLKLAVNWAASRGQRLSGDPELCALLGRCLWNEGDLERGT-----------RYLVLGERPLELLDLISR------------DVSAGSARNLAVTKGVLQFASKASLRDANALLTAY-----------------KVSLGFGPPTGLISFCVLLLKTCEYDA--APVFQKLLEHFRAELSV---DAALFGFVETIAMVYFGIRLRPPSML 1055
L E+++ + YEALQL + V +K G A ++A +G LL K A++L ++LV++L + +++ V+R+ +++ Y A DG + + L+ +L NW++ G G L +L W +E+ T +++ L E+P +++ + A + R+ +T+ +L A+ +LRDAN LL Y K G P + F +LL+ CE D P++ L+ F+ E+ AA+ G+ I YF I+ PPSM+
Sbjct: 32 LSEEEMDEPTAYEALQLAQSQVRKKYHAGDFGGATTLAYEGSLALLKKKRVSVASQLMDLLVEVLRETHTSDSDDWVSRLVEIHNSYVSAM-----------------------------------DGLAGTEATRLHRLERDWLLKCTNWSSDLGTIKFGSNRLQEVLAEQCWTLSLVEQETEEILDLQCDAVQHMCLAEQPDKIVAWLKTLPAPTEEETRTGHTCAPAVRDALLTRSLLLLAAMENLRDANKLLRGYIDTVEERNIKELAASYTKKDDGLAPSH--VIFGCMLLRICEKDTRTGPLYSWLMRSFKREIERLYNPAAVLGYTTKIGKQYFNIQ-PPPSMM 344
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Match: A0A060TD77_BLAAD (ARAD1D48708p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060TD77_BLAAD) HSP 1 Score: 59.7 bits (143), Expect = 9.010e-6 Identity = 55/184 (29.89%), Postives = 83/184 (45.11%), Query Frame = 3
Query: 588 WAASRGQRLSGDPELCALLGRCLWNEGDLERGTRYLVLGER--PLELLDLI---SRDVSAGSARNLAVTKGVLQFASKASLRDANALLTAY-----------------KVSLGFGPPTGLISFCVLLLKTCEYDAAPVFQKLLEHFRAELSVDAALFGFVETIAMVYFGIRL-RPPSMLDNIMG 1070
WA+ GQ GDPEL +LG + +YL+LG R P L L+ S++ S L ++GVL + ++RD+ ALL + K SL P L++F LL+ +C+Y A +F +L + +L A + I YFGI R +ML ++MG
Sbjct: 113 WASQYGQYKYGDPELNHILGSIFARADEAYEAEKYLLLGTRDSPKVLAKLLFEWSQEDSNSHTLPLYASRGVLGYLCIGNIRDSKALLDEFISQCPSEWYTTVEQQGEKASLFKDYP--LMTFLQLLVLSCQYKNADMFNRLKTRYSDKLQDVQAFNVPLARIGRDYFGIEPPRQHNMLQDLMG 294 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig100.248.1 >prot_D-herbacea_F_contig100.248.1 ID=prot_D-herbacea_F_contig100.248.1|Name=mRNA_D-herbacea_F_contig100.248.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=336bp MAGRSSRRGGGGAGIQALVEQKLADGLQYEALQLYRGVVSRKSARGQDDAback to top mRNA from alignment at D-herbacea_F_contig100:775178..781833+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig100.248.1 ID=mRNA_D-herbacea_F_contig100.248.1|Name=mRNA_D-herbacea_F_contig100.248.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=6656bp|location=Sequence derived from alignment at D-herbacea_F_contig100:775178..781833+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig100:775178..781833+ >mRNA_D-herbacea_F_contig100.248.1 ID=mRNA_D-herbacea_F_contig100.248.1|Name=mRNA_D-herbacea_F_contig100.248.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2016bp|location=Sequence derived from alignment at D-herbacea_F_contig100:775178..781833+ (Desmarestia herbacea DmunF female)back to top |