mRNA_D-herbacea_F_contig100.238.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.238.1
Unique NamemRNA_D-herbacea_F_contig100.238.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig100.238.1 vs. uniprot
Match: D7FHX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX2_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.520e-25
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 3 
Query:   54 SKQQHQIPLHFDKWVVTVRGGKDLTRGDQRGGSIFSKMSPFCELSLGDQGPISTSVKPNTTQPTWDNSIEFIAPRA 281
            S  + Q+P+H DKWV+TVR GKDLTRG+      F KMSP CEL+LG QGP ST VK NTTQP WD+SIEF A  A
Sbjct:    2 SSPKRQLPMHLDKWVITVREGKDLTRGEAN--DFFRKMSPVCELTLGSQGPFSTGVKLNTTQPCWDDSIEFDAATA 75
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX2_ECTSI7.520e-2563.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:659249..664540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size290
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.238.1prot_D-herbacea_F_contig100.238.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 659293..664540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.2031078-UTR-D-herbacea_F_contig100:659248..6592921622927416.2031078-UTR-D-herbacea_F_contig100:659248..659292Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 659249..659292 +
1690790159.2163248-UTR-D-herbacea_F_contig100:659248..6592921690790159.2163248-UTR-D-herbacea_F_contig100:659248..659292Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 659249..659292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.2184699-CDS-D-herbacea_F_contig100:659292..6593401622927416.2184699-CDS-D-herbacea_F_contig100:659292..659340Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 659293..659340 +
1690790159.230812-CDS-D-herbacea_F_contig100:659292..6593401690790159.230812-CDS-D-herbacea_F_contig100:659292..659340Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 659293..659340 +
1622927416.2347288-CDS-D-herbacea_F_contig100:659997..6600241622927416.2347288-CDS-D-herbacea_F_contig100:659997..660024Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 659998..660024 +
1690790159.2410352-CDS-D-herbacea_F_contig100:659997..6600241690790159.2410352-CDS-D-herbacea_F_contig100:659997..660024Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 659998..660024 +
1622927416.2486603-CDS-D-herbacea_F_contig100:664369..6645401622927416.2486603-CDS-D-herbacea_F_contig100:664369..664540Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 664370..664540 +
1690790159.2498143-CDS-D-herbacea_F_contig100:664369..6645401690790159.2498143-CDS-D-herbacea_F_contig100:664369..664540Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 664370..664540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.238.1

>prot_D-herbacea_F_contig100.238.1 ID=prot_D-herbacea_F_contig100.238.1|Name=mRNA_D-herbacea_F_contig100.238.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=82bp
MTSSKQQHQIPLHFDKWVVTVRGGKDLTRGDQRGGSIFSKMSPFCELSLG
DQGPISTSVKPNTTQPTWDNSIEFIAPRAPVP
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mRNA from alignment at D-herbacea_F_contig100:659249..664540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.238.1 ID=mRNA_D-herbacea_F_contig100.238.1|Name=mRNA_D-herbacea_F_contig100.238.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5292bp|location=Sequence derived from alignment at D-herbacea_F_contig100:659249..664540+ (Desmarestia herbacea DmunF female)
CACTCATGGATCCCCGTAGCCTTGGGGTGAGATAGCGAGAGAGCATGACA
TCATCCAAGCAGCAACACCAGATTCCTCTCCATTTCGACAAGGTGATGAC
GGATTATTTATGGCCTTCATGCTTAGTTCTAAGTCCGTACGCGTGCAACA
GTCAGTAGTAGTACATTGGTTCTGTCACGCATGCGGCTTTTTTTCGTTTT
TTTGAAAAAATGGAAATATGTCGTATTTCAAACGCAGTTCTCGCCTCTCG
TCTCTGGCCTACAGCAGCGTCGGAGATCCATCACGTTGTGACAGCGACGC
CCAAGACGGCTATTTCACTGCCAGACGGCAATCCGAATTCAATGCTATCG
GCTATGGGTGGTATTTCCAAAAAGCTGAAAGAAAGACTTCGTGTCGTCGC
TTCCGTGTGTGTTTTTTGTTTTGGAAGTACAGCAATTACTGCCACGCAGC
TATACTCGTAGTACAACTTGCTATCGTACCAGAGAAATAGTGGTCTCTTC
ACCTGCTGTGCTATCTATATTAGCATGTAGCAGTCAATTTTCAGGCGCTT
GTCAATGTTGTCGTTGCTCATATCAACTCTCAGCATTTGTTCCTCGCGCG
CAAGCATCAATTCGCCGCCAGCCAGGGTGCTAAAGTGCCTCCTTCGCCTT
TTTATTTCCCCCCTGTTCGTGTGCGTTCCTATCTGGCTGGCTGATTGCGC
TGTTATCTGTGCGCATATCATCATCGTCATCATCGTGAATGATCATCAGT
GGGTCGTGACCGTTAGAGGAGGGAAGGTTAGTATTAAAGTGGCAGTTGGC
GTGTGTGTATTGCATTGATTCACACATTAGCTCATCGTCCTAGATCTAGC
CCGTGGTCACACAAGTGCTGAGCCCTATGTAGGAAGATCCGGAAAACAGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCCGTCCCATTTATTATCTTG
GCTCTATTCTTTCTCTAGCTCCATCTCTCTTCGTAACTCAGACCCGGGGG
CACATAGTAGGCGCTCTCCTCCCTCCTTCCCACTACGTTACGTGCCTACA
TTTTTATCGCGAGAAGAGTGCAGCACTTTCTTCCCGCGTCGACTTTCATC
GAATTGTGTGTTGTTTGCTGTATTTCCGTGTATTCATCTTATCTTCATGA
CACGAGTACTGTATAGAGTATAGACTACGAGAGCTGCAGACTATAGAGCA
TAGAGCACAACATGTCAGGTCGACGACACCGTACCGTCACATGATACGAA
GTATATTTTTATTTTTTTTCATCACGAAGACATCAGCCGTGACGTTCCAA
ACTGGTTCGGGGGCCAGGGGATAATCGTCAACCTCACTGTGTGATACATC
GGTCGCGCGGATTCTATCGGTCCTCAGATAAATTATAACGCAGTGGCTCC
CCTGGGCTGTGGGGTGTCCCATTCTCTATGTATTATTCATAGCATCCCAG
TACAACAGAGTGCGACACTGCTGTTACTACTACTGATGTAGACTTGACTA
CTTCTATAACAGTACTCGTACTCTGTCATAGGAGTATACCTGGTCTTCCG
TTCCCCTCGTTGCCTCGGCAAGGCCTGCTGTTCGGCATGGCCCATAGTGC
AGGGGGTAGGTCTTTCTGGCGGGTGTAAGGCCGGATTCACCCTCAAGGAG
TGATACCTTCTTGCTGCTGCCTTGTGGTCGCTTGCCCAGGCGTAGCGGTA
GAGTTGGGTCGAATTGGTGCGTCAGGCACAAACGTGCGGATCTGCGGGCC
TTCTGGCAACAGCGGCAGTACAGTAATGTGCATCCAGGAAATCGTTTGTG
CGCGGAGGCAGGCGCCACCATAGGCTGAAAGACGGCACGGTCTGGGATGC
AGAGAGGGAGCTATACCGTCTAGAAGCCGGATTCGCCGCCAAAGTGGGAG
GGAGACGAGCGGCGACGAACGGGGAAGAGCGTGGTTGAACTCACCCTGAG
CGTGAACTTTTTTTCATAAGACCAGAACCTCAAGTGCATGGAGGAGCTAC
GCGTAGCTGAGAAAGGAACCGGCTGGAAAGGAGCAACAACAAAGCATGTG
TCCGGAGCAGGTCGAGATTGATGGTGCTGGGGGTTACCATGGAATGGGTC
GAGGTTGACGGTGCATGGGGTGGCCATGGGCGACATCAGCAGCAGCACAC
GGGCAAGATCGGCACCGCGACGGCGCGCATCATGGCTGTCGCAATAATTT
CGTTTTTCTGTGGACCTCTTCGGAGAGGTACTTGTTTCTTTTGTTACTGG
TTTGTAGAGAGATGCGGTAGAAATGCCTGTGTTATCTCCGTAGCCTACTT
AGTTGTTGCCTGCGTTGTACCCTTTATTGTGGAACGACCCCTTGCAATAT
CAGTAACGTGGATACTATGTGCCTACCATAGACGGCTCGGGAAAGACCTG
GTGATTGTCGATTACTTTGGAGGCTTTGGCTGGCGTTTTGTTTTCACTGC
ATTGCCCACGGGTCGTCATTCTGACAGCACTTCAGACGACAGTAAAATTG
TGTTGTATCCCCTTTGTCTTGTTTTTATTTCCGGACTACCACCATACCGT
GTTTCGTGTATACGGTGCAGGCAGCACTCCAGACAGCAACTGCTGTAGCC
AGCAGGCACGAGTTCGTTAGTAGTGGGAACGGGGGGAGAACACGGTGGGT
GTCGTAGTCGAATTGATACCTGCGGTAGTGTTAGTAGATCAGTTTACACA
TCGCCCAGTATGAGTTGGTGTACCTATTCGGTCCTGTGTACCCCTTCTTT
TTGCTATATTTTTTTCTGTGTTTTCCGGATCTTTCTACATAGGGCTCAGC
ACTTTTGTGACCACGGGCTAGATCTTGGACGATGAGCTAATGTGATGAAT
CAATACAAAAAAAAAAAAAAATACCTGGTGTATCATACTTCGTATTGCTT
TTTCTATCTAGTTTATCATGCGAGAGGCGTATTGTCCCGCAGAGGAACGT
GCAAGAGAAGAAGTATTTTTATTTTGCTTTATTTATTTAGAGCTAATTTA
TCATTTTTTTTCTGTCTTCGTTCTGCCTCCGTTTGTCCTGTGGCATGTTT
TGCTCGCTTCTTCATTGTTTCTTCCCATCGTTTTTCTTTCTGTTCTTCTC
TCTTTTTTATATGTTTTTTGCGATTTGTTTGATAAATTTATGTTAGCCTG
TGACCACGGAGTTTCGTGTCTTTCTAGGATGGAAGATCCAGTACTGGTAC
AGACTCTGAGCACGCTACTGGATGTCGTAGGGTGGAATGGGCGACTTTTA
ATGTGAACACATCAAAAACAACAACATATCGTTATGATCGTATAACGTGA
TACTTCGTACTATCATAGAGTAGTATCACACAACTTACACTACTACTACT
GTACTGTTGCGGTAATAGTACAACAACAGTAGTAGTAGTAGTAGTACTGT
ATATTACAATAGTAGTACGTAGTGGTGGTGGAGTTGACGTATGATATTAA
TATTCGTAGTATTGATAGGTTTATCGTTTTTTTGTAGGACGGATATTTGG
CGAGGGTTTGACTCCCTATTACTACAGTGTGTTTCTTAAGGTTAGTGATG
GAATTTTTTCTGAACTGCTGAACAGCCCACGCTGTCACTATTAATATCTA
TAATCATACATGTAATAAAAATGAAGATTCTCGCAAGACAAAACCGCTCA
GGTAAGGTGCGGCCCAATTGACGATTATCCTCCTCTGCTATCCCAACCGG
AACCAGTTTAGAACGTCACCGCACGACGCTTGATGTTTGCCGTTAAAAAT
CCAACGTATGTTCCAAGAGCTATTTTGTCGTTTTTCATCAAGTACAACAC
GACAGTCCTAGTACAGCACGTAGTCCACTTTTTTTGCAGGGCCTTCCGCA
GGCCGGAGTCGCGACAGCACCCGGCCCGGCCCATGAGATTTCCAGATCAC
CAGAGCCGGCCCAGCTTCCGCGCGTGACATTTTTCAGATCTCTTCACACC
TGGCCCGGCCCGTATAAATAGACCTTCTAGGCAAACCCGGCTCGGCCCAT
CGGAACAAATTTCACGGGCCCAACCCGCACATTCAGGTTCACATACAAGC
CAGGTCGCCATGACCCGTGTATGAGAACACACGGATCCATGACAAGAAAC
CCATGGTGGGTCACCGTACGAAAGTGCACGGGTTCGGCCGCTGGAACTGT
TGTGTGTATGATAGATATTTTGAACTCTCTGGTGCGTTTTCGGGGTAATA
TTAAGGCTATTTTTGTTTTCGTTTTTTTTATTATTTACAGAGGCCCATTA
TAAATAGGCACAAAAGAAGGAGGAGCAGCGGGAGCGCAAGTATCCTACCC
CCCCCCCAGAATGAAAATACAGCATCGTCGTTAACTGTACTGTTGCCGCC
GCATGGTAAAAACGAATGAGATCCGGGATTCACGCGGTGTCTGTCTCGCA
ATACACGCGTCAATATCGGCGTTTTGGGTCTATTTATTAAGGGCCCTCGT
GATAGTGCTCTTGTTTTTGTTCTTGTTTTTCGCGGGGATTTTTTTTCGGG
GAGGGCGGGGGGATCCACAACCACAGAACCACGTCGACCTGCACTCGGGA
GACACACTTCGTGTCACCAGTGTCTGCTCGCGATCATAACGTAATGCCAT
AGTAACATGCCCTCACTTGATCGAATTTGCGTCTATCATGGGTGGGCAGA
ACACGATGCGGTTGAAACCGCGCCGAAAAAAATACACAAATACCTGGGGA
ATCAAAGGTTCGGCTCGGGGAAAGCCCTGAGCGCCCTTGTTTTGTTTTCA
CGCTCTTCCTTCCCCTACCTTTATGGCCGTGTAGTGATAGCGTTTAGTAA
GTGGGCGACATAAATCAATACGGCATTTACCGTTGTTGGGATCTACCCAA
AGCGGTTCATCGCACCGTACGAGTAGTTTTTTTTTTTCCCGTGGCGGATG
GGTTAAAAAACAAAAACAAAAACAAAGTTTAAAGCTTCACCTCACAAACG
TCCATGGTTTTCTTATTTGAAGAGGTTTTAAGGTTCTCTTTTTTTTTTTT
TTTTTTTTTCAAGCTTTTTTTGATGGCCCTGTCGATTGGCGCCTTGTGTA
GCACATACGTCTTGGTCAACCCCCCCCCCCTCTCCCGTCCCTCTACCTCT
CTCGACTATTCTAACACCCAGGATTTGACGCGAGGAGACCAGCGAGGCGG
GTCTATATTCTCGAAGATGAGTCCCTTCTGTGAGCTATCCCTTGGAGACC
AAGGTCCCATATCGACCAGTGTCAAGCCCAACACGACCCAGCCGACGTGG
GATAACTCCATCGAGTTCATCGCCCCCAGAGCTCCCGTCCCA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:659249..664540+

>mRNA_D-herbacea_F_contig100.238.1 ID=mRNA_D-herbacea_F_contig100.238.1|Name=mRNA_D-herbacea_F_contig100.238.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=492bp|location=Sequence derived from alignment at D-herbacea_F_contig100:659249..664540+ (Desmarestia herbacea DmunF female)
ATGACATCATCCAAGCAGCAACACCAGATTCCTCTCCATTTCGACAAGAT
GACATCATCCAAGCAGCAACACCAGATTCCTCTCCATTTCGACAAGTGGG
TCGTGACCGTTAGAGGAGGGAAGTGGGTCGTGACCGTTAGAGGAGGGAAG
GATTTGACGCGAGGAGACCAGCGAGGCGGGTCTATATTCTCGAAGATGAG
TCCCTTCTGTGAGCTATCCCTTGGAGACCAAGGTCCCATATCGACCAGTG
TCAAGCCCAACACGACCCAGCCGACGTGGGATAACTCCATCGAGTTCATC
GCCCCCAGAGCTCCCGTCCCAGATTTGACGCGAGGAGACCAGCGAGGCGG
GTCTATATTCTCGAAGATGAGTCCCTTCTGTGAGCTATCCCTTGGAGACC
AAGGTCCCATATCGACCAGTGTCAAGCCCAACACGACCCAGCCGACGTGG
GATAACTCCATCGAGTTCATCGCCCCCAGAGCTCCCGTCCCA
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