mRNA_D-herbacea_F_contig100.234.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.234.1
Unique NamemRNA_D-herbacea_F_contig100.234.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig100.234.1 vs. uniprot
Match: D7G045_ECTSI (Similar to fidipidine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G045_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 1.690e-61
Identity = 112/153 (73.20%), Postives = 128/153 (83.66%), Query Frame = 1 
Query:    1 RRQREEDATPGHAELLQYLLRFEELGRHALERERQLRRFQTERSALALTREFLANEARLLETIAGGVEDASKGKAAAREGYLRQLEGIVEGVDDSLANQTRLLDAARSRRRAAEETKVSVAEERKRFLAGSKELTDECYRYEALNAHLALMRR 459
            RRQREED   GHAELLQYLLRFEELG+H+LER+ QLRR + ERS L+LTRE LA +ARLLETIAGGVE+ASKG    RE YLRQ++GIVE V+DSL +QTRLLD  R RR  AEE + SV E+RKRF AG+KEL+DECYRYE+LNAHLALMRR
Sbjct:  244 RRQREEDVALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERSTLSLTRELLATQARLLETIAGGVEEASKGGKGVREAYLRQIKGIVESVEDSLEDQTRLLDNVRRRRHVAEELQASVREDRKRFFAGTKELSDECYRYESLNAHLALMRR 396
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BLAST of mRNA_D-herbacea_F_contig100.234.1 vs. uniprot
Match: A0A6H5JTA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.200e-28
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 RRQREEDATPGHAELLQYLLRFEELGRHALERERQLRRFQTERSALALTREFLANEARLLETIAGGVEDASKGKAAAREGYLRQLEGIVEGVDD 282
            RRQREEDA  GHAELLQYLLRFEELG+H+LER+ QLRR + ER  L+LTRE LA +ARLLETIAGGVE+AS G    RE YLRQ++GIVE   D
Sbjct:  284 RRQREEDAALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERLMLSLTRELLAKQARLLETIAGGVEEASTGGKGVREAYLRQIKGIVEVSGD 377
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BLAST of mRNA_D-herbacea_F_contig100.234.1 vs. uniprot
Match: A0A6H5JXP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.460e-19
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:  265 VEGVDDSLANQTRLLDAARSRRRAAEETKVSVAEERKRFLAGSKELTDECYRYEALNAHLALMRR 459
            ++ V+DSL +QTRLLD  R RR AAEE + SV E+RKRF AG KEL+DECYRYE+LNAHLALM+R
Sbjct:    3 LKSVEDSLEDQTRLLDNVRRRRHAAEELQASVREDRKRFFAGMKELSDECYRYESLNAHLALMQR 67
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BLAST of mRNA_D-herbacea_F_contig100.234.1 vs. uniprot
Match: UPI001425AACA (coiled-coil domain-containing protein 93-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AACA)

HSP 1 Score: 56.2 bits (134), Expect = 3.390e-5
Identity = 42/146 (28.77%), Postives = 73/146 (50.00%), Query Frame = 1 
Query:    7 QREEDATPGHAELLQYLLRFEELGRHALERERQLRRFQTERSALALTREFLANEARLLETIAGGVEDASKGKAAAREGYLRQLEGIVEGVDDSLANQTRLLDAARSRRRAAEETKVSVAEERKRFLAGSKELTDECYRYEALNAHL 444
            QR+ D  P  AEL QY  RF EL +      ++ ++F T  + L  T+ +L  E  LL +I    + A    A  ++ +L+Q EGIVEGV ++ A   +     ++ R    +  + + E+++ +    K+  +EC + E L + L
Sbjct:  415 QRKIDEVPSRAELTQYQRRFIELYKQMSSTHKETKQFYTLYNTLDDTKLYLEKEVELLNSIHDNFKVAMSSNAG-KDQFLKQFEGIVEGVKNNQAKVDKRRQEEKASRDRLNKNYLDMIEKQRLYFKTIKDFKEECRKNEILLSRL 559
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G045_ECTSI1.690e-6173.20Similar to fidipidine n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JTA4_9PHAE3.200e-2871.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXP6_9PHAE2.460e-1969.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001425AACA3.390e-528.77coiled-coil domain-containing protein 93-like n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:610606..614244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score66.6
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog43151.ADAC000837-PA
Preferred namefidipidine
Hectar predicted targeting categoryother localisation
GOsGO:0006810,GO:0006892,GO:0006893,GO:0008150,GO:0016192,GO:0048193,GO:0051179,GO:0051234,GO:0098876
EggNOG free text desc.Coiled-coil domain-containing protein (DUF2037)
EggNOG OGs38GZI@33154,3BARN@33208,3CUTD@33213,3SHNS@50557,41XPN@6656,44X0U@7147,45F9R@7148,KOG2701@1,KOG2701@2759
COG Functional cat.S
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
Exons2
Model size914
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.234.1prot_D-herbacea_F_contig100.234.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 611056..614244 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927415.952708-UTR-D-herbacea_F_contig100:610605..6110551622927415.952708-UTR-D-herbacea_F_contig100:610605..611055Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 610606..611055 -
1690790159.074341-UTR-D-herbacea_F_contig100:610605..6110551690790159.074341-UTR-D-herbacea_F_contig100:610605..611055Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 610606..611055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927415.9637961-CDS-D-herbacea_F_contig100:611055..6112471622927415.9637961-CDS-D-herbacea_F_contig100:611055..611247Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 611056..611247 -
1690790159.0849931-CDS-D-herbacea_F_contig100:611055..6112471690790159.0849931-CDS-D-herbacea_F_contig100:611055..611247Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 611056..611247 -
1622927415.9732597-CDS-D-herbacea_F_contig100:613974..6142441622927415.9732597-CDS-D-herbacea_F_contig100:613974..614244Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 613975..614244 -
1690790159.0932004-CDS-D-herbacea_F_contig100:613974..6142441690790159.0932004-CDS-D-herbacea_F_contig100:613974..614244Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 613975..614244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.234.1

>prot_D-herbacea_F_contig100.234.1 ID=prot_D-herbacea_F_contig100.234.1|Name=mRNA_D-herbacea_F_contig100.234.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=154bp
RRQREEDATPGHAELLQYLLRFEELGRHALERERQLRRFQTERSALALTR
EFLANEARLLETIAGGVEDASKGKAAAREGYLRQLEGIVEGVDDSLANQT
RLLDAARSRRRAAEETKVSVAEERKRFLAGSKELTDECYRYEALNAHLAL
MRR*
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mRNA from alignment at D-herbacea_F_contig100:610606..614244-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.234.1 ID=mRNA_D-herbacea_F_contig100.234.1|Name=mRNA_D-herbacea_F_contig100.234.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3639bp|location=Sequence derived from alignment at D-herbacea_F_contig100:610606..614244- (Desmarestia herbacea DmunF female)
AGGCGGCAGCGGGAGGAAGACGCCACTCCGGGACATGCGGAGCTGCTGCA
GTACCTGCTGAGGTTCGAGGAGCTAGGCAGGCACGCGCTGGAGAGGGAGA
GGCAGCTGAGAAGGTTTCAGACGGAGCGGTCGGCGTTGGCTCTGACGAGG
GAATTTTTGGCGAACGAAGCGAGGCTGCTGGAGACGATTGCCGGCGGCGT
GGAGGATGCTTCGAAGGGAAAGGCGGCGGCCAGGGAGGGGTACTTGCGAC
AGCTGGAAGGAATTGTTGAGGTGAGTTTGAGAATCAAATTCTGGCTTTGG
AGGAGGCGGCCGCGGTGGCTGACGGGAACGGTGCGCGGCGCCGAAAGGAG
TTGTACATTTCTGATCTATCATTTGTGATTAATGCTCGGCGCAACGAGCC
CCCCCCCCCGGGATGTTGGAGGTGTTGGGCGAGGCGACCTATAACGAGCA
CGCGGACTGCCACCCCCACCCCCCCCGGGGTAGAGCGAGAAGCATATAGT
GGTGGTAATAGACAAAAAAAAATATCATCTGGGCCAGCCTTAAACATTCA
CGTTCCTTTGGACGACCATACCTGTGGCTCATTCGGATTCACGAATTAAC
CCGATGTATGCATACTTCAGTATGTTTGGGAACTGGAAATCGACATGATG
GTCATAATCTTATGCCGTTGTTCGATTGGCCAAGTTTGGCCGATGTCCTT
ACTATAGTGCATTTAGTTTAGGGTACGTCACAAAGCGCGTTCATTCTAAA
AAAAAATACTGGTAGCAAGTAATAATGTATGATACAAAGGCGGCGGCATG
ATTACAGTGTCCAACCCGTTTATGAGACAACATTCGTGTCCGCCAGTTTC
TGGTACAGAGTACAGAGCTTTCGTTCTCTCTTCTCTAGGTGCAAGAATCT
GTACAGACACTGAGTATGTTACTGGATGTCGTAGGGTAAGAAGGACGATT
TTTTCACGTAAAGACGAGAAAAACAACAGCTACAACCGACACGCACACTG
AAGAGTGCACTGGTGACGCCAGCCTGCAACCTTGATTCGAACCGTTACTG
TATGTAGGGTACCTCACAACCCTATAAATCGCGCCAAAGGAGGCACCTCC
GTGGTCGCAGGCACCACCTCGGGCGCTACTGCCTGGGACGCTTCTGCCGC
AACCCGGCGCTGCGTCGCCAAAAACGACAGTTTCCCCCTCTTTTGAAAAA
CACTTGTCTCGGGAGAAGCAGCCCCGTCCCGACCGCCGCCCCTACGCCGA
GCCAGAATGTACTGTGCATGAGTGCTGTTCATCCCAATGCGGGTGACGGT
TTCGCTAACGATGCGGCGCCGCAATTGTTATCGCGCCCTGTTGTCGTCCT
TTGTAAATCGTGTACTAGTTTTCGGGGATTCTCGTGTAGAACAAGCTATA
TTATGTTTTGTCAAAAGAAATAATGTAATGCTCAGCTCAGTTTAAAGAAT
TTTGAGCCAGTGTTTCACACTATTATAATGTTGAAGAACTCGTTAAAATT
TGCTGAAGGCTCGAAATTTTGTTTTTTGTAGGGGGAGGTAGGTCTAAGGG
ATTTTACATCATTTGACAATGTTGTACTGGCTGTAACTTGACGCGGGAAA
AAAAAGGTTTTGGAACGTTCAGCGACGAGCCGTGTAGTGATGAAATGATA
CAAACGTTTGATGTATTTTTAAGTAAAAAAAAAATCTTGTGTCCAAATTT
CAGCTCCAATCTCTCCTAAAACCTAAATTGAGCATCCTTGGTCAAGCAAA
AAAAAATGGCTCTACGAGTAGACTGGCCTACCATAGCTCTTATTGACTCA
CGCAGGTGCCCTTCCTGTTTCGGGCCGGCTCTCGCTCGCCTCAGTTTATT
GTCTCAAGATTCCGGAAATATTCCCCAATCACCAACAACATGCGTTTTCA
TAGCGTGCGCGTCATTCACGGTAATATGTCACCTTGCTTTCCTGGACTGA
TACTTGCTACTTCCGTTTTTATTTTTTGGAATCCTCACCTTCGTCCCGTT
GGCTCTCTGCATTCACTAGTGATAGTACAGTAGTATTATCTAGTATGGTG
TTTGTGCAGCTACTACTGTACTGTTGTACTGTTGTCATAACTCGTGCGGT
GTATGCTCCAACACACCGCTTTTCACTACACACCTTTGCGCCGGCCTATT
TAGTCTGACACGCTCGCGTCCGCACCATTGGGTACGATAGCGTTACCAGA
ATCAATCGTTGTCGCCAAGGTTGAGGGCCGATCGGGCGCACCGTACTATA
CTCGGGTCGTTTACTGGTATAGCTTAGAAGACTTTCTTCACCGGGGATGG
GTCATTATCTACTTCCCCCCCCGCCCCCTCCAAGAAAAAGGTGGTTCGAT
TTATTTATGTCACAGCTTTGGCCGACGGGTTCTATCGATCTATCGATTCT
GCCCAGCCGGCTCCAGTCGTTTTCCCGGATTTTGTCAATCCTCACTATGG
TTTTTTGGGGCTACTGTATATATCAGCCAGTTAGCGCCAGGTTTACCGGG
GGTCGGAAATCGCCCCCTCCGGTAATAATTGTATATATAGATATAGATAC
ATGTACTGGGTGGTTCGAACCAATTTTTGTCGGGCCTTTGCACTGCTTTT
AGGCACGCTACGGCACGGGGGGGTACTCAATTTTCTTGAGGCTATGAGGA
GAGCTCCATGTCTCACCCAAAAACCGACGTTGACCAAAATTGTACGCGCC
ACCGGATAAACAATGCCACGGGCTAGGTATGTGTCGAGTATTGGTTTGCA
ACACGAATGAGGTTTCAAAAGATACTGGGTGGTTCTTCAGTTGAGGAGCC
CCATCAATCAGCCCCCCCTACGGTAGGACGACTCTTTTGTCTGTTTTTCC
ACGTGAGTACCACATTCCACCGAGCACACCCTCGTGCGCTGCAACGCTGT
TGCTATTACTCTTTCTCCTTCAATTCCAAGTCTTGCCTCCCCCCACCCCC
GTCCCCCCCCCCCCCCCCGCCGCCGCCGCCTCTGTTTGCATCAACAGGGA
GTGGATGATTCGTTGGCCAATCAAACGCGCCTGCTGGATGCTGCTCGAAG
CCGACGACGCGCGGCGGAGGAAACCAAGGTGTCCGTCGCCGAGGAAAGGA
AAAGATTCCTGGCCGGGTCGAAAGAGTTGACGGACGAGTGCTACCGCTAC
GAGGCGCTCAACGCACACCTAGCTCTCATGCGTCGGTAGTCGTAGGAAAG
CAGCGCGGACTGGTTGATACGTGTAGTATAGCTAGGATAATAGCGCACAA
CACACGCACACACAGGCTCAGTATAATAGGGAGGGAGTGTTTCCCCCCCT
TATGTGCTGACGTTTTCCGTATTTCGTTTTTTCATATGACAGGGGTGGCC
CAATGGTCTAGTGGTTAGGGTGTTAGCCTCTGTTGGCGGAAGTTGGGGGT
TCGATCCCCGGTGGCACTTTTCTGTTCTATCTTCCGTCGCGGAAAATGCG
AGAGCGTGAGTAAGCACAATTCGATGAAAGTCGACGAGGGAAGAACGTGC
TGCACTCTTCTCGCGACAAAAATGTAGGCATGTACCGTAGTGGGAAGGCG
GGAGGAGCGCCTACTATGTGACCCCGAATCTGAGTTACGAAGAGAGATGG
AGCTAGAGAAAGAATAGAGCGAAGATAATAAATGGGACG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:610606..614244-

>mRNA_D-herbacea_F_contig100.234.1 ID=mRNA_D-herbacea_F_contig100.234.1|Name=mRNA_D-herbacea_F_contig100.234.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=924bp|location=Sequence derived from alignment at D-herbacea_F_contig100:610606..614244- (Desmarestia herbacea DmunF female)
AGGCGGCAGCGGGAGGAAGACGCCACTCCGGGACATGCGGAGCTGCTGCA
GTACCTGCTGAGGTTCGAGGAGCTAGGCAGGCACGCGCTGGAGAGGGAGA
GGCAGCTGAGAAGGTTTCAGACGGAGCGGTCGGCGTTGGCTCTGACGAGG
GAATTTTTGGCGAACGAAGCGAGGCTGCTGGAGACGATTGCCGGCGGCGT
GGAGGATGCTTCGAAGGGAAAGGCGGCGGCCAGGGAGGGGTACTTGCGAC
AGCTGGAAGGAATTGTTGAGAGGCGGCAGCGGGAGGAAGACGCCACTCCG
GGACATGCGGAGCTGCTGCAGTACCTGCTGAGGTTCGAGGAGCTAGGCAG
GCACGCGCTGGAGAGGGAGAGGCAGCTGAGAAGGTTTCAGACGGAGCGGT
CGGCGTTGGCTCTGACGAGGGAATTTTTGGCGAACGAAGCGAGGCTGCTG
GAGACGATTGCCGGCGGCGTGGAGGATGCTTCGAAGGGAAAGGCGGCGGC
CAGGGAGGGGTACTTGCGACAGCTGGAAGGAATTGTTGAGGGAGTGGATG
ATTCGTTGGCCAATCAAACGCGCCTGCTGGATGCTGCTCGAAGCCGACGA
CGCGCGGCGGAGGAAACCAAGGTGTCCGTCGCCGAGGAAAGGAAAAGATT
CCTGGCCGGGTCGAAAGAGTTGACGGACGAGTGCTACCGCTACGAGGCGC
TCAACGCACACCTAGCTCTCATGCGTCGGTAGGGAGTGGATGATTCGTTG
GCCAATCAAACGCGCCTGCTGGATGCTGCTCGAAGCCGACGACGCGCGGC
GGAGGAAACCAAGGTGTCCGTCGCCGAGGAAAGGAAAAGATTCCTGGCCG
GGTCGAAAGAGTTGACGGACGAGTGCTACCGCTACGAGGCGCTCAACGCA
CACCTAGCTCTCATGCGTCGGTAG
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