mRNA_D-herbacea_F_contig100.226.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.226.1
Unique NamemRNA_D-herbacea_F_contig100.226.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: A0A7S2TQT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQT0_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 4.050e-26
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 2 
Query:  587 SFDDSRYWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIELRYHKTCFSMIADPRSQPSSSANVGKFVQSLKGTVAPEELYRKMRTRGHW 877
            S  +S+YW + +R     D+GH CRECKRP + + E IA+RRGGRIE+RYH+ CFS  +DPR+Q  +S   GK+V+ + GT AP   Y+KMRT  HW
Sbjct:   25 SLAESQYWQHRYRPCVARDLGHTCRECKRPLTKIGETIAIRRGGRIEMRYHEACFSGESDPRTQKKASHKQGKWVRCVAGTKAPLGKYKKMRTTSHW 121
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: A0A8J5X274_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X274_DIALT)

HSP 1 Score: 111 bits (278), Expect = 1.580e-25
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 2 
Query:  593 DDSRYWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIELRYHKTCFSMIADPRSQPSSSANVGKFVQS-LKGTVAPEELYRKMRTRGHW 877
            +D+RYWD+AFR   K D+GH CREC++PF+ L E +A RRG R+ LRYH+ CFS +ADPRSQP    N GK+  S      AP E + KMRT  H+
Sbjct:    5 NDTRYWDFAFRAVEKSDLGHVCRECRQPFARLGEPLAERRGARLALRYHRDCFSGLADPRSQPRGPFNEGKWAGSHAVSAAAPAEPFHKMRTAAHF 100
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: A0A8J1Z4U7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z4U7_9DINO)

HSP 1 Score: 102 bits (254), Expect = 1.240e-20
Identity = 57/123 (46.34%), Postives = 71/123 (57.72%), Query Frame = 2 
Query:  521 RASAPPVVPPSLSLPSSTAFG----GSFDDSRYWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIELRYHKTCFSMIADPRSQPSSSANVGKFVQSLKGTVAPEELYRKMRTRGHW 877
            R SA P + PSL+   S A      G+ D++ YWDY  R T + D+GH CREC++PFS + E I  RRG RI  RYH  CFS  ADPRSQ  SS + G  V   +   AP   + KMRT  H+
Sbjct:   48 RWSAAPSLHPSLAGAQSVACSEVTIGAGDETLYWDYQHRLTLRSDLGHKCRECRKPFSKIGEPITERRGSRIACRYHAACFSGYADPRSQARSSTHEGNLV-GTQFEAAPGTPFSKMRTDTHF 169
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: L1IGL9_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IGL9_GUITC)

HSP 1 Score: 95.9 bits (237), Expect = 5.990e-20
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 2 
Query:  584 GSFDDSRYWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIELRYHKTCFSMIADPRSQPSSSANVGKFVQSLKGTVAPEELYRKMRTRGHW 877
            G+ +++ YWD+  R   + D+GH CRECK+PF  L + +  RRG R+ LRYH +CFS   DPRSQ  SSA VG  +   + + AP     KMRT  H+
Sbjct:   13 GAGNETEYWDFVHRKVERTDLGHRCRECKQPFDRLGDPLTERRGARVSLRYHTSCFSGYKDPRSQSLSSAYVGT-LSGTQSSQAPTSRTHKMRTDSHF 109
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: A0A8J2F2Y4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2F2Y4_9DINO)

HSP 1 Score: 101 bits (252), Expect = 1.740e-19
Identity = 60/139 (43.17%), Postives = 79/139 (56.83%), Query Frame = 2 
Query:  497 TTSIDNHRRA--SAPPVVPPSL-------SLPSSTAFGGSFDDSRYWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIELRYHKTCFSMIADPRSQPSSSANVGKFVQSLKGT---VAPEELYRKMRTRGHW 877
            T S+   RR+  SA P + PS+       SL  S    G+ D++ YWDY  R   + D+GH CREC++PF+ + E I  RRG RI  RYH  CFS  ADPRSQ  SS + G+    L GT    AP+  + KMRT+ H+
Sbjct:  126 TASVATTRRSTWSAAPSLHPSVAASGKAFSLACSETTIGAGDETMYWDYQHRLAQRSDLGHMCRECRKPFTQVGEPITERRGSRISTRYHAECFSGYADPRSQARSSTHEGR----LAGTQFEAAPDGPFSKMRTQSHF 260
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: A0A7S1LEE0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LEE0_NEODS)

HSP 1 Score: 93.6 bits (231), Expect = 2.990e-19
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 2 
Query:  605 YWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIELRYHKTCFSMIADPRSQPSSSANVGKFVQSLKGTVAPEELYRKMRTRGHW 877
            YW    R     D+GH C+ECKRPF  + E + VRRGGRIELRYH+ C+S  ADPR+Q SSS N  +   +L    AP   +RKMRT  H+
Sbjct:   18 YWASQARSCEPRDVGHPCKECKRPFQRVGEPLMVRRGGRIELRYHEQCYSGSADPRTQASSSFNSSQHAAALSA-AAPALPFRKMRTSSHF 107
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: A0A3P3YIB7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIB7_PLABS)

HSP 1 Score: 82.0 bits (201), Expect = 2.860e-13
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:  521 RASAPPVVPPSLSLPSSTAFGGSFDDSRYWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIELRYHKTCFSMIADPRSQPSS 787
            R  A PV  PS   P   A    + D  YW +  R     D+GH CRECK+P ++L + IA RRG R+++RYH+ CFS   DPRSQ S+
Sbjct:   43 RKKAAPVRKPSGQRPVHVA---KYGDEDYWSFQVRECRPADLGHMCRECKKPITALGDLIAERRGARVQMRYHRACFSDDGDPRSQDSA 128
[Close]
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Match: A0A6H5KQT6_9PHAE (Pyr_redox_dim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.430e-8
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 2 
Query: 1436 LHRVKGIGFERDAVWIPLQGFFA*GLGYTHNLEILRSLQALFLLVPYDLLGDRENPQGIPQGGFSP 1633
            +HRV+G+GFER AVWIP +GFFA G GYT  +   ++L  LFL++P D+L DRE  +   +  F P
Sbjct:  124 VHRVQGVGFERVAVWIPSRGFFAQGQGYT-AVSRGKTLDGLFLVLPDDVLQDRELAREFLKEAFQP 188
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S2TQT0_9EUKA4.050e-2651.55Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8J5X274_DIALT1.580e-2553.13Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J1Z4U7_9DINO1.240e-2046.34Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
L1IGL9_GUITC5.990e-2044.90Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A8J2F2Y4_9DINO1.740e-1943.17Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S1LEE0_NEODS2.990e-1950.55Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A3P3YIB7_PLABS2.860e-1344.94Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A6H5KQT6_9PHAE1.430e-850.00Pyr_redox_dim domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:475990..480846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue7.9e-18
Seed eggNOG ortholog227086.JGI_V11_126617
Hectar predicted targeting categoryother localisation
EggNOG OGs2E6M4@1,2SDAD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1937
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.226.1prot_D-herbacea_F_contig100.226.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 476267..477528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927415.068856-UTR-D-herbacea_F_contig100:475989..4762661622927415.068856-UTR-D-herbacea_F_contig100:475989..476266Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 475990..476266 +
1690790158.2992606-UTR-D-herbacea_F_contig100:475989..4762661690790158.2992606-UTR-D-herbacea_F_contig100:475989..476266Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 475990..476266 +
1622927415.107458-UTR-D-herbacea_F_contig100:477528..4775391622927415.107458-UTR-D-herbacea_F_contig100:477528..477539Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 477529..477539 +
1690790158.329678-UTR-D-herbacea_F_contig100:477528..4775391690790158.329678-UTR-D-herbacea_F_contig100:477528..477539Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 477529..477539 +
1622927415.1174488-UTR-D-herbacea_F_contig100:479800..4808461622927415.1174488-UTR-D-herbacea_F_contig100:479800..480846Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 479801..480846 +
1690790158.3409016-UTR-D-herbacea_F_contig100:479800..4808461690790158.3409016-UTR-D-herbacea_F_contig100:479800..480846Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 479801..480846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927415.0814018-CDS-D-herbacea_F_contig100:476266..4767001622927415.0814018-CDS-D-herbacea_F_contig100:476266..476700Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 476267..476700 +
1690790158.311351-CDS-D-herbacea_F_contig100:476266..4767001690790158.311351-CDS-D-herbacea_F_contig100:476266..476700Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 476267..476700 +
1622927415.0930967-CDS-D-herbacea_F_contig100:477359..4775281622927415.0930967-CDS-D-herbacea_F_contig100:477359..477528Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 477360..477528 +
1690790158.3205724-CDS-D-herbacea_F_contig100:477359..4775281690790158.3205724-CDS-D-herbacea_F_contig100:477359..477528Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 477360..477528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.226.1

>prot_D-herbacea_F_contig100.226.1 ID=prot_D-herbacea_F_contig100.226.1|Name=mRNA_D-herbacea_F_contig100.226.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=201bp
MKKEGSSTSGTNKDARQLSLEGERRHVQKARTSGVRRQSESLGWSRRTTP
PASASTKTAVSHRQQISPSDKRETTSIDNHRRASAPPVVPPSLSLPSSTA
FGGSFDDSRYWDYAFRHTNKGDMGHHCRECKRPFSSLNEDIAVRRGGRIE
LRYHKTCFSMIADPRSQPSSSANVGKFVQSLKGTVAPEELYRKMRTRGHW
*
back to top

mRNA from alignment at D-herbacea_F_contig100:475990..480846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.226.1 ID=mRNA_D-herbacea_F_contig100.226.1|Name=mRNA_D-herbacea_F_contig100.226.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4857bp|location=Sequence derived from alignment at D-herbacea_F_contig100:475990..480846+ (Desmarestia herbacea DmunF female)
GTACGAGGTACTACAACAACAGTAGTAGTAGAACTAACTACCACCCTCTA
GAGACAACCGTCGCAGTACGAACTCACATTTGGTGAAGAGTGTAGGCCTG
GACCTCGAAAGCCGACTATGCGATTGTATTTGAAGCTTGGCTATGATGGC
TGAAGAAGGTTAGGACATAAGGGGACTTTGTATGTAAAAATAAAAAGGGG
ACCTCTTGTCTCTTGTCCCTTCACACGGAACAACGGCAAGCCGAGGCAAG
TCGAGGCAATCATCTCTAGCGACGGCGATGAAGAAAGAGGGGTCGAGCAC
GAGCGGCACCAACAAAGACGCACGACAATTGTCGCTGGAAGGAGAGCGAC
GGCATGTACAGAAGGCGAGAACGAGCGGCGTGCGTCGCCAGTCTGAGTCT
TTGGGGTGGTCACGGAGGACGACACCACCCGCATCAGCGTCAACAAAAAC
CGCCGTCTCTCACCGTCAACAGATATCACCGTCCGACAAGCGAGAAACAA
CTTCTATCGATAATCACCGCCGAGCGTCAGCTCCACCCGTCGTTCCACCC
TCGCTGTCATTGCCGTCATCTACTGCTTTCGGTGGAAGCTTTGACGACAG
TCGATACTGGGACTATGCATTCCGTCACACGAACAAGGGAGACATGGGCC
ACCATTGTCGCGAGTGTAAGAGGCCGTTTTCTTCGCTGAACGAAGACATC
GCCGTTCGAAGGTCGGTGCCTCAAGTCCGTCGTTGTGGCACTTGAACTAC
TGCAGGAATGATATTATACGATGCTTAATTTTTTATATTGTTGTGGGTGT
CGAGTATCAGCTACTCGTATAGGCAAAGATGTCAGGAGACTCGTCGTAAA
CTCCCCGTCAAAACCTTTCTCGGTGTTAACATACTAGTTGTAGTATGGGG
CTTCCTTGACCAGCCATCCGTCCACGGGCAAAATTGCCGTACCCCTCGTA
CAGTAGCATTTTTGGCTACAAAGACTATCCTAGGTATATCATACCACGTA
TGCTGTGCAACAACACTAATTAGATCGGTGTGAATGGCACGCAGCGGCAG
AGGGGCGACTACTGTTCTCTACGTCCTTGTGCGGCAAATTGTCTTGACCG
TCTCCGTGTGCTTTTGTCACCCACGCACCCTCACGTTCCGCATTTTTTGT
GGGTTAGCAAGCCTTATGTCGGTGTCGATGGTGCGGAAAAACAGCCATGC
AGAGAGCCACGGAATAGTGCCGGTGCTACGAGGATTGTTAACAGCAGCGC
CGTTGGTAATGGTTGCATTTGTTTTCTGTCCTTGCTCTGCCCTGTGTTTA
ACGGGGATACCGCGCGCAACGCTATAACCCGAGCTCTATCCCATGCACCC
GAACCCTTCGCAATTGGCAGAGGTGGGCGCATCGAGCTGAGGTACCACAA
GACCTGCTTCAGCATGATTGCCGACCCGCGCAGCCAACCTTCGAGCTCGG
CGAATGTCGGGAAGTTCGTGCAGTCGCTGAAGGGCACCGTTGCCCCGGAG
GAATTATACCGCAAGATGCGCACACGTGGCCACTGGTGAAACTATCTGAG
GTATTTTGTCGGCACAAACCCAGAGTAGTGCGTTGGAGCTAAGAAGGTGT
TACCGTTGTGACTTCTTCGCTATTAATATATTAATACAAGCCCTGTCTCT
TGCGTGTATCTATACTTCGAAGTATGGTGAAAGCTGCTCGCAGGACTGAA
GTGGTAGTAGTAGGCAGGTTGTGACGAGCTATGTTTCCGTTAAAAGTGTT
AGAAATAACGTATCTGGGTACGGCGTGTATCACAGCCCACCATGGGTGGC
AATACTCGGGTGAAGTAGGAAGCACTCTGGCGACTAAATCGGTGCTTGTG
GAAGACAGAATATGTTGTCCTAATGCCGCTTGTGGGACCTCCACTGATTT
TGACTTGCTGATTTAAGTAGGTACTGAAGGAAAGTGAGACGGTGGGCGCG
GTGCACAGGACGAGGTTCTTGGTGCACACTCTGACTCTGACTCTTAGCCG
TTGATGGTTGCACTCTAACTGCAGCTCTTGATACCACTCTAGCCCGTACC
CTTGGTAGTAGCACTCTCGCTGCAGTGTCTCTGTTGGTGCGATAGGACTC
TCGCTTCAATATCTCCCTTGATAGATAGTGATGCACCTCTACATGTAGTC
TTGGTGTCAACCTCCATGCCAACGAGAGCTTACTGCTGTAGAACCATGTA
TCTATAGCTCTAAATGTAGGGCACTGTTACGCTGCTCTATTTGTAGCAAA
CATAATAGAGCCCATGGTTGCAGTACAGTATGATGATTAGATAGGGCTGG
GCCCTGGTACAGTATGTACTGCCCGTACTACTGTACTGACTGAGAGAGCT
ACCACGGTTGCCAGTACCTGGATTATTTACGTACGTCCCACAATAATGCC
TTATAACACAGCGGAAACCCATCAACATGCACAGTGAGGAGCAAAGAGGG
CACGCAGAACAGCGAGAGAGGGGAGAGGAGTTTTTTCTCTTCTGTAGGAA
TTGAGAGAAGGAACATTGTTCACACGATGCAGTCCCCAATGTTTCTGTGT
TTTTTTGCGGGCAAATGTAGTTTTAAGTTAAAACAGTAGTTGCTTTGCCG
CTGTTCTTAGTTGTTATGGACCTACTTCTTTGGTTTATTTTCAAGGTGGC
CGCTGAAGCCCCCCCCCCCCCCTCACAGCAAGTACGGGTAGCCCCTTTCA
TTTTTATTCACCGCCGCTTGGTCTACCGTTTTGGCCGTGTCACTAGGTAT
TCATACGTTTTGTTTATCTTTATTTCCCTCCTGTTTGCCGTTTAATGTTT
ATTCTCTTGGCTGCAGTGTTGTATGATAGTAAACCACATTCAACGTTTTT
ACCGATGTGTCTGGTGTTTTTTTCGTTTCGTTCATGATTGTTTTCTGGTG
TTGCTACGTAATGCTGGTGGGAGCCTACCCTGTGATCGAAAGTTGGAGCC
ATGGGGCTGCCCTAATTATTACCGGTACATGGTATGTGATACGATTGTAG
TACAGAACCCAAGGTACCTCGAATAATATTAACTCGATAACTCGAGCATT
TACTCTCTTTTTCGATTTCGGCGGAGAATCTGAGCAAAACAATTTGTATC
ATACATATGCATCTGACGCAACGATTCAGTATCGCGCACTTCAAAGGATG
TTTTCAGTACAAGACCGTTATTCCAACCTTCCATTATCTAGGCTGCATGC
AGTGTGCAGTAGGCCGCACACTCCGGTACCATCGTGCGCTTTGTCCGCTT
TTTCTCATTTTTCCTTGGTCAATCTGCCACCAAAATACCTTTGAAACATG
GCCCGACACCAACATAGTTTTTAGCTCTAGTGCAGGCAAATCGCCTAAAC
ACGTGCCTCTGGCAGGGCGACTCCAGCGGGGCCCCCTCACCAGCTGGTGG
GGAGCAGGGATCGCAGCTTCGGTGCACTGGTCAGGTCCAGTGTACTGGCT
GCTGACGCAGTCTATACGTACTGTGTTGGCTGGGGCTACCAGGGCCCAGC
CCTATGGTTCGATGGACACTACTGTACATATATTTGTCTACATCATCAGT
AGCAGTGCGAAATTCAGTGCTAAGTACTGCACAGCAACTGGTACCGCTGC
ACACATATCTCATTGACTCGATCACATTAAAAAAACATGACAACCTCCAG
CCCATGATCTCATGTGTTTAATGCCTGGTGTGTTCAATACCTGCTGTCTT
CGGTGTCTGATGCCTGGACTACTACTACTTGAAGTGTCTCCTGTGAATAT
AGCATCTGTCCGCTGCCTGCGATATATAACCTTCCACCCTGCGCCGCCCT
CTGTTACGCAGACCCCGCAAGCAGTCTATCCTCTCGGGGTGGTTCGAAGC
CATAAGGATATCGTGGCTGACGCTATCGTCGAGCATGTCACGCTTGGGCT
TGCAAAAAGCATCGGCCAGTTGAGCAAGCAGTGTACACCTGATGGCGGTC
GATTCTTCATCTTCTCGAAGAGGCGATGGCTCGTACTATGAGGTTCGATG
TCTCCGATGCTATCGTAGACGTCTCTCGCAGGCAGCAACTATCGGCGTTC
AAGGCTCAGCTTGGTGGAAGACTCTTGAAGGATACCAATATATGCCTCTC
GCAGTGATAGATGTCGTAGCTGGGTTGATACCGAAGCCTCCCTTAAGGGC
AGAGGCAGATGAGATCAACCCCAGACAAAATTGGCTGGCGTGCGTAGTAG
TAGTGGAGCTGACCACGGGCAAAGGACACGGTAAGGTGTTCAACATACAG
GCGTTCCAAGAAAAAACGTGTGGGTACCAGACTGCCGGGGCGTTGTAGTT
CGTGGTGGGTACCCAGTCCTGCAGTGTCCATTCAGGGTTGCCGCATGTAT
AACCATTACATAGAGTGAAAGGGATAGGGTTTGAACGCGATGCTGTGTGG
ATCCCCCTACAGGGTTTCTTCGCGTAGGGACTAGGGTACACACATAATCT
AGAAATACTAAGGAGCCTACAGGCTCTGTTCCTACTCGTGCCATATGATC
TCCTCGGAGACAGAGAAAACCCCCAAGGAATCCCTCAAGGAGGATTTTCA
CCCGCCGATAGTTGCCATTCATGCCTGCAGGGAAATGCGGGCACGTTCAC
CGGCAGGCACAATAGGCATGGGGGTCAGGGATGTTGAGTATGCTCTAGTT
TGCGGGACTAGCTCCAGGAGTACGCATGCACTCCCAAACTACATGGACGG
GTTGGTGGCCCTTTCGGGATTGAATAAATCAGTATTGGCGTCTCGGGTTG
GAATGGGTTGCGTTTTTGTTTAGGTGGGGTTGGGTTGCTTGGTTGGGTTT
TGTTCGTCTGGTTTCAGCCGGGTTTGTAGTGTGTGATGCGGGTGACGGCA
ACAAAAC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig100:475990..480846+

>mRNA_D-herbacea_F_contig100.226.1 ID=mRNA_D-herbacea_F_contig100.226.1|Name=mRNA_D-herbacea_F_contig100.226.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1206bp|location=Sequence derived from alignment at D-herbacea_F_contig100:475990..480846+ (Desmarestia herbacea DmunF female)
ATGAAGAAAGAGGGGTCGAGCACGAGCGGCACCAACAAAGACGCACGACA
ATTGTCGCTGGAAGGAGAGCGACGGCATGTACAGAAGGCGAGAACGAGCG
GCGTGCGTCGCCAGTCTGAGTCTTTGGGGTGGTCACGGAGGACGACACCA
CCCGCATCAGCGTCAACAAAAACCGCCGTCTCTCACCGTCAACAGATATC
ACCGTCCGACAAGCGAGAAACAACTTCTATCGATAATCACCGCCGAGCGT
CAGCTCCACCCGTCGTTCCACCCTCGCTGTCATTGCCGTCATCTACTGCT
TTCGGTGGAAGCTTTGACGACAGTCGATACTGGGACTATGCATTCCGTCA
CACGAACAAGGGAGACATGGGCCACCATTGTCGCGAGTGTAAGAGGCCGT
TTTCTTCGCTGAACGAAGACATCGCCGTTCGAAGATGAAGAAAGAGGGGT
CGAGCACGAGCGGCACCAACAAAGACGCACGACAATTGTCGCTGGAAGGA
GAGCGACGGCATGTACAGAAGGCGAGAACGAGCGGCGTGCGTCGCCAGTC
TGAGTCTTTGGGGTGGTCACGGAGGACGACACCACCCGCATCAGCGTCAA
CAAAAACCGCCGTCTCTCACCGTCAACAGATATCACCGTCCGACAAGCGA
GAAACAACTTCTATCGATAATCACCGCCGAGCGTCAGCTCCACCCGTCGT
TCCACCCTCGCTGTCATTGCCGTCATCTACTGCTTTCGGTGGAAGCTTTG
ACGACAGTCGATACTGGGACTATGCATTCCGTCACACGAACAAGGGAGAC
ATGGGCCACCATTGTCGCGAGTGTAAGAGGCCGTTTTCTTCGCTGAACGA
AGACATCGCCGTTCGAAGAGGTGGGCGCATCGAGCTGAGGTACCACAAGA
CCTGCTTCAGCATGATTGCCGACCCGCGCAGCCAACCTTCGAGCTCGGCG
AATGTCGGGAAGTTCGTGCAGTCGCTGAAGGGCACCGTTGCCCCGGAGGA
ATTATACCGCAAGATGCGCACACGTGGCCACTGGTGAAGGTGGGCGCATC
GAGCTGAGGTACCACAAGACCTGCTTCAGCATGATTGCCGACCCGCGCAG
CCAACCTTCGAGCTCGGCGAATGTCGGGAAGTTCGTGCAGTCGCTGAAGG
GCACCGTTGCCCCGGAGGAATTATACCGCAAGATGCGCACACGTGGCCAC
TGGTGA
back to top