mRNA_D-herbacea_F_contig100.219.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig100.219.1 vs. uniprot
Match: A0A6H5JSB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB3_9PHAE) HSP 1 Score: 525 bits (1351), Expect = 1.450e-170 Identity = 379/844 (44.91%), Postives = 463/844 (54.86%), Query Frame = 1
Query: 31 EVLNEASWNIFGPLLGVIEQSSTAANSNFTEESVSPSPHSHDDHNLHGRSDNNGMPTRGEKQAEEVVLSERLVLELAEIFSPKELHIMALEHLHAYSGERALRVVLAVLRRSTQRMSPLQRAKFHESAMQPAFKATKRVAVSVRKYGGGSLPTTDDATHVDG----ASSSDDEECNIPLGGVTNNATTDGGMMAGEDGLLPPWAALIAAIAAAEASVEFVGPLVEQECEERLL------------EAREAANTTAVWAAAGQGSAAMVLRERAKMAASDLSVAAYIGFALSALAHTAEISVC-TAAATATATGDGADDCEAPAISLARAEERLVGLVVDGPVVDLQFVLTHGCRLAYVDRAKRRR--GEGGWEGGRERWMSRSSGYCASSRFGELAVAGAMPWPLRGVSALAYLVACVPRVRDAWLPLVWSRPTECWLFLPHAESLMRDRSKRIAAKGLELACFVAERLERFPDEAIDAFAFEWKPRDES---TGDERW------GGGD--------------------GVIETQQARFLPL---TTTSGDPLRKGTSGRQQQ-------------------WWFDPCHRFDLASYLQVLLDVVVSCPLPNLRARGHAALSSFLVATAEESRFHVLKHLINRCPWPNATGFLLDAFRREIDRVLRRT----------KRVADKRDGVRSSRSSGMSATAMEMEREGGAATSVRAGEAACSPFASAPAGDVVCEQLRRACREAPPMSLLMDMDSRTGGLTLARYAYALDGTGGD---------GDCEGRLKLREPTRLQENRQLVQGFLDELRRANATANSAGPDYFRLFILEDAAQQCLQELLL 2295
EVL+ SW FG ++G +E+ +T+A+SN ++ S SD T + LSERL L +AEIFSPKELH+MALEHLHAY+ R LRVVL +LRRSTQ+M +R KF E++++PA +ATKRV G + DA G +S SD +E + ++ + P AA AA +AAE + +F+GPL+EQ E+ L E R AA A +AG A+ E+ ++ASDLS+AAYIGFALSAL E SVC T G++D SLARA+ERLVG+VVD P+ DL+FVL HG R+++ KRRR EGG E G + G GE A+ GA+PW LRGVS LAYLVAC PR+RD WLPLVWSR TE LFLPHAE+LMRDRSKR+A KGLELACFVAERL FPD AFAF+W+P DE GD+ GGG G + R+ + T P R+ + QQ+ FDP H DLA +LQVL+DV+VSCPLP LR RGHAAL + L A E SRF VL+ L+ CPWPNA G LLDAFRREIDR LR+ ++ SPFASA AGDVVCEQLRRACR P SL+ DMDSRTGGL LARYA+ LD GG G GRL+LREP +L +N+ LVQG LDELR A TA++AGP++FRLFILEDAAQQCLQEL L
Sbjct: 72 EVLDTVSWEAFGLVVGCLERFATSASSNNSDSITGTFEKS---------SDEAETLTTSRDADDCAALSERLALAMAEIFSPKELHLMALEHLHAYTKARTLRVVLTILRRSTQQMVTARRWKFLEASLRPALEATKRV---------GLVAAAGDAPAEPGLPQKSSGSDADEXXXXXXXXXXXXXXXXXLPTADEDM-PSRAAYDAAASAAETAADFIGPLMEQASAEQALLAVSRVPTAGRGEGRPAAAVVAT--SAGGSGRAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCCTXXXXXXXXXXGSEDNPPARESLARAQERLVGIVVDSPL-DLRFVLLHGYRVSFASGVKRRRKRSEGGGEKGESHLPAAKLGGAVG--LGEAAINGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEALMRDRSKRVANKGLELACFVAERLGGFPDRT-GAFAFDWEPGDEEIDGAGDDXXXXXXXNGGGREEAHTPYGHTRTSAHNYEFYGCPDLLSHRYFTIFRPPPTPFHPFRRDVAAWQQRDADAGSSTISENTNPSSRRRLFDP-HHLDLAGFLQVLVDVMVSCPLPGLRTRGHAALMALLGAADEASRFRVLRRLVELCPWPNARGLLLDAFRREIDRALRQCGIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSSPFASALAGDVVCEQLRRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAWGRLELREPKKLLQNKLLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELEL 889
BLAST of mRNA_D-herbacea_F_contig100.219.1 vs. uniprot
Match: D7G1P6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P6_ECTSI) HSP 1 Score: 448 bits (1152), Expect = 4.540e-143 Identity = 332/794 (41.81%), Postives = 404/794 (50.88%), Query Frame = 1
Query: 16 RAGAAEVLNEASWNIFGPLLGVIEQSSTAANSNFTEESVSPSPHSHDD--HNLHGRSDNNGMPTRGEKQAEEVVLSERLVLELAEIFSPKELHIMALEHLHAYSGERALRVVLAVLRRSTQRMSPLQRAKFHESAMQPAFKATKRVAVSVRKYGGGSLPTTDDATHVDGASSSDDEECNIPLGGVTNNATTDGGMMAGEDGLLPPWAALIAAIAAAEASVEFVGPLVEQECEERLL------------EAREAANTTAVWAAAGQGSAAMVLRERAKMAASDLSVAAYIGFALSALAHTAEISVCTAAATATATGD-GADDCEAPAISLARAEERLVGLVVDGPVVDLQFVLTHGCRLAYVDRAKRRR--GEGGWEGGRERWMSRSSGYCASSRFGELAVAGAMPWPLRGVSALAYLVACVPRVRDAWLPLVWSRPTECWLFLPHAESLMRDRSKRIAAKGLELACFVAERLERFPDEAIDAFAFEWKPRDES---TGDER-----WGGGDGVIETQQARFLPLTTTSGDPLRKGTSGRQQQWWFDPCHRFDLASYLQVLLDVVVSCPLPNLRARGHAALSSFLVATAEESRFHVLKHLINRCPWPNATGFLLDAFRREIDRVLRRTKRVADKRDGVRSSRSSGMSATAMEMEREGGAATSVRAGEAACSPFASAPAGDVVCEQLRRACREAPPMSLLMDMDSRTGGLTLARYAYALDGTGGD---------GDCEGRLKLREPTRLQENRQLVQGFLDELRRANATANSAGPDYFRLFILEDAAQQCLQELLL 2295
RA EVL+ SW FG ++G +E+ +T SPSP+S SD T + LSE L L +AEIFSPKELH+M LEHLHAY+ R +RVVL +LRRST+RM+ +R+KF E++++PA KA KRV + + P + G+ ++ DG +P AA AA +AAE + +F+GPL+EQ ER L E R AA AV G A+ E+ ++ASDLS+AAYIGFALSAL E SVC G++D A SLARAEERL+G+VVD P+ DL+F L HGCR++Y KRRR EGG E G+ + + G E AV GA+PW LRGVS LAYLVAC PR+RD WLPLVWSR TE LFLPHAE LMRDRS+R+A KGLELACFVAERL FPD + A+AF+W+P DE GD+ W GG GRQ+ VL+DV+VSCPLP LR RGHAAL + L E SRF +L+ L+ CPWPN L RACR P SL+ DMDSRTGGL LARYA+ LD GG G GRL LREP +L +NR LVQG LDELR A TAN+AGP++FRLFILEDAAQQCLQEL L
Sbjct: 67 RAAVGEVLDTVSWEAFGLVVGCLERFAT-----------SPSPNSSGSVTGTFEKSSDEAETLTTSRDADDCAALSEGLALAMAEIFSPKELHLMTLEHLHAYTKARTVRVVLTILRRSTERMATARRSKFLEASLRPALKAAKRVGLVAAAGDAPAEPGLRQKSS--GSDXXXXXXXXXXXXXXXXXXXXXXXLLPTADGDMPSSAAYDAAASAAETAADFIGPLMEQASAERALLAVSGLPTAGRGEGRPAA--AAVAXXXGGSGHAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCXXXXXXXXXXXTGSEDNPAAGESLARAEERLIGIVVDSPL-DLRFALLHGCRVSYASGVKRRRRKSEGGGEEGKSQLPAARLGGAVG--LAEAAVNGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEVLMRDRSRRVANKGLELACFVAERLGGFPDRS-GAYAFDWEPGDEEIDGAGDDXXXXXXWNGG---------------------------GRQE-----------------VLVDVMVSCPLPGLRTRGHAALVAILSGADEASRFRLLRRLVELCPWPN-----------------------------------------------------------------------------LLRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARADSGRAEAGAAWGRLGLREPKKLLQNRLLVQGLLDELRGAVITANNAGPEHFRLFILEDAAQQCLQELEL 720 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig100.219.1 >prot_D-herbacea_F_contig100.219.1 ID=prot_D-herbacea_F_contig100.219.1|Name=mRNA_D-herbacea_F_contig100.219.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=702bp MPTRGEKQAEEVVLSERLVLELAEIFSPKELHIMALEHLHAYSGERALRVback to top mRNA from alignment at D-herbacea_F_contig100:401742..407027- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig100.219.1 ID=mRNA_D-herbacea_F_contig100.219.1|Name=mRNA_D-herbacea_F_contig100.219.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5286bp|location=Sequence derived from alignment at D-herbacea_F_contig100:401742..407027- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig100:401742..407027- >mRNA_D-herbacea_F_contig100.219.1 ID=mRNA_D-herbacea_F_contig100.219.1|Name=mRNA_D-herbacea_F_contig100.219.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4212bp|location=Sequence derived from alignment at D-herbacea_F_contig100:401742..407027- (Desmarestia herbacea DmunF female)back to top |