mRNA_D-herbacea_F_contig10.156.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.156.1
Unique NamemRNA_D-herbacea_F_contig10.156.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:800185..800926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size742
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.156.1prot_D-herbacea_F_contig10.156.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 800293..800916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.138722-UTR-D-herbacea_F_contig10:800184..8002921622927399.138722-UTR-D-herbacea_F_contig10:800184..800292Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 800185..800292 +
1690790148.6773112-UTR-D-herbacea_F_contig10:800184..8002921690790148.6773112-UTR-D-herbacea_F_contig10:800184..800292Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 800185..800292 +
1622927399.1590216-UTR-D-herbacea_F_contig10:800916..8009261622927399.1590216-UTR-D-herbacea_F_contig10:800916..800926Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 800917..800926 +
1690790148.7151966-UTR-D-herbacea_F_contig10:800916..8009261690790148.7151966-UTR-D-herbacea_F_contig10:800916..800926Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 800917..800926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.150054-CDS-D-herbacea_F_contig10:800292..8009161622927399.150054-CDS-D-herbacea_F_contig10:800292..800916Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 800293..800916 +
1690790148.7036948-CDS-D-herbacea_F_contig10:800292..8009161690790148.7036948-CDS-D-herbacea_F_contig10:800292..800916Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 800293..800916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.156.1

>prot_D-herbacea_F_contig10.156.1 ID=prot_D-herbacea_F_contig10.156.1|Name=mRNA_D-herbacea_F_contig10.156.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=208bp
MHGRSRASPVSLLPHVTSYLRTYFQHRAIRSLIHTIVYHNPALPLSSPDY
VCRHVFALFRIPPHTKTPSETKKKTEQNNATASNAAPLLARAYAYMTHFP
PVLPQKDHDDGSADITSCPNSRKQASARPISSRSISTLLSKRDVKNDRQL
RRNHIDITLPRAPFPYGMIKAAESSYRNSLPNHRHLDLAKPGFPRYLKNS
PSEEKWA*
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mRNA from alignment at D-herbacea_F_contig10:800185..800926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.156.1 ID=mRNA_D-herbacea_F_contig10.156.1|Name=mRNA_D-herbacea_F_contig10.156.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=742bp|location=Sequence derived from alignment at D-herbacea_F_contig10:800185..800926+ (Desmarestia herbacea DmunF female)
GACAAATCTGCCCATCACCGCAGCAACTCGTTCCGTACGAGGAGGGTCCT
GCACAGCATAACGGCGCGACGGTACTACTCCCGAACACGGCACCAAACTA
CCGTTAGCATGCATGGTCGATCGCGTGCTTCGCCAGTATCCTTGCTTCCC
CACGTAACATCATACCTCCGAACGTATTTTCAGCATCGAGCGATACGTAG
TCTTATACATACCATCGTCTACCACAACCCTGCCCTACCGCTCTCCAGCC
CGGACTACGTCTGCAGACATGTCTTCGCACTATTTCGTATACCACCACAC
ACTAAAACCCCGTCCGAAACAAAAAAAAAAACGGAGCAAAACAACGCAAC
AGCATCCAATGCTGCACCGCTACTTGCACGCGCGTATGCATACATGACCC
ATTTCCCACCCGTGTTACCGCAAAAGGATCATGACGATGGCTCGGCTGAC
ATCACGTCCTGCCCAAACAGTCGTAAACAGGCAAGCGCCCGGCCGATATC
ATCACGCTCCATCTCCACACTGTTGTCGAAGCGCGACGTAAAAAACGATA
GGCAACTTCGACGAAACCACATTGATATTACCCTCCCCCGCGCCCCGTTT
CCTTATGGCATGATAAAGGCTGCCGAATCCAGCTACCGAAATTCACTACC
GAATCACCGCCATCTCGATTTAGCAAAACCTGGCTTCCCTCGCTACCTCA
AAAACTCTCCGTCCGAGGAGAAATGGGCCTGAGAAATTTCGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:800185..800926+

>mRNA_D-herbacea_F_contig10.156.1 ID=mRNA_D-herbacea_F_contig10.156.1|Name=mRNA_D-herbacea_F_contig10.156.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1248bp|location=Sequence derived from alignment at D-herbacea_F_contig10:800185..800926+ (Desmarestia herbacea DmunF female)
ATGCATGGTCGATCGCGTGCTTCGCCAGTATCCTTGCTTCCCCACGTAAC
ATCATACCTCCGAACGTATTTTCAGCATCGAGCGATACGTAGTCTTATAC
ATACCATCGTCTACCACAACCCTGCCCTACCGCTCTCCAGCCCGGACTAC
GTCTGCAGACATGTCTTCGCACTATTTCGTATACCACCACACACTAAAAC
CCCGTCCGAAACAAAAAAAAAAACGGAGCAAAACAACGCAACAGCATCCA
ATGCTGCACCGCTACTTGCACGCGCGTATGCATACATGACCCATTTCCCA
CCCGTGTTACCGCAAAAGGATCATGACGATGGCTCGGCTGACATCACGTC
CTGCCCAAACAGTCGTAAACAGGCAAGCGCCCGGCCGATATCATCACGCT
CCATCTCCACACTGTTGTCGAAGCGCGACGTAAAAAACGATAGGCAACTT
CGACGAAACCACATTGATATTACCCTCCCCCGCGCCCCGTTTCCTTATGG
CATGATAAAGGCTGCCGAATCCAGCTACCGAAATTCACTACCGAATCACC
GCCATCTCGATTTAGCAAAACCTGGCTTCCCTCGCTACCTCAAAAACTCT
CCGTCCGAGGAGAAATGGGCCTGAATGCATGGTCGATCGCGTGCTTCGCC
AGTATCCTTGCTTCCCCACGTAACATCATACCTCCGAACGTATTTTCAGC
ATCGAGCGATACGTAGTCTTATACATACCATCGTCTACCACAACCCTGCC
CTACCGCTCTCCAGCCCGGACTACGTCTGCAGACATGTCTTCGCACTATT
TCGTATACCACCACACACTAAAACCCCGTCCGAAACAAAAAAAAAAACGG
AGCAAAACAACGCAACAGCATCCAATGCTGCACCGCTACTTGCACGCGCG
TATGCATACATGACCCATTTCCCACCCGTGTTACCGCAAAAGGATCATGA
CGATGGCTCGGCTGACATCACGTCCTGCCCAAACAGTCGTAAACAGGCAA
GCGCCCGGCCGATATCATCACGCTCCATCTCCACACTGTTGTCGAAGCGC
GACGTAAAAAACGATAGGCAACTTCGACGAAACCACATTGATATTACCCT
CCCCCGCGCCCCGTTTCCTTATGGCATGATAAAGGCTGCCGAATCCAGCT
ACCGAAATTCACTACCGAATCACCGCCATCTCGATTTAGCAAAACCTGGC
TTCCCTCGCTACCTCAAAAACTCTCCGTCCGAGGAGAAATGGGCCTGA
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