mRNA_D-herbacea_F_contig10.146.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI) HSP 1 Score: 312 bits (800), Expect = 3.970e-100 Identity = 191/328 (58.23%), Postives = 223/328 (67.99%), Query Frame = 3
Query: 150 DDGPHLVARHFSNGINNS-STTTTTAVAKINITRAAPVHGEEEDDSVGPVFSADTGAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAV-KRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQP---KLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMA---------GSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSEEAAIGRIVHVTAPTS 1091
++ P L+ARH+ + S + AV ++ ++EDDS+ VFSADTGAGRAHTPQRLNR R SS+L++ AAPVQ S+AT +RQP GRRKQRRWENDNLLGVEKFL GRHA EEGEAEHLTV +WRSSL LVSD AAEVRES R G+QP K S +RHF+GGKW+DAEERFLLVERRLRDIVVRALRN AL+ F+ GLETLL F + +Q + +MP+AL SALA+ P V + +E TLLVPLGPSPFHRLLLHALCQY+ LRSKSEE GRIV V PTS
Sbjct: 43 EEAPVLIARHYETRDDRQRSPSHGGAVESVHHHPDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPR----AAEVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQIL--TEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTS 364
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA) HSP 1 Score: 131 bits (329), Expect = 3.490e-31 Identity = 101/257 (39.30%), Postives = 141/257 (54.86%), Query Frame = 3
Query: 312 GAGRAHTPQRLN--RTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEA----------EHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
GAGRA TP R++ R TPQR +Y AAP+ +AA E R + + GRR+QRRW NDN G+ K + G +G + +HL++ SWRSSL LV+D+ + A +R + R+G P + + S + + G W+DAEERF + +RLRD+V ++L + L ++V +E L F+ R P P L+ AL P + AG + A L V L SPFHRLLLHA CQY L SKS+
Sbjct: 44 GAGRASTPVRVSGSRAVTPQR-----AVY--AAPI--AAAQEGRPSQHR--GRRRQRRWANDNFFGIHKAISG--GGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVD----APLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARAL--PPTTPDPLAEALRT-PLQLQAGPKGG--ARLGVALHDSPFHRLLLHAACQYHGLLSKSD 278
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD) HSP 1 Score: 102 bits (254), Expect = 1.130e-20 Identity = 79/251 (31.47%), Postives = 132/251 (52.59%), Query Frame = 3
Query: 297 FSADTGAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKG-LQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
S G+ RA TP + R+ TP+ + S L + P++++A + P+G+RKQ+RW ND+ G R E EH++++ WRS+ L QN E++ + RKG P E R W DAEE FL ++RR R ++VR+ ++ A SF+ +E ++ F++ R+ I++ + L + HP ++ SEK L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 77 LSNGNGSSRAKTP--VKRSTTPEASQRSKRLIN-INPIRSAAY--LSKPNELPVGQRKQQRWFNDHHFGNRVAT----TRLEDLMEHMSINVEWRSNFQKLAEPQNQ-----ELQTAFRKGKFTPSEQKGEPKLRRRDD---WNDAEEMFLRIDRRARTLLVRSFQSFA--SFIEAVEYVVLHFIQWREVPSEIEVASGLLR-VQTHPMELLKASEKD--VRLVIPLVDSAFHRLIIHSVCQFYGVRSRTE 305
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM) HSP 1 Score: 94.4 bits (233), Expect = 6.670e-18 Identity = 72/249 (28.92%), Postives = 126/249 (50.60%), Query Frame = 3
Query: 300 SADTGAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
S D G+ RA TPQ+ + R + ++S + S E+ P+G RKQ+RW ND+ G R E EH+ ++ WRS+ L QN E++ R+G + + +++ R+ +W DAE+ F V+RR R +++R+ + A F+ +E ++ F++ R+ +++ L L HP +M +EK L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 62 SNDNGSSRARTPQKRGSESPLARSKRLINIHSIRSAGYLSKPNEL------PVGVRKQQRWFNDHHFGNRAAS----TRLEDLMEHMDINVEWRSNFQKLAEPQNE-----ELQTEFRQGGGAR--ENRSNAPRNRRKDEWNDAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLK-HPIELMRANEKD--MRLILPLMDSAFHRLIIHSVCQFYGVRSRTE 288
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: D0MX30_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MX30_PHYIT) HSP 1 Score: 92.8 bits (229), Expect = 2.420e-17 Identity = 75/245 (30.61%), Postives = 127/245 (51.84%), Query Frame = 3
Query: 312 GAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
G+ RA TPQ+ R N RS L+ P+++ A + P+G RKQ+RW ND+ G R E EH+ +S WRS+ L QN +++ RKG ++++ + R+ +W DAE+ F V+RR R +++R+ + AL F+ +E ++ F++ R+ +++ L L HP +M +EK L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 70 GSSRARTPQK--RGNESPLARSKRLI--NIHPIRS--AGYLSKPNELPVGVRKQQRWFNDHHFGNRAAS----TRLEDLMEHMDISVEWRSNFQKLAEPQNE-----DLQIEFRKGGGARVNNR-PHAPRNRRTDEWNDAEQMFTRVDRRARTLMLRSFSSFAL--FIEAVEYVVLYFIQWREVPSELEIATPLFRMLK-HPIELMKANEKD--VRLILPLLDSAFHRLIIHSVCQFYGVRSRTE 293
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: A0A3M6VM59_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM59_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 9.010e-16 Identity = 72/245 (29.39%), Postives = 123/245 (50.20%), Query Frame = 3
Query: 312 GAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
G+ RA TPQ+ + P S S P+++ A + PLG RKQ+RW ND+ G R E EH+ ++ WRS+ L QN +++ R+G + ++ + R+ +W DAE F V+RR R +++R+ + A F+ +E ++ F++ ++ +++ A L L HP +M SEK L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 66 GSSRARTPQKRGSES----PLSRSKRLINIHPIRS--ARYLSKPNELPLGTRKQQRWYNDHHFGNRAAS----TRLEDLMEHMEINVKWRSNFQKLAEPQNE-----DLQTEFRQGGGVRENNF-FHAPRNRRKDEWNDAELMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWQEVPSELEVAAPLFFVLK-HPIELMKESEKD--VRLILPLLDSAFHRLIIHSVCQFYGIRSRTE 289
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: A0A2D4C6I2_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6I2_PYTIN) HSP 1 Score: 88.2 bits (217), Expect = 9.180e-16 Identity = 65/245 (26.53%), Postives = 120/245 (48.98%), Query Frame = 3
Query: 312 GAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
G+ RA TPQ+ + Q+ + ++ +P E+ P+G RK +RW ND+ G R E EH+T++ WRS+ L +N +++ + RKG + ++ D + + +W DAEE F ++RR R +++++ A SF+ +E ++ F++ ++ +++ L+S L V G L +PL S FHRL++H++CQ+ +RS++E
Sbjct: 69 GSSRAKTPQKRGXPSPLQKSKRLINIHPMRSPAYLPKPNEL------PVGVRKXQRWFNDHHFGNRAAS----TRLEDLMEHMTINVEWRSNFQKLAEPENK-----DLQTAFRKG-RIQVDDHARNQPKFRRKDEWNDAEEMFTRIDRRARTLLLQSFTKFA--SFIEAVEYVVLHFIQWKELPSELEVSMGLNSLLVTPMEVATFGEND---VRLCMPLADSAFHRLMIHSVCQFYGVRSRTE 292
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: A0A3F2RXZ1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXZ1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 9.350e-16 Identity = 70/245 (28.57%), Postives = 125/245 (51.02%), Query Frame = 3
Query: 312 GAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
G+ RA TPQ+ + P + S P+++ A + P+G RKQ+RW ND+ G R E EH+ ++ WRS+ L QN +++ + RKG + + +++SR +W DAE+ F V+RR R +++R+ + A F+ +E ++ F++ R+ +++ L L HP ++ EK L++PL S FHRL++H++CQ+ ++RS++E
Sbjct: 67 GSSRARTPQKRGGES----PLARSKRLINIHPIRS--AGYLSKPNELPVGVRKQQRWFNDHHFGNRAAS----TRLEDLMEHMDINVEWRSNFQKLAEPQNE-----DLQTAFRKG-EGSHENNRSNASRCRRKDEWNDAEQMFSRVDRRARTLMLRSFHSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLLRMLK-HPIELLRVGEKD--VRLVLPLLDSAFHRLIIHSVCQFYSVRSRTE 290
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: A0A0P1ADC5_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADC5_PLAHL) HSP 1 Score: 87.4 bits (215), Expect = 1.720e-15 Identity = 69/245 (28.16%), Postives = 123/245 (50.20%), Query Frame = 3
Query: 312 GAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
G+ RA TPQ+ + + +R + ++ +P + PLG RKQ+RW ND+ G R E EHL ++ W+S+ L QN S ++ + G + + A +R + +W DAE+ F V+RR R +++R+ + A F+ +E ++ F++ R+ +++ A L+ L HP ++ SE L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 69 GSSRARTPQKRSSNSPLERSKRLINIHPICSPSYLIKPNIL------PLGVRKQQRWFNDHHFGNRAAS----TRLEDLLEHLDINVEWKSNFKKLAEPQNESL----QKKFLNGGGAYESIQSHAPWNRRYD--EWNDAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVAAPLTRMLK-HPIELIQASEND--VRLILPLLDSAFHRLIVHSVCQFYGVRSRTE 292
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Match: G4YQC7_PHYSP (R3H domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YQC7_PHYSP) HSP 1 Score: 87.4 bits (215), Expect = 1.750e-15 Identity = 70/245 (28.57%), Postives = 122/245 (49.80%), Query Frame = 3
Query: 312 GAGRAHTPQRLNRTNTPQRPRSSSLLYSGAAPVQASAATEMRAVKRQPLGRRKQRRWENDNLLGVEKFLHGRHAREEGEAEHLTVSTSWRSSLSVLVSDQNNSAGAAEVRESIRKGLQPKLSDTEASSSRHFSGGKWQDAEERFLLVERRLRDIVVRALRNSALLSFVVGLETLLEAFVKHRQAMGPIDMPAALSSALAAHPTVVMAGSEKSPIATLLVPLGPSPFHRLLLHALCQYRNLRSKSE 1046
G+ RA TPQ+ + P + S P+++ A + P+G RKQ+RW ND+ G R E EH+ ++ WRS+ L QN +++ RKG + + + R+ +W +AE+ F V+RR R +++R+ + A F+ +E ++ F++ R+ +++ L L HP +M SEK L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 69 GSSRARTPQKRGSES----PLARSKRLINIHPIRS--AGYLSKPNELPVGVRKQQRWFNDHHFGNRAAS----TRLEDLMEHMDINVEWRSNFQKLAEPQNE-----DLQTEFRKGGGAQ-ENNRPHAPRNRRKDEWNEAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLK-HPIELMRASEKD--VRLILPLLDSAFHRLIVHSVCQFYGVRSRTE 292 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig10.146.1 >prot_D-herbacea_F_contig10.146.1 ID=prot_D-herbacea_F_contig10.146.1|Name=mRNA_D-herbacea_F_contig10.146.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=343bp MPANTLENYPERNGSSSIGVGFADDGPHLVARHFSNGINNSSTTTTTAVAback to top mRNA from alignment at D-herbacea_F_contig10:683762..693228- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig10.146.1 ID=mRNA_D-herbacea_F_contig10.146.1|Name=mRNA_D-herbacea_F_contig10.146.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=9467bp|location=Sequence derived from alignment at D-herbacea_F_contig10:683762..693228- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig10:683762..693228- >mRNA_D-herbacea_F_contig10.146.1 ID=mRNA_D-herbacea_F_contig10.146.1|Name=mRNA_D-herbacea_F_contig10.146.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2058bp|location=Sequence derived from alignment at D-herbacea_F_contig10:683762..693228- (Desmarestia herbacea DmunF female)back to top |