mRNA_D-herbacea_F_contig1.124.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.124.1
Unique NamemRNA_D-herbacea_F_contig1.124.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:3215098..3217198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000100.1
Exons3
Model size570
Cds size570
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.124.1prot_D-herbacea_F_contig1.124.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 3215098..3217198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.0800726-CDS-D-herbacea_F_contig1:3215097..32153791622927398.0800726-CDS-D-herbacea_F_contig1:3215097..3215379Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3215098..3215379 -
1690790147.8485394-CDS-D-herbacea_F_contig1:3215097..32153791690790147.8485394-CDS-D-herbacea_F_contig1:3215097..3215379Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3215098..3215379 -
1622927398.0886283-CDS-D-herbacea_F_contig1:3215986..32161211622927398.0886283-CDS-D-herbacea_F_contig1:3215986..3216121Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3215987..3216121 -
1690790147.8596568-CDS-D-herbacea_F_contig1:3215986..32161211690790147.8596568-CDS-D-herbacea_F_contig1:3215986..3216121Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3215987..3216121 -
1622927398.0996962-CDS-D-herbacea_F_contig1:3217045..32171981622927398.0996962-CDS-D-herbacea_F_contig1:3217045..3217198Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3217046..3217198 -
1690790147.8673577-CDS-D-herbacea_F_contig1:3217045..32171981690790147.8673577-CDS-D-herbacea_F_contig1:3217045..3217198Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3217046..3217198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.124.1

>prot_D-herbacea_F_contig1.124.1 ID=prot_D-herbacea_F_contig1.124.1|Name=mRNA_D-herbacea_F_contig1.124.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=190bp
IAASSAFQGALRAMVSVPLAGKTMSNSLVEQTTVNNAVPISTLRGAGDAA
SLSGNGNTTRSSLISRCVLWFLLVIGALLFGAGTAQAIVASELHSKGIQV
LKYWFAEGPHMIAGDRIIGILACAVGMIVFLVACRIAYLSKRSSSRCIFN
VLWIILSLLAISGIIVTAVIRSFSERESKAEKSIILTESR
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mRNA from alignment at D-herbacea_F_contig1:3215098..3217198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.124.1 ID=mRNA_D-herbacea_F_contig1.124.1|Name=mRNA_D-herbacea_F_contig1.124.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2101bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3215098..3217198- (Desmarestia herbacea DmunF female)
ATAGCAGCCAGCAGCGCCTTTCAAGGTGCACTACGAGCAATGGTATCAGT
CCCATTGGCAGGGAAAACCATGTCGAATTCGCTGGTGGAGCAGACTACTG
TTAATAACGCCGTTCCTATCAGCACCCTGCGGGGAGCTGGTGATGCTGCC
TCGGTGAGTCTGAATACGCAGTCATATTATTATTTCACGAGTACGATGTG
GTCGTGTGTTCTTGTGTGTGTTTCTTTTACCCACATTGTCTGCTGGATGA
TGAGCGCTATTGGACAAGTGCACAGGCAACTTATCCACTGCGAACTACGA
GTGGTGCAACCATCTTCACAACCGAATATATGACCCACGACCCAGTTTGT
TATCACCTAGCCGCGTCTTTCACACACAGTAGCACACACATTCTTAGTAG
GTGTAGTATTGACTCGATGTGGTGTCACAACTACCAAACACGATGCGGAC
AGATTGCATGCATAGCGGTCGTTGTTCCCGTGCCTCAGGACTCAGGACGT
TGTTCGCAGACTACTGCTGCTGTTATATTGCAGGATGGCGAAACCGATCA
AATTATATTGCTTTAATTGCGCATCATGAGGTGCAGGCTCCATTGCTGTT
AGTTTGGGACGTCATATGATTCGTGTTGTTGCTGGAGATACTGTAGATGT
GTCACGGGTGTCAGAACTAACTATTAATACTAGCTCGTATCTGATTTTAT
TCGTTTGTCGTTCTTTGTGGAAAGGCACGCCCTGTTTCCCCAACATCGTG
GGTTCGAGTCCCGGTCAACACAAAAGGGAACTGTTGTTCTGTGCCATATC
CCGTCGCGGAAAGCGTGAGGTTGTGAGTAAGCACACTTCCATGAAAGTCG
ACAAACTATGGGTACAGAAGGGAAGCCTCCTGTGATTATGGCTTGTTCAG
ACAAGCGCGTTAAGCGCTGAGCTCCTGTGGGCTGGAGGGCTGGTAAGATA
ACATGATGGATACTGTACACAACAGTGTAGAACTATTGTATGACGTACGA
ATAACAAATTAAGGGGACTTGATCTGCGCGGCGTTTAGCTATGAATGTGT
ACCCGCCCTCGCCCTGAACGCCACCAGCTCTCAGGCAATGGTAATACAAC
ACGATCATCGTTGATCAGTCGTTGTGTGCTGTGGTTCTTGCTGGTCATTG
GGGCGCTCCTGTTCGGGGCTGGCACGGCACAGGCGATCGTCGCTAGTGAG
CTTCACTCCAAGGCAAGACATACATACTGGCAATGTATTATTGTGGAGGC
GATGATAAGGAGAGAGGTATACCTCTCGAGGGGGCAAAACTGTTGTTCCA
CAAGCCCGGCAAGCCTTTTGAACCGACCCCAAATAGTGCCCAAATTCGCC
GTGATTCATGAACCGTGGAGTCTTCAATATTTTTTTTTGCCGGCGCGTGA
CACGGAGCTTTCGATCGGCCAAACATCATCTTGTTCGATGGGACCGGAAT
GAAAGTACGATACTGTATTCGTACTATTATGATATTTACAGTAGCACGCA
CATGTTATAGCACCCGTTGAACTTTTTTCGCTTGATATGCAGAACGGTGA
AAATACAGATACAACGCTGGATATGACGCGTGAAGCCTTATTTGCGCGTG
CACTTTATACCTAGTTGGTTTGAGGTGACCGCGTGTATTGGGGCAGTTTG
GTTTCATGGCGGCCGCACTAGCAAGAACCACACAACGTGCACACACATAG
GTAGAACCCAGATATCACAACTATCAACGCCAATATATGCAATGTATATC
ATGGTTTCTGAAAGCAAGCAAAATGCACGCGATGCAACTCCCGACCTTAC
CCTCCGCTCTCTATCGCAGGGAATACAAGTACTCAAATACTGGTTTGCCG
AAGGTCCCCACATGATAGCCGGGGATCGAATCATCGGCATTCTAGCGTGT
GCAGTGGGGATGATCGTGTTCCTCGTTGCGTGCCGCATCGCCTATTTGTC
CAAGCGCAGCTCTTCTCGTTGCATATTCAACGTACTCTGGATAATATTGT
CGCTCCTGGCGATAAGTGGTATCATTGTTACCGCCGTCATCAGGAGTTTC
AGCGAGCGCGAAAGTAAGGCTGAAAAGAGTATTATACTGACGGAATCTCG
G
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:3215098..3217198-

>mRNA_D-herbacea_F_contig1.124.1 ID=mRNA_D-herbacea_F_contig1.124.1|Name=mRNA_D-herbacea_F_contig1.124.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1140bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3215098..3217198- (Desmarestia herbacea DmunF female)
ATAGCAGCCAGCAGCGCCTTTCAAGGTGCACTACGAGCAATGGTATCAGT
CCCATTGGCAGGGAAAACCATGTCGAATTCGCTGGTGGAGCAGACTACTG
TTAATAACGCCGTTCCTATCAGCACCCTGCGGGGAGCTGGTGATGCTGCC
TCGATAGCAGCCAGCAGCGCCTTTCAAGGTGCACTACGAGCAATGGTATC
AGTCCCATTGGCAGGGAAAACCATGTCGAATTCGCTGGTGGAGCAGACTA
CTGTTAATAACGCCGTTCCTATCAGCACCCTGCGGGGAGCTGGTGATGCT
GCCTCGCTCTCAGGCAATGGTAATACAACACGATCATCGTTGATCAGTCG
TTGTGTGCTGTGGTTCTTGCTGGTCATTGGGGCGCTCCTGTTCGGGGCTG
GCACGGCACAGGCGATCGTCGCTAGTGAGCTTCACTCCAAGCTCTCAGGC
AATGGTAATACAACACGATCATCGTTGATCAGTCGTTGTGTGCTGTGGTT
CTTGCTGGTCATTGGGGCGCTCCTGTTCGGGGCTGGCACGGCACAGGCGA
TCGTCGCTAGTGAGCTTCACTCCAAGGGAATACAAGTACTCAAATACTGG
TTTGCCGAAGGTCCCCACATGATAGCCGGGGATCGAATCATCGGCATTCT
AGCGTGTGCAGTGGGGATGATCGTGTTCCTCGTTGCGTGCCGCATCGCCT
ATTTGTCCAAGCGCAGCTCTTCTCGTTGCATATTCAACGTACTCTGGATA
ATATTGTCGCTCCTGGCGATAAGTGGTATCATTGTTACCGCCGTCATCAG
GAGTTTCAGCGAGCGCGAAAGTAAGGCTGAAAAGAGTATTATACTGACGG
AATCTCGGGGAATACAAGTACTCAAATACTGGTTTGCCGAAGGTCCCCAC
ATGATAGCCGGGGATCGAATCATCGGCATTCTAGCGTGTGCAGTGGGGAT
GATCGTGTTCCTCGTTGCGTGCCGCATCGCCTATTTGTCCAAGCGCAGCT
CTTCTCGTTGCATATTCAACGTACTCTGGATAATATTGTCGCTCCTGGCG
ATAAGTGGTATCATTGTTACCGCCGTCATCAGGAGTTTCAGCGAGCGCGA
AAGTAAGGCTGAAAAGAGTATTATACTGACGGAATCTCGG
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