mRNA_D-herbacea_F_contig1.10.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.10.1
Unique NamemRNA_D-herbacea_F_contig1.10.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:188865..189436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size572
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.10.1prot_D-herbacea_F_contig1.10.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 188885..189226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.534318-UTR-D-herbacea_F_contig1:188864..1888841622927383.534318-UTR-D-herbacea_F_contig1:188864..188884Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 188865..188884 +
1690790135.5994399-UTR-D-herbacea_F_contig1:188864..1888841690790135.5994399-UTR-D-herbacea_F_contig1:188864..188884Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 188865..188884 +
1622927383.5569363-UTR-D-herbacea_F_contig1:189226..1894361622927383.5569363-UTR-D-herbacea_F_contig1:189226..189436Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 189227..189436 +
1690790135.655749-UTR-D-herbacea_F_contig1:189226..1894361690790135.655749-UTR-D-herbacea_F_contig1:189226..189436Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 189227..189436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.5448492-CDS-D-herbacea_F_contig1:188884..1892261622927383.5448492-CDS-D-herbacea_F_contig1:188884..189226Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 188885..189226 +
1690790135.6330872-CDS-D-herbacea_F_contig1:188884..1892261690790135.6330872-CDS-D-herbacea_F_contig1:188884..189226Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 188885..189226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.10.1

>prot_D-herbacea_F_contig1.10.1 ID=prot_D-herbacea_F_contig1.10.1|Name=mRNA_D-herbacea_F_contig1.10.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=114bp
MAHCHRSGFCFRPRHSKPLEPWRRSDQPLFFGAATTIATHVAPLHAGMQV
KVKYVGPRVFDETLHCCCRVSPLRGSGIPLGIVADNLDTALVLCFEAWYW
CVWRGRATHHQQG*
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mRNA from alignment at D-herbacea_F_contig1:188865..189436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.10.1 ID=mRNA_D-herbacea_F_contig1.10.1|Name=mRNA_D-herbacea_F_contig1.10.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=572bp|location=Sequence derived from alignment at D-herbacea_F_contig1:188865..189436+ (Desmarestia herbacea DmunF female)
GCTATTATCCGCCGTACTGGATGGCTCACTGTCACCGCAGCGGCTTCTGC
TTCCGCCCACGCCACTCCAAACCCCTCGAGCCATGGCGGCGCTCCGACCA
ACCCCTCTTCTTCGGTGCTGCTACTACTATTGCCACCCATGTCGCGCCCC
TCCACGCGGGTATGCAGGTCAAGGTGAAATATGTTGGACCCCGTGTCTTT
GATGAGACTTTGCACTGTTGTTGTAGAGTTTCCCCCCTGAGAGGCAGCGG
GATCCCGCTCGGTATCGTTGCTGACAATTTGGATACTGCTCTGGTGCTGT
GTTTCGAGGCTTGGTATTGGTGTGTCTGGAGAGGACGTGCTACACACCAC
CAGCAGGGGTAGCGCCGTGCACGATAGCAACACGCGACGCAAACTCGGCG
ACATCTCTACGGCAGTAGCGTTGTATTCAGATGCGGCCCTCCTCCTTCAA
GGTCGCGGTTGGTTTACCAGTGAGTGGACACGAAGGACCACCAGGAACTT
TCCAGCCGCAGGTGTTTGTCAAAAAGGGGACAAACCCCCCTCTTTAGCCA
ATTTTCAAGACTTGGTTAACGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:188865..189436+

>mRNA_D-herbacea_F_contig1.10.1 ID=mRNA_D-herbacea_F_contig1.10.1|Name=mRNA_D-herbacea_F_contig1.10.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=684bp|location=Sequence derived from alignment at D-herbacea_F_contig1:188865..189436+ (Desmarestia herbacea DmunF female)
ATGGCTCACTGTCACCGCAGCGGCTTCTGCTTCCGCCCACGCCACTCCAA
ACCCCTCGAGCCATGGCGGCGCTCCGACCAACCCCTCTTCTTCGGTGCTG
CTACTACTATTGCCACCCATGTCGCGCCCCTCCACGCGGGTATGCAGGTC
AAGGTGAAATATGTTGGACCCCGTGTCTTTGATGAGACTTTGCACTGTTG
TTGTAGAGTTTCCCCCCTGAGAGGCAGCGGGATCCCGCTCGGTATCGTTG
CTGACAATTTGGATACTGCTCTGGTGCTGTGTTTCGAGGCTTGGTATTGG
TGTGTCTGGAGAGGACGTGCTACACACCACCAGCAGGGGTAGATGGCTCA
CTGTCACCGCAGCGGCTTCTGCTTCCGCCCACGCCACTCCAAACCCCTCG
AGCCATGGCGGCGCTCCGACCAACCCCTCTTCTTCGGTGCTGCTACTACT
ATTGCCACCCATGTCGCGCCCCTCCACGCGGGTATGCAGGTCAAGGTGAA
ATATGTTGGACCCCGTGTCTTTGATGAGACTTTGCACTGTTGTTGTAGAG
TTTCCCCCCTGAGAGGCAGCGGGATCCCGCTCGGTATCGTTGCTGACAAT
TTGGATACTGCTCTGGTGCTGTGTTTCGAGGCTTGGTATTGGTGTGTCTG
GAGAGGACGTGCTACACACCACCAGCAGGGGTAG
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