mRNA_D-dudresnayi_contig10448.488.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10448.488.1
Unique NamemRNA_D-dudresnayi_contig10448.488.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10448.488.1 vs. uniprot
Match: D8LQU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.240e-9
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:  280 ESQNVSIKCATGTVENNS--ITLETFLTSRELQMGHVDIVWAGDLSWEIETRTESQGFREVSSAGEDNVIFAVTGVFLLISVLFISRTSNCCCRTVRGEIDLVAANDFFSTMGSLVERLAVVLIVGQASVYFKLS 678
            +S  VS++CA GT+++ +  +TL  FL S  LQ   V +V AG+  WE E    ++ F +    GED +     G+ +L+ V+  +    CC     G+I        F+T GSLV R+A+VLI  Q S++   S
Sbjct:    5 DSPFVSLQCAEGTLDDGAPEVTLANFLASPGLQADRVHVVGAGEFPWETEEEITTEFFTDQEWEGEDALTLFALGL-VLVGVVVGAICEQCCSD---GKISRNVGA--FATAGSLVGRIALVLITAQGSIFLATS 133
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10448.488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQU7_ECTSI2.240e-934.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10448contigD-dudresnayi_contig10448:3665..5080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size944
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10448.488.1prot_D-dudresnayi_contig10448.488.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10448 3734..4985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.192905-UTR-D-dudresnayi_contig10448:3664..37331622927546.192905-UTR-D-dudresnayi_contig10448:3664..3733Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10448 3665..3733 +
1690556801.4041138-UTR-D-dudresnayi_contig10448:3664..37331690556801.4041138-UTR-D-dudresnayi_contig10448:3664..3733Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10448 3665..3733 +
1622927546.2295637-UTR-D-dudresnayi_contig10448:4985..50801622927546.2295637-UTR-D-dudresnayi_contig10448:4985..5080Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10448 4986..5080 +
1690556801.426067-UTR-D-dudresnayi_contig10448:4985..50801690556801.426067-UTR-D-dudresnayi_contig10448:4985..5080Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10448 4986..5080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.2036152-CDS-D-dudresnayi_contig10448:3733..40361622927546.2036152-CDS-D-dudresnayi_contig10448:3733..4036Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 3734..4036 +
1690556801.4117188-CDS-D-dudresnayi_contig10448:3733..40361690556801.4117188-CDS-D-dudresnayi_contig10448:3733..4036Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 3734..4036 +
1622927546.2185585-CDS-D-dudresnayi_contig10448:4508..49851622927546.2185585-CDS-D-dudresnayi_contig10448:4508..4985Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 4509..4985 +
1690556801.418986-CDS-D-dudresnayi_contig10448:4508..49851690556801.418986-CDS-D-dudresnayi_contig10448:4508..4985Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10448 4509..4985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10448.488.1

>prot_D-dudresnayi_contig10448.488.1 ID=prot_D-dudresnayi_contig10448.488.1|Name=mRNA_D-dudresnayi_contig10448.488.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=260bp
MRTWDQDVHHSLAQSVAIGILESAVMGTFFTNGLSGNPYLSAHTVNDDLS
PPALLSAVALATANNRSITTESQNVSIKCATGTVENNSITLETFLTSREL
QMGHVDIVWAGDLSWEIETRTESQGFREVSSAGEDNVIFAVTGVFLLISV
LFISRTSNCCCRTVRGEIDLVAANDFFSTMGSLVERLAVVLIVGQASVYF
KLSVHEDASGKNNDLTSAVASVYKIISWTLLLLIFFGDAIFAPECWFPSG
RVISYPRKE*
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mRNA from alignment at D-dudresnayi_contig10448:3665..5080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10448.488.1 ID=mRNA_D-dudresnayi_contig10448.488.1|Name=mRNA_D-dudresnayi_contig10448.488.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1416bp|location=Sequence derived from alignment at D-dudresnayi_contig10448:3665..5080+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTCTTGGTGCACGTCTCTCCATGCCTAACACCATACTCTGAACTCCAGTC
GCATAAGGAGAAAACTGGTATGAGGACCTGGGACCAAGACGTCCACCACA
GCCTGGCTCAGAGCGTCGCGATAGGCATCCTGGAAAGCGCGGTGATGGGC
ACGTTCTTCACAAACGGCCTCAGCGGGAATCCTTATCTCAGCGCACACAC
AGTCAACGATGATTTGAGCCCGCCCGCGCTTCTGAGCGCCGTGGCCCTGG
CGACTGCAAACAACCGATCCATCACCACGGAATCGCAAAACGTCTCAATC
AAATGCGCAACCGGCACCGTAGAAAATAACAGCATCACCCTAGAGACGTT
CTTGACTTCGCGGGAGCTACAGGTGAGCTCCAACTGATGCTAGATTCCCC
TAGAAACATGAAGTAATGCATCTTTGCTGTGGCCACAACCGTATTGGCAT
TATGCCTATTACATGTGCAGTCTTCGGTTCCTTGTCTTGTTACATCCCTG
TGGTGCACACCCAACGCCAGAAACTGCTAAAATATGTGCCTGCCCTCATA
TACATATACTAAGAATTCCTTAAGTATGAAAATCGCGTTGATGGGGCGTA
ACCCCCCAAAATTTATCCTGTAGAGCCTCTGGGACATCCCAGGGGAGGCG
CTGCGTTAAAACTTAATATGAAGAACGATATAATCCGCGCGACCGATGTA
TCACACAGTGAGGTTGACGATTGTCCCCTGGCCCCCCAACCAGTTTGGAA
CGTAACGGCTGATGATGTCTTTGTAAGTTAAAATAAACAATCTGAAGGTG
CAAACACGCTGCCAACCCATTGCACTCGGAAATTTGCGCCACAGATGGGC
CACGTGGACATTGTATGGGCTGGCGACCTATCCTGGGAGATTGAGACGAG
AACTGAATCTCAGGGATTCAGGGAAGTTTCCAGCGCAGGAGAAGACAATG
TCATTTTCGCCGTCACAGGGGTGTTCCTACTCATATCAGTGCTCTTCATT
AGCCGTACGAGTAACTGCTGCTGTAGAACAGTACGCGGTGAAATTGACCT
GGTCGCAGCAAATGACTTTTTTAGCACCATGGGGTCACTGGTGGAACGTC
TTGCAGTGGTGCTTATTGTCGGCCAAGCTTCGGTATACTTCAAGCTCAGC
GTTCACGAGGACGCTTCCGGGAAAAATAACGATTTGACCAGCGCAGTGGC
TTCCGTTTACAAAATCATATCGTGGACGCTCCTCCTACTGATTTTCTTCG
GAGATGCGATTTTTGCTCCGGAATGTTGGTTTCCAAGCGGTCGGGTTATT
TCCTATCCACGGAAGGAGTGAGAGACTGCTGCGTGTTGCTCGCTAGAGCA
AACGCGCTGACCAGCCACAGTAGTGCATATGTCTTGGGGCCGCAGAAACG
TTGCACGATCGGTACG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10448:3665..5080+

>mRNA_D-dudresnayi_contig10448.488.1 ID=mRNA_D-dudresnayi_contig10448.488.1|Name=mRNA_D-dudresnayi_contig10448.488.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at D-dudresnayi_contig10448:3665..5080+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAGGACCTGGGACCAAGACGTCCACCACAGCCTGGCTCAGAGCGTCGC
GATAGGCATCCTGGAAAGCGCGGTGATGGGCACGTTCTTCACAAACGGCC
TCAGCGGGAATCCTTATCTCAGCGCACACACAGTCAACGATGATTTGAGC
CCGCCCGCGCTTCTGAGCGCCGTGGCCCTGGCGACTGCAAACAACCGATC
CATCACCACGGAATCGCAAAACGTCTCAATCAAATGCGCAACCGGCACCG
TAGAAAATAACAGCATCACCCTAGAGACGTTCTTGACTTCGCGGGAGCTA
CAGATGAGGACCTGGGACCAAGACGTCCACCACAGCCTGGCTCAGAGCGT
CGCGATAGGCATCCTGGAAAGCGCGGTGATGGGCACGTTCTTCACAAACG
GCCTCAGCGGGAATCCTTATCTCAGCGCACACACAGTCAACGATGATTTG
AGCCCGCCCGCGCTTCTGAGCGCCGTGGCCCTGGCGACTGCAAACAACCG
ATCCATCACCACGGAATCGCAAAACGTCTCAATCAAATGCGCAACCGGCA
CCGTAGAAAATAACAGCATCACCCTAGAGACGTTCTTGACTTCGCGGGAG
CTACAGATGGGCCACGTGGACATTGTATGGGCTGGCGACCTATCCTGGGA
GATTGAGACGAGAACTGAATCTCAGGGATTCAGGGAAGTTTCCAGCGCAG
GAGAAGACAATGTCATTTTCGCCGTCACAGGGGTGTTCCTACTCATATCA
GTGCTCTTCATTAGCCGTACGAGTAACTGCTGCTGTAGAACAGTACGCGG
TGAAATTGACCTGGTCGCAGCAAATGACTTTTTTAGCACCATGGGGTCAC
TGGTGGAACGTCTTGCAGTGGTGCTTATTGTCGGCCAAGCTTCGGTATAC
TTCAAGCTCAGCGTTCACGAGGACGCTTCCGGGAAAAATAACGATTTGAC
CAGCGCAGTGGCTTCCGTTTACAAAATCATATCGTGGACGCTCCTCCTAC
TGATTTTCTTCGGAGATGCGATTTTTGCTCCGGAATGTTGGTTTCCAAGC
GGTCGGGTTATTTCCTATCCACGGAAGGAGTGAATGGGCCACGTGGACAT
TGTATGGGCTGGCGACCTATCCTGGGAGATTGAGACGAGAACTGAATCTC
AGGGATTCAGGGAAGTTTCCAGCGCAGGAGAAGACAATGTCATTTTCGCC
GTCACAGGGGTGTTCCTACTCATATCAGTGCTCTTCATTAGCCGTACGAG
TAACTGCTGCTGTAGAACAGTACGCGGTGAAATTGACCTGGTCGCAGCAA
ATGACTTTTTTAGCACCATGGGGTCACTGGTGGAACGTCTTGCAGTGGTG
CTTATTGTCGGCCAAGCTTCGGTATACTTCAAGCTCAGCGTTCACGAGGA
CGCTTCCGGGAAAAATAACGATTTGACCAGCGCAGTGGCTTCCGTTTACA
AAATCATATCGTGGACGCTCCTCCTACTGATTTTCTTCGGAGATGCGATT
TTTGCTCCGGAATGTTGGTTTCCAAGCGGTCGGGTTATTTCCTATCCACG
GAAGGAGTGA
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