mRNA_D-dudresnayi_contig10440.478.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10440.478.1
Unique NamemRNA_D-dudresnayi_contig10440.478.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10440.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10440contigD-dudresnayi_contig10440:1294..7187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size309
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10440.478.1prot_D-dudresnayi_contig10440.478.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10440 1294..7080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.4638603-CDS-D-dudresnayi_contig10440:1293..13641622927545.4638603-CDS-D-dudresnayi_contig10440:1293..1364Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10440 1294..1364 +
1690556801.0549026-CDS-D-dudresnayi_contig10440:1293..13641690556801.0549026-CDS-D-dudresnayi_contig10440:1293..1364Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10440 1294..1364 +
1622927545.479394-CDS-D-dudresnayi_contig10440:4674..47741622927545.479394-CDS-D-dudresnayi_contig10440:4674..4774Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10440 4675..4774 +
1690556801.0646837-CDS-D-dudresnayi_contig10440:4674..47741690556801.0646837-CDS-D-dudresnayi_contig10440:4674..4774Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10440 4675..4774 +
1622927545.4913485-CDS-D-dudresnayi_contig10440:7050..70801622927545.4913485-CDS-D-dudresnayi_contig10440:7050..7080Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10440 7051..7080 +
1690556801.0747588-CDS-D-dudresnayi_contig10440:7050..70801690556801.0747588-CDS-D-dudresnayi_contig10440:7050..7080Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10440 7051..7080 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.5025222-UTR-D-dudresnayi_contig10440:7080..71871622927545.5025222-UTR-D-dudresnayi_contig10440:7080..7187Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10440 7081..7187 +
1690556801.0829852-UTR-D-dudresnayi_contig10440:7080..71871690556801.0829852-UTR-D-dudresnayi_contig10440:7080..7187Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10440 7081..7187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10440.478.1

>prot_D-dudresnayi_contig10440.478.1 ID=prot_D-dudresnayi_contig10440.478.1|Name=mRNA_D-dudresnayi_contig10440.478.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=67bp
IGKHWALNSTTCQSFEPNELHSSRSYRVLCGAHGAYERWYSCMSHIGSSA
VHKKTARVYRAATGRV*
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mRNA from alignment at D-dudresnayi_contig10440:1294..7187+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10440.478.1 ID=mRNA_D-dudresnayi_contig10440.478.1|Name=mRNA_D-dudresnayi_contig10440.478.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5894bp|location=Sequence derived from alignment at D-dudresnayi_contig10440:1294..7187+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATCGGCAAGCACTGGGCGCTCAACAGCACAACATGTCAGTCTTTCGAACC
CAATGAACTGCATTCCTCACGGTATGTACCCCTCGAATTGAGGGTGAGCC
TTCTATTATATGTGCGAGCCTGCTATTATATGACTACGGAGACCCGCGGT
ATTCTCCTTGTAGCACATGATCTGCCTCACATGGCATGCCGCTGTCTAGA
ATTACCCACGAGGAATCGCTGTTCGCAATATGGTTTCCAATCCGAGACGA
TGCATGCGTCGTTGCGCTAAGCAGCTATAGCCTGGTTTGCCTCTGCTGTG
TGTGTTGCTTGTTTGGTGATGAAAGATGATTCGAGCATTTCCATGTATGT
GATATGCTGACTACTACTACTACTACTGTGCATGGTCGACTGTGAGAGAA
CCAACAATGTAGAGAGGTGTGTTTGTTTCGCCATTCCCATGTCACGATGA
CTGCACACAACACATGTCTGGGCTCGCGCGTGCCGCTTTCCCAGCAGCTA
TGATACCTCATGCCACGCACTTGCTGCACTCGGCCTGGTTGTTGTCTAAA
TAATGTATTATGGGATTGTAGACTAGTAGTGATGCACCATGTTTATGCAT
TTATTTTTACTGGTCGATTTTCCAGGGTCATATGATATGTACTATTAATA
CTGTACTGCAACTACTACTGACTGTTGTATCATACGACACGTCAACATCG
CTTGCACGTACTCGTAGTAGAAATGTGGTACACGTGGTTGTTGCTGTAGT
GAATAGTGCGCCGCAGTAATCGTTGTTACATACTATGCGATGGGCTCCAT
GAGCGTTCTTCAGGTGGCATCAGTATACAAGGTATGTATTACACATGTAC
ACCCATGTATCGCTATAGATGGTGTGTCATAGTAGAACAGTCAGTAGGTG
TTGTATGATAACACAGACCTATGATATGCTCTATACTCGTACTCCAATCT
GTAAGACAGATGGTAGTACTTGTACATAAAATGCATTTATTGTAGACTAC
TCGTAGACAACAGACCTATGATAGGCTCTATATTACGGTACTGTTGTAGT
ACCCCTCTCTGCGAGACAGACAGGAGTACTATACGAGTACCACCTTTGAT
TTTTTAATACTACTACGATATACTTACGTAGTAGTACTATTGTATGTACT
ATGCACCATATTATACGAATTGCACCTCTGAGACCAAGTTTTGTTTTCAG
CCGTATGGAGATCGTCACACTATTTACTACGTCTACGGCGGCAGCTACAC
TGACACTACTGCTACTACTGTTGTAGTGTTACATGTTTTTCTCGCATCAC
AACCATCCCCGCATTAGATCTATGATATGTGTTCCCATTATTGCAAAGGA
ACCTTTCGGACAAGTGTGGAGTGTGGATACATGTGATTTGTTTTGCCTGT
GGCTCTGCCCGGTGGATTGGCTTCGTCTGCTCGCTGCTGGGGCCAGACTT
CTTCTGCCCTTCTCAGCTCGAAGATCTTCAACATTTATGTCCATCTTTTT
TTAATGTTTTTGTCGATATTTTGTTCACTTTGTTATATTGATACCATGCA
GCACCAAAGAGGTATTATTGCTCGTAGTGTGATGCGAGCGTTATCTTTTT
ATGGAGGATTGGGTTTGGTCCTTGTTTTCGTATAAGTCATTTTCCCGTCA
CTACGACGAAAATATAAAAATCCACATAAAACCACATATATACTAGGCAT
CATACATGATGGGTTCACCTGTAACAATTAATTGCGTGTGAGGTTTTTGT
TGCACTTTGTTTTGTTATGAAACGGGGCGTGATAGTTGCCTCAGTCCTTT
CCGTAGCTCGTGTGTTACTATTTTTTATTTTTATATCATTACTAGGATTA
CGCTACATTCTTTCTTCTCACACAAACATTAAAACATTACCACCGTAGAC
TACATATATATATATATGTACATACAAGACGATAAGATTGACCGTCCTCG
CTCCATAATTAGGGATGGGAGGGGCTTGTTTCAGCAATTGAGCAAGTCTT
TCGCTCAACGCTTGTGAGCAAGGAGATCTTTCTTTATCATTAATTTATGA
TCACGCCTACCCCATTATTGGGGGTAGGGGCGGCTTGTGTTGCCAATGCT
TGTGCGCCGAGACCAACCTTGTGTGCAGGGAACAAGTCGCCTTTGCTAAC
GATTGTGAGCAAAGTGGTCATAAATGTTATTTCGATCACTCCGACCCCAC
GATAGGGGGGAGGAGCGGCTTGTTCCACTAGCCATTGTTTGTGGGGAGCA
AGTCGCCTTTGCTCAAAACTTGTGAGCAAGAGGTCATTATTATTTCTATA
TTCTCGATCTCTCCTACCCCATGATTGGGGGTAGGAGCGACTCGCTCCGT
CAACGATTGTGTCGAGAGCAAGTTACCTTTGCCCAACGCTTGTGAGCAAG
GGGGTCGCTAATTATATGCTTTCTCGATCACTCCTACGCCATGATTGGGA
GTAGGAGCGGCTTGTTTCCCCAATGATAGTATGGGAAGAGCAAGTTGCCG
TTGCTCAAAGCTTGTGAGCAAGAGGTGATTCTGTAATGTTTTTTTTCAGT
CACTCCTACACCATGATTGGGGGTAGGAGTAGCGTGTCACAACATGATTA
GGTGTGGGGAGCAGTCGCCTTTGCACGAAACTTGCGAGCAAGGAGGCGTG
GCATATTGTTTTTGTTTACCACTCCCACCCCATCATTGGGGGAGGGGGTG
GAGAGCTCGTTCTGCCAATGCCACATGCGCCGACACCGGCGGTCCTCACC
TCACGCTATTTTGAAGCGGGGTGGGGGGGGGGGGGGGGATCTGGGCCTTG
GCACAAGAAATGATCGAGGTCGCACGAGCCACCTGGTGGGAGCTTCCTCG
TGCGCCATTGACGTCCAGGAACGCCACCACACTACCCTTCCGGTCACGAG
GAGCACAGGGGGGGAACCAAGTGGCCATCCCACCATTTCCCTGGACACCC
AGGTCTTCACCAAGCCCTGCGTCACGACGTCGCCACTTCTCTGGATTGCA
GAGCACCACTAGGCCACACGATCTTGGTCTGTGAGCTGGATATCACTGCC
CGCCACGCCAAGGTCACCCAAGCCCAGCACGTCGTCACGTGTCGCAGCCA
CACGTGTATGTCTTGCCCCCTCCCTCATATAATCCCCTCTTTGTCTCGCT
TCTTTTCATGCGACTGCTGTCACTCGCGTACAGGTTATGCTACTTCTGGA
CGCCATGATCCCAGCAAGCCCGACAAGCGGTATCTCGACGCCGCCACCGT
CGGTACACTGTGACCTTGCTATTTTTTACTTCCTTCTCACGGTTGTGTAT
TGTTGTGCCACTCTCATTTTCCCCTTTCATCCTCCTTGTGTCTTTATCAT
TTTTTGCGTGACAGATGGCACGCTTGCACAGGTCATATCGAGTCCTCTGC
GGTGCACACGGAGCCTACGAGAGGTGGTACTCTTGCATGAGTCATATCGG
GTCCTCTGCGGTACACAAGAAGACTGCAAGAGTTATGCGTAGATAGCTGA
ACCAACCCGCCGCAAACGCAACAGTCCTTCATCTTGTTTGACTTTTTCTA
TCTCGTTTGTTTTTGTTATGTAGCAATCCGTCACACTACCATAAAAAGCT
TCTTTTGAGGTCTACAGGTTTTCGTTTTGACATTCCAGTCGAAATGGAAT
GTTTATTCGAAGGAGCGCATATACTACTGAAATATTATGTTACAAACATT
CATCGTAACGTCTTTGAGGAATACCGTCTAACAAGACTTTACCTAGTTAG
TTTATGAGTACCTACCTCAAGGATCCACAGATAACAGCCTAGCGTCCTCT
ACAAGAAAATGAGGAGTACTCATATTTCGAAGTATAAGGGTAAGATTCAG
TCCATGCAATATCGGGGTCGTGGTTTCAGCGGCGCCATTTGCCCTTTGTC
GTTTTTCTTGTCTGACGTTGAAACGCACTGCAAGAGGGGTACGCATATTT
GAGGGTCTCCCGCGTGGTCTTATCACAGGAAGCAGTCACTTTTAAACAAA
AGCAAGCGCGTTGATGTCGAGGAGGTGAAGGGTTCATGTCAAGCTGACCC
TATCGTTACCACAGTCACCTGTTAAGCATACGGTTGCCTCCATCGACCCC
CCTCAAAGCTTCTAGCAGTTCGTCGAAAACGTACAGAACGACAAGCCGCT
CTTGGGAAAGCATCGGTGTTTTAGCCTCTCTGACAACCCCAGGTGTTTTT
TTTTTTTTAATTATGAATGAACGCGGTCGAACAGTGCCGGTAACCCAAGC
CCCAAGCTGCGGAAAACGGCGGACCCCATGCAAAACTGCCGCCCACCGAG
TATGACGCCGCACCTTGACCACAGTACTACTGAGGGGGGGCACGGAGTTA
GCTGGGGGGGATTGGGCGCGTTCACTGGGAACTACAGGAACTGTTCTCGA
CCGCGCTCAGCAGTCGCTAACCATTGACCCCCATCCTAAGTGGGAGGTAG
CAGGACGATCACATACTAGAACCAAACACTCGTGGTATTCTTAGATGTAA
GGGAGAGGTAGGAAGAGCAACGTATATCGACCGTTTCAGAATAACCGATC
CAAGATTGGGCAAAGTTCCCAGACGATGTAATTATACCGGTTTTGGCCAC
CCTTCGCGGTATGAAACCCCCCTCCTGTAACCTGCACGCCCAAAACACGG
CCACGACTCAGTAGCTTCAGCTCCAGCACTCCTACGTAAACGGCAATGTA
TGATGTCAGCAACATCCGTACCAGTGGCTTTACAGTAGCACATGCTAGGA
GACCAGGTCAAGGGGCTGTAATCACTGAAACGTCGGTAGCAACATGTACT
TCCCAATATATATATATATATTCATGCCATGTCCCAGCCAGTGAACGGAG
TGTGAGTGGCCCGCTTGCTGGATCAGACACACTACTGTAACCCTACAGTA
CCAACCGACACGATCTTTACAATCTGCTGTTTAGTTGTACTTGGCGTTTA
TCGCTAGACAACGTCGTTCGTAAGTCGCTACTCTCAAGAGAAGGGGTCAG
CAATGCGCACAGGGCACGACCTCAGGAGGAACTTCAACACGAAAGGCAGG
CCGGTAGCGGAGGTGGTTAATGGAGTTTTAAGTGTCACCGTTGATAGCTA
TGCACGATAGGACGTCCATCTCCTCTGTAGACGGTACCAAAGTATAGCTG
GATCTTTTTGGGAGTAAAGTTAGCTGGGCTATATAGCTTTACCACGTTGC
AGTTGATGGCGTATTTACCCACTATAGGCACCTGATATCATCCTCAGACG
AACGCGAACAAACCACCAACACTAAAACAACGACACCTAGCCCGCCCGCG
TAGCGTTGCCATCGGCGTGTTCTTGTTAGGTACACCCGCGTCTCTGGAGC
TTAGACGGAATATACATGGTAGGACAGGTGGACGACTACCGTACTTCACA
ACTGGAGGGTATGCTACCCCTTCAACAACTGGCCAAGAGCTGTCGCGACG
TCAATGGAAGCAGTTCGCTATGAAGGGAGTAACGGAATGAAGAGTTTGTG
GTGGACAACGTCTGGTCCGGCCACTACTGTCCTGTATATGATGTCCTTGT
TTAGGTTGTCACCACTCATTTCTGCGTTGATATGTCCCTCTCGCAATCAG
CTGGTAGTACCCAATCAATTTGTTTTGACCATTCCTCAGATCGTTTTACA
GAATGCAGCCAATGATACGTTATTGAACCTTATACTAAAACCAGCACTGA
ACCACTCCCCTCCCTGCCGCGATGCTCCCTACATATTTAAAAAATATGTT
GCATCAGGTATATCGAGCTGCGACGGGACGAGTTTAGATATCCATTTTTG
GAGATGGATATACAGGCATATTTGGTGGACCAAGACTACTGTACGACCCA
ACCCACTACACGGCACTTCGGCTTAGGCTGTCGTACTGCATTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10440:1294..7187+

>mRNA_D-dudresnayi_contig10440.478.1 ID=mRNA_D-dudresnayi_contig10440.478.1|Name=mRNA_D-dudresnayi_contig10440.478.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at D-dudresnayi_contig10440:1294..7187+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATCGGCAAGCACTGGGCGCTCAACAGCACAACATGTCAGTCTTTCGAACC
CAATGAACTGCATTCCTCACGATCGGCAAGCACTGGGCGCTCAACAGCAC
AACATGTCAGTCTTTCGAACCCAATGAACTGCATTCCTCACGGTCATATC
GAGTCCTCTGCGGTGCACACGGAGCCTACGAGAGGTGGTACTCTTGCATG
AGTCATATCGGGTCCTCTGCGGTACACAAGAAGACTGCAAGAGTCATATC
GAGTCCTCTGCGGTGCACACGGAGCCTACGAGAGGTGGTACTCTTGCATG
AGTCATATCGGGTCCTCTGCGGTACACAAGAAGACTGCAAGAGTATATCG
AGCTGCGACGGGACGAGTTTAGGTATATCGAGCTGCGACGGGACGAGTTT
AG
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