mRNA_D-dudresnayi_contig10436.472.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10436.472.1
Unique NamemRNA_D-dudresnayi_contig10436.472.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: D7G5L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L0_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 5.520e-49
Identity = 79/96 (82.29%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVLAGGVAFPTLFERTAAVIRGNSKLWADIESLGLLPPSVVDSVNRAAEE 288
            VWSFGAGQKGQLGHESTTREDFPRLV+ALK TRR+I+HVACGNNCTLVLAGGVAFPTLFE TA+V+RGN +LW D+ESLGLLPPSV+DS+NR   +
Sbjct:  574 VWSFGAGQKGQLGHESTTREDFPRLVQALKSTRREIMHVACGNNCTLVLAGGVAFPTLFEMTASVVRGNPRLWEDVESLGLLPPSVMDSLNRVVSD 669
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: A0A6H5JJV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV9_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 5.570e-48
Identity = 79/96 (82.29%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVLAGGVAFPTLFERTAAVIRGNSKLWADIESLGLLPPSVVDSVNRAAEE 288
            VWSFGAGQKGQLGHESTTREDFPRLV+ALK+TRR+I+HVACGNNCTLVLAGGVAFPTLFE TAAV+RGN +LW D+ SLGLLPPSV+DS+NR   +
Sbjct:  961 VWSFGAGQKGQLGHESTTREDFPRLVQALKRTRREIMHVACGNNCTLVLAGGVAFPTLFEMTAAVVRGNPRLWEDVGSLGLLPPSVMDSLNRVVSD 1056
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: A0A7S2FHZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHZ6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.810e-19
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVLAGGVAFPTLFERTAAVIRGNSKLWADIESLGLLPPSVVDSVNR 276
            V++FGAG KGQLGH     E FP L+  LKKTRRD+  VACGNNCTL+LAG    P+L +R   VIR    L    E+  + P  +VD + R
Sbjct:  653 VYTFGAGNKGQLGHGGLANEHFPALLTDLKKTRRDVHQVACGNNCTLILAGYFNPPSLLQRCTEVIRSTPALMESAENSDV-PADLVDQIRR 743
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: A0A7S2HV15_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV15_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.310e-18
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHEST-TREDFPRLVRALKKTRRDILHVACGNNCTLVLAGGVAFPTLFERTAAVIRGNSKLWADIESLGLLPPSVVDSVNRAAE 285
            V+SFGAG KGQLGH +    E+FPRLV  LK+TRR+I  VACGNNCT++LAG    P+LF+R   VIRG   L   +++  L P  ++  +  A +
Sbjct:  584 VFSFGAGNKGQLGHGTPLANENFPRLVIDLKRTRRNIHQVACGNNCTVILAGTFNPPSLFDRAIEVIRGTPGLMGSLDAANL-PGDLLTRIRNAPD 678
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: A0A7S2US50_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US50_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.760e-16
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVLAGGVAFPTLFERTAAVIRGNSKLWADIESLG 240
            V++FGAGQKGQLGH     + +P+LV +LK  RR +  V CGNNCTL+LAG  + P+L +    VI    +L + +E LG
Sbjct:   23 VYTFGAGQKGQLGHGDQHTQHYPKLVESLKAQRRIVHQVTCGNNCTLILAGKFSPPSLKQLCVEVIHATPELNSMVELLG 102
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: A0A4W3GJD1_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GJD1_CALMI)

HSP 1 Score: 50.8 bits (120), Expect = 8.840e-5
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVL 147
            +WS+G G+KGQLGH  T R + P+L+ ALK   + I+  ACG N +L L
Sbjct:   67 LWSWGRGEKGQLGHGDTKRGEVPKLIEALKD--QAIVAAACGRNHSLCL 113
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: V9KJP8_CALMI (Protein RCC2-like protein n=9 Tax=Chondrichthyes TaxID=7777 RepID=V9KJP8_CALMI)

HSP 1 Score: 50.8 bits (120), Expect = 9.210e-5
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVL 147
            +WS+G G+KGQLGH  T R + P+L+ ALK   + I+  ACG N +L L
Sbjct:  140 LWSWGRGEKGQLGHGDTKRGEVPKLIEALKD--QAIVAAACGRNHSLCL 186
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BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Match: A0A4W3GZ82_CALMI (Uncharacterized protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GZ82_CALMI)

HSP 1 Score: 50.8 bits (120), Expect = 9.220e-5
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVL 147
            +WS+G G+KGQLGH  T R + P+L+ ALK   + I+  ACG N +L L
Sbjct:  141 LWSWGRGEKGQLGHGDTKRGEVPKLIEALKD--QAIVAAACGRNHSLCL 187
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10436.472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G5L0_ECTSI5.520e-4982.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJV9_9PHAE5.570e-4882.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FHZ6_9STRA3.810e-1950.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2HV15_9STRA1.310e-1848.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2US50_9STRA1.760e-1647.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4W3GJD1_CALMI8.840e-548.98Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
V9KJP8_CALMI9.210e-548.98Protein RCC2-like protein n=9 Tax=Chondrichthyes T... [more]
A0A4W3GZ82_CALMI9.220e-548.98Uncharacterized protein n=2 Tax=Callorhinchus mili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10436contigD-dudresnayi_contig10436:7832..10243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue8.7e-42
Seed eggNOG ortholog2880.D7G5L0
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size388
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10436.472.1prot_D-dudresnayi_contig10436.472.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10436 7918..10243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927543.6408353-UTR-D-dudresnayi_contig10436:7831..79171622927543.6408353-UTR-D-dudresnayi_contig10436:7831..7917Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10436 7832..7917 -
1690556800.5214984-UTR-D-dudresnayi_contig10436:7831..79171690556800.5214984-UTR-D-dudresnayi_contig10436:7831..7917Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10436 7832..7917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927543.6543381-CDS-D-dudresnayi_contig10436:7917..79881622927543.6543381-CDS-D-dudresnayi_contig10436:7917..7988Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10436 7918..7988 -
1690556800.5320005-CDS-D-dudresnayi_contig10436:7917..79881690556800.5320005-CDS-D-dudresnayi_contig10436:7917..7988Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10436 7918..7988 -
1622927543.6706014-CDS-D-dudresnayi_contig10436:9220..93511622927543.6706014-CDS-D-dudresnayi_contig10436:9220..9351Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10436 9221..9351 -
1690556800.5445569-CDS-D-dudresnayi_contig10436:9220..93511690556800.5445569-CDS-D-dudresnayi_contig10436:9220..9351Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10436 9221..9351 -
1622927543.6836226-CDS-D-dudresnayi_contig10436:10145..102431622927543.6836226-CDS-D-dudresnayi_contig10436:10145..10243Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10436 10146..10243 -
1690556800.6113014-CDS-D-dudresnayi_contig10436:10145..102431690556800.6113014-CDS-D-dudresnayi_contig10436:10145..10243Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10436 10146..10243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10436.472.1

>prot_D-dudresnayi_contig10436.472.1 ID=prot_D-dudresnayi_contig10436.472.1|Name=mRNA_D-dudresnayi_contig10436.472.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=100bp
VWSFGAGQKGQLGHESTTREDFPRLVRALKKTRRDILHVACGNNCTLVLA
GGVAFPTLFERTAAVIRGNSKLWADIESLGLLPPSVVDSVNRAAEECDM*
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mRNA from alignment at D-dudresnayi_contig10436:7832..10243-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10436.472.1 ID=mRNA_D-dudresnayi_contig10436.472.1|Name=mRNA_D-dudresnayi_contig10436.472.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2412bp|location=Sequence derived from alignment at D-dudresnayi_contig10436:7832..10243- (Desmarestia dudresnayi DdudBR16 monoicous)
GTGTGGTCGTTCGGGGCCGGACAGAAGGGCCAGCTGGGGCACGAGTCCAC
CACCAGGGAAGACTTCCCCCGTCTCGTGCGAGCGCTCAAGAAAACCAGGT
CGGTCGCCGAACTTTACTTGCACTTCTTTGTTTTTTTTCTTGAAACGCTT
GGTAGGGTTTATGTGGTCTTGTCTCCCAAGCACCACGCGTACGGGCCGAG
TATATTTAGCACCCTGGTAGCTCAGATATTTTTAGAGAGATTTGACCTCA
CCTCTCTTGTTATTACAGTGTGTTCGTTAGGGTCAGTGATGAGATTTTCC
GAACTGCTCGAACCGCCCACGTTGTTACTAGTCATACAATACGACGAAAA
TCCTATCAAGATCTGAGCTACCCGAATTTTAGAGCAACTCTACGGGCCAG
TCCTTGTTTGTAGAATGCGTGGTACGCACATGTGTATCTACAACCATAAC
CATGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCTATTTTGC
ATGGTGCCCTTTTTTAATGACGTCCTCGCTATATTGCTAGACTTAACGAA
AGGAGGTCTGCACGGGTCCACGTATTGCATGCTTGGAGTAGACTGATGCG
TACGGATACAATTTTGGAAAAGCATGTTGTACAATCAAAACGGCCTTTTT
CTCAAACGCTGCCCTCTCCCTATCTGTTTGATGAAAAACACGTTTTTTTT
TTTGGGTACTCGTATAGTCTTGGAAAAGCATGCTGTACAACGAAATGGCC
TTTTCAAACGCTGCCCTCTCTCTTGGATGTATTTTTTTTTTTTTTTTAAA
TATCTCCGGCGCCTCCTTCTGGCCCAGTGTTTTGACCGCCGTGCCGTGAC
CCCCTCCCCCAAAATGAATTACTGCATGATTTACTCCTGCAGACGGGACA
TCCTTCACGTGGCGTGTGGCAACAATTGCACGCTCGTTCTAGCCGGAGGC
GTGGCCTTCCCTACGCTTTTCGAGCGCACCGCTGCTGTTATTCGAGGCAA
TTCCAAGCTGTGGGCGGACATCGGTGAGCTACCATATGACATTATTATTA
GTAGATTGAGGTGTAATATATAAATGATCGAGTGTAATAGTGCGGGCTTT
TTTGTTGGGTATACCCCCCCCCCCAAAAAAAAACAACTAAATGCTGTGAA
GGTGGGGGGGGGGGTCGCGATACGATGTTGTTGTTGTCAACCATTGTTGT
TGTCTTGGCATTAAATTTTTTTTCTACCCTACGCCATGTACAGTAGCATG
CTGGCACGTTAAATAAAGTATGCCAGGTGCGTACCGTAGAGTACACAGAG
ACAGGGGGGGGGGGGTACATATATGGTAGAGAGGGGAGGGAGGATGCTCA
CAGATTGTTTTTTTCGACGACCAAAAAAACTTGGACGCATTGATTGGCTT
GTGCTTAGATGGTCAGATTCGTGCATTGGTCGGTTAACGATTTCAGCGAC
CGATCCGCAGGAACGTACGATCTTTGACTGTAGTTTTTGTTGGGAGTAGG
CGAATGTATGTGTGTGCTTTCTGGTAGTGCTTGGGTCTCTATGATTGGAG
TGTAGCTCTTTATCTGCCATGGATGTTTTTCTTTGTGTACATTTCTGCTG
TCTTGTCAGATGTACCTCGCTCTTTGGCTTGGAACGTTGTTGGCTTGACG
CGGACACGCTTTAGTGGTTGCTAGTGGTTGATTTCGGACTGGTCGTTGTT
TGGTTGGGGAAAGAGCTGGTTTGAGCACGTGTTTGTTTTATTTTATTTTT
ATTTTCATACTTCGTATATTTTTTACGTTGTGCTGCGAAAGAAATGTATC
ATACGTCAGCACCGTCATGTTCACTGCTGTGCAATACTCTGGTGGCACGT
ATTGCGCCTGCCCCTCAGATATCTAGTCTGTCGACGAGATTATTGGTTTG
TTCGGTGTGTGGATGGTTGGACGATGTTGGTGGTGGTGGTGGTGGTGGGC
GGTTCTGGTAAAAGTCCGTTGCCTCTTCCAGCGGTCGGCCTGACCCCAAT
TTCTGTTTCAGGACATCAAACGCACCATCGTGTTGTCCCTCCCTTCCGAA
ATCCCCATGGTTGCATGTTTCAACCTTCGACCAATTTGTAGCGTCCAATG
TCTCGATTGCCGACAACGCGCCCGGCTCATCGACAATTCCTCACACTCCT
CCTCCCCCCCCCCCTCCCCTCCTTTGCCATGTTTTTGTTTTGCTCGCGAT
CCCGCTAACCTAACCCTTGCGTCAAATCTGGGTGCCATATATGCTACGTA
CATAGAGTCGTTGGGGCTCCTTCCGCCGAGCGTGGTCGATTCCGTTAACC
GAGCTGCTGAAGAGTGTGACATGTAACGACACGCTAGCTCCTGGCGGGCA
AGATCTTCTTTTTTGGACGCGCATAGAGATGAGCGTTCAGGCGCGAGAGA
TCGAAGCGCACG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10436:7832..10243-

>mRNA_D-dudresnayi_contig10436.472.1 ID=mRNA_D-dudresnayi_contig10436.472.1|Name=mRNA_D-dudresnayi_contig10436.472.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at D-dudresnayi_contig10436:7832..10243- (Desmarestia dudresnayi DdudBR16 monoicous)
GTGTGGTCGTTCGGGGCCGGACAGAAGGGCCAGCTGGGGCACGAGTCCAC
CACCAGGGAAGACTTCCCCCGTCTCGTGCGAGCGCTCAAGAAAACCAGGT
GTGGTCGTTCGGGGCCGGACAGAAGGGCCAGCTGGGGCACGAGTCCACCA
CCAGGGAAGACTTCCCCCGTCTCGTGCGAGCGCTCAAGAAAACCAGACGG
GACATCCTTCACGTGGCGTGTGGCAACAATTGCACGCTCGTTCTAGCCGG
AGGCGTGGCCTTCCCTACGCTTTTCGAGCGCACCGCTGCTGTTATTCGAG
GCAATTCCAAGCTGTGGGCGGACATCGACGGGACATCCTTCACGTGGCGT
GTGGCAACAATTGCACGCTCGTTCTAGCCGGAGGCGTGGCCTTCCCTACG
CTTTTCGAGCGCACCGCTGCTGTTATTCGAGGCAATTCCAAGCTGTGGGC
GGACATCGAGTCGTTGGGGCTCCTTCCGCCGAGCGTGGTCGATTCCGTTA
ACCGAGCTGCTGAAGAGTGTGACATGTAAAGTCGTTGGGGCTCCTTCCGC
CGAGCGTGGTCGATTCCGTTAACCGAGCTGCTGAAGAGTGTGACATGTAA
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