mRNA_D-dudresnayi_contig10425.462.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10425.462.1
Unique NamemRNA_D-dudresnayi_contig10425.462.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10425.462.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 9.910e-74
Identity = 126/145 (86.90%), Postives = 132/145 (91.03%), Query Frame = 1 
Query:  373 PDMASLSSENPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRQMVDDDHGGGLQPDAVTYTSLIKAAARAAPPRVKEAEEIFATMQQRTNHFSTFARPTEVTYAHLMNASIMAGDFNRALEVWRRQLS 807
            P   S  + NPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVR MVDD  GGGLQPDAVTYTSLIKAAARA PPRV+EAEEIFATMQQRTNHFSTFARPTEVTYAHLM AS+MA D+ RALE+WR+QLS
Sbjct:  860 PSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLS 1004
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BLAST of mRNA_D-dudresnayi_contig10425.462.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.340e-38
Identity = 77/142 (54.23%), Postives = 105/142 (73.94%), Query Frame = 1 
Query:  382 ASLSSENPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRQMVDDDHGGGLQPDAVTYTSLIKAAARAAPPRVKEAEEIFATMQQRTNHFSTFARPTEVTYAHLMNASIMAGDFNRALEVWRRQLS 807
            + ++  +PA DNLFRVFLVF EM+S+GV+PD  AYNAL+N+CA +G+ +RA+ V+RQM +D+H   L PDA+T+TSLIK AA A       AEEIFA MQQRTNHFSTF RP+E T+ H++ A++    F+R  E+W + L+
Sbjct:  648 SQMTHSDPAADNLFRVFLVFGEMKSQGVQPDRPAYNALINSCAAVGDLERAMAVLRQMYEDEHC--LPPDAITFTSLIKTAAAA--HNADAAEEIFAAMQQRTNHFSTFHRPSERTFRHMITANMNIKRFSRVQELWAQMLA 785
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BLAST of mRNA_D-dudresnayi_contig10425.462.1 vs. uniprot
Match: A0A7S0XEC2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEC2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.660e-20
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:  412 DNLFRVFLVFQEMR-SRGVRPDLRAYNALVNTCADLGEFDRALGVVRQMVDDDHGGGLQPDAVTYTSLIKAAA-RAAPPRVKEAEEIFATMQQRTNHFSTFARPTEVTYAHLM 744
            D+LFR++LVFQEM+ +  ++ D   YN L+N CA +G+ DRAL  +  M ++    G++P+ +TYTSLIKA A  +    ++ AE IF  MQQR+NHFS + +P E+TY  LM
Sbjct:  173 DDLFRLYLVFQEMKYNPAIQLDTAVYNTLINACAGVGDIDRALETMTAMQEN----GIEPNVITYTSLIKACAFNSRNEMIELAENIFNEMQQRSNHFSNYIQPNEMTYEKLM 281
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BLAST of mRNA_D-dudresnayi_contig10425.462.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC)

HSP 1 Score: 72.4 bits (176), Expect = 1.070e-10
Identity = 46/136 (33.82%), Postives = 65/136 (47.79%), Query Frame = 1 
Query:  385 SLSSENPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRQMVDDDHGGGLQPDAVTYTSLIKAAARAAPPRVKEAEEIFATMQQRTNHFSTFARPTEVTYAHLMNASIMAGDFNRALEVW 792
            SL  ++   +NLFR+FLVFQEM+S GV+PDL AYN L++ C   GE ++A+ V                                     A      MQQRTNHF++   P+E+T+  LM A+  A    R  E++
Sbjct:  633 SLEEQHYYRENLFRIFLVFQEMQSSGVQPDLCAYNTLLDACGRAGEVEKAMEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA------MQQRTNHFASCVLPSELTFKQLMLANRNAYRLRRVFELF 762
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BLAST of mRNA_D-dudresnayi_contig10425.462.1 vs. uniprot
Match: A0A7S2E620_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E620_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.380e-9
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:  367 FPPDMASLSSENPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRQMVDDDHGGGLQPDAVTYTSLIKAAAR 630
            F  D+A++   N A   L +VFLVFQEMR  G +PD   YN L+  CA  G+F RA  V+ +++D D    L+P  V++  +++AA+R
Sbjct:  743 FSRDIANI---NDAKTLLVKVFLVFQEMRDAGAKPDTACYNVLLGACARAGDFTRARDVLNKLMDSDD---LEPTHVSWREMLRAASR 824
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10425.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI9.910e-7486.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEM1_9STRA1.340e-3854.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XEC2_9STRA1.660e-2046.02Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A0G4F8K7_VITBC1.070e-1033.82Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2E620_9STRA5.380e-940.91Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10425contigD-dudresnayi_contig10425:4965..7062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue7.9e-66
Seed eggNOG ortholog2880.D8LSJ6
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-09_001880.1
Exons2
Model size808
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.3630705-CDS-D-dudresnayi_contig10425:4965..51091622927542.3630705-CDS-D-dudresnayi_contig10425:4965..5109Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 4966..5109 -
1690556800.1053932-CDS-D-dudresnayi_contig10425:4965..51091690556800.1053932-CDS-D-dudresnayi_contig10425:4965..5109Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 4966..5109 -
1622927542.3776882-CDS-D-dudresnayi_contig10425:6399..70621622927542.3776882-CDS-D-dudresnayi_contig10425:6399..7062Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 6400..7062 -
1690556800.114504-CDS-D-dudresnayi_contig10425:6399..70621690556800.114504-CDS-D-dudresnayi_contig10425:6399..7062Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 6400..7062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10425.462.1prot_D-dudresnayi_contig10425.462.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10425 4966..7062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10425.462.1

>prot_D-dudresnayi_contig10425.462.1 ID=prot_D-dudresnayi_contig10425.462.1|Name=mRNA_D-dudresnayi_contig10425.462.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=269bp
RVVGPSVDDLDVAEQSGGIGGGDEGRVPSGVAAASTQGKDDFSLTEVGRL
GDYQAGPVSPAPSSSSTLPPELEVTMEETSAGRRTVVAADPPTVASAPFA
FAPSSSSSGSPSSTSPPPSSPLFPPDMASLSSENPALDNLFRVFLVFQEM
RSRGVRPDLRAYNALVNTCADLGEFDRALGVVRQMVDDDHGGGLQPDAVT
YTSLIKAAARAAPPRVKEAEEIFATMQQRTNHFSTFARPTEVTYAHLMNA
SIMAGDFNRALEVWRRQLS
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mRNA from alignment at D-dudresnayi_contig10425:4965..7062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10425.462.1 ID=mRNA_D-dudresnayi_contig10425.462.1|Name=mRNA_D-dudresnayi_contig10425.462.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2098bp|location=Sequence derived from alignment at D-dudresnayi_contig10425:4965..7062- (Desmarestia dudresnayi DdudBR16 monoicous)
CGGGTAGTAGGGCCAAGTGTTGATGATTTGGATGTGGCGGAGCAGAGTGG
TGGTATTGGTGGTGGTGATGAGGGGCGGGTGCCCTCGGGGGTAGCGGCGG
CTTCGACGCAAGGCAAAGATGATTTCTCGTTGACGGAAGTGGGACGGTTG
GGGGATTACCAAGCGGGGCCCGTGTCGCCTGCACCCTCGTCCTCCTCGAC
GCTGCCACCTGAGCTGGAAGTCACCATGGAGGAAACATCAGCAGGGCGAA
GGACTGTTGTTGCGGCCGACCCACCCACCGTCGCCTCGGCCCCCTTTGCG
TTCGCGCCTTCTTCTTCCTCCTCGGGCTCACCGTCGTCGACATCACCGCC
ACCGTCCAGCCCCCTTTTCCCGCCTGACATGGCCTCCTTATCCTCGGAAA
ACCCTGCCCTGGATAACCTGTTTCGAGTTTTTTTGGTGTTTCAGGAGATG
CGTTCGAGGGGGGTGAGGCCGGACCTGCGAGCCTACAACGCGCTCGTGAA
CACTTGCGCCGATCTGGGGGAGTTTGATCGGGCGCTGGGGGTAGTGAGGC
AGATGGTGGACGATGATCACGGGGGCGGGTTACAGCCGGACGCGGTGACG
TACACGAGCCTGATCAAGGCCGCGGCGAGGGCGGCCCCGCCCAGGGTGAA
AGAGGCAGAAGAGGTGTGCGCGCGGGGGGTGGGGGGGTGCAGTGTGCAAG
TGTGCGGACAACATGGGCAGTATTGCAGCGTGCATGCAAACAGTAGTGTG
TGACACATTTTCTTTTCGTTTTTGTTGCCTTTTGCAGGTTTGGCCGACCA
GAAATATGCTGTGCGGTGCGCAAAACGACGAGCCGATAATTAGTGGCCCG
TGGCCGGCAACTGCTTATTGCATCAACTTTCTGGGCCTCCTGTCCCCCCT
CCGTCCTCCTCCTCCCTACGTTGGCACGAGCAGGGTCCTCCCCGTTCCTG
CGCCTGTTATGTTGTTTTTCCTGCCGAGTAAACGGCAATAGGGTCAATTG
TACTTTTTTGTATCGGTAATGCCAGATGCGTCGACCGTTTGGCAGTTATC
GTACTCGTATACTAGAAAGAAAGCACCATGTATGAAGTATTGCAGAAGCA
TGCATGCCTATCTGTGTGCTGCTTGGTATGTTGTTTATACGGCAATGATG
CCCTCGTGGTGGCTTAAATCCTACGCGGGTTTCATACGTGAATCCTGTTC
GTGCCGTATTAAGATGGCGCAACAACAGTGGCAGACGCTCTGCGGCGCCG
CACCGGTATTGATATATGCCCTCTTGCGGGCCGTCCGTATGTACTTGTAT
CATAAGCCCATTCCGACGAAAAATATCTGGCTTACAGTACAGGACGCCTA
CTTGATATCATGACAAGAATCAGGAACCCTGGGCTCAGGCCGTATTTGTT
ACTATCGACACGATAGGGCAAGGATGTGCCCTACACTATCTTCAGTATAA
TAGAGCCGTGTCGAAATTTCTTGTTTTATTTCGATGAATACCAGGCTGGG
TTCCTTATCAAGCTGTTTTCTTACTGTTATAATTACTAGGGAGAAGGATT
ATCCTACACGAACTTTCAGTATAATACAACCGTGTCAGGATTTCTTATTT
TCTATCTAAATCTCAACCTGCTTGGTGTCTTATCATCAATCTGTTTCTTG
TTTCTTACGACTATTGTAGGTGTCTGGTACTGTGTGCGGTTTCTAGCGTG
TTTTGCACTGGGCATGGGAGTATCAATGGTCATTCAATGGTCGTTGGCTT
ATGGCGTGTGTGTAATTACTGTACAATTATGTGTTCCACCCCCCCCAATT
ATTGGAGGTGTCTCTAATAGGAGTACGAACGATGCTCCGTCTTGAAAGGG
GTGCGTGGTGAAATGACAAAGTCAAGCAACAAATGAGTACCCGCCCGACC
TCCCCCCGCTTCCCTGGCCGCATCAAAATCGAAACCCCATCATTCATACG
CAGATTTTCGCGACGATGCAGCAAAGAACGAACCACTTTTCGACCTTCGC
GAGACCCACCGAGGTCACCTACGCGCACCTCATGAACGCGTCGATTATGG
CCGGCGACTTTAACCGCGCCTTGGAGGTGTGGAGGCGGCAGCTTTCGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10425:4965..7062-

>mRNA_D-dudresnayi_contig10425.462.1 ID=mRNA_D-dudresnayi_contig10425.462.1|Name=mRNA_D-dudresnayi_contig10425.462.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at D-dudresnayi_contig10425:4965..7062- (Desmarestia dudresnayi DdudBR16 monoicous)
CGGGTAGTAGGGCCAAGTGTTGATGATTTGGATGTGGCGGAGCAGAGTGG
TGGTATTGGTGGTGGTGATGAGGGGCGGGTGCCCTCGGGGGTAGCGGCGG
CTTCGACGCAAGGCAAAGATGATTTCTCGTTGACGGAAGTGGGACGGTTG
GGGGATTACCAAGCGGGGCCCGTGTCGCCTGCACCCTCGTCCTCCTCGAC
GCTGCCACCTGAGCTGGAAGTCACCATGGAGGAAACATCAGCAGGGCGAA
GGACTGTTGTTGCGGCCGACCCACCCACCGTCGCCTCGGCCCCCTTTGCG
TTCGCGCCTTCTTCTTCCTCCTCGGGCTCACCGTCGTCGACATCACCGCC
ACCGTCCAGCCCCCTTTTCCCGCCTGACATGGCCTCCTTATCCTCGGAAA
ACCCTGCCCTGGATAACCTGTTTCGAGTTTTTTTGGTGTTTCAGGAGATG
CGTTCGAGGGGGGTGAGGCCGGACCTGCGAGCCTACAACGCGCTCGTGAA
CACTTGCGCCGATCTGGGGGAGTTTGATCGGGCGCTGGGGGTAGTGAGGC
AGATGGTGGACGATGATCACGGGGGCGGGTTACAGCCGGACGCGGTGACG
TACACGAGCCTGATCAAGGCCGCGGCGAGGGCGGCCCCGCCCAGGGTGAA
AGAGGCAGAAGAGCGGGTAGTAGGGCCAAGTGTTGATGATTTGGATGTGG
CGGAGCAGAGTGGTGGTATTGGTGGTGGTGATGAGGGGCGGGTGCCCTCG
GGGGTAGCGGCGGCTTCGACGCAAGGCAAAGATGATTTCTCGTTGACGGA
AGTGGGACGGTTGGGGGATTACCAAGCGGGGCCCGTGTCGCCTGCACCCT
CGTCCTCCTCGACGCTGCCACCTGAGCTGGAAGTCACCATGGAGGAAACA
TCAGCAGGGCGAAGGACTGTTGTTGCGGCCGACCCACCCACCGTCGCCTC
GGCCCCCTTTGCGTTCGCGCCTTCTTCTTCCTCCTCGGGCTCACCGTCGT
CGACATCACCGCCACCGTCCAGCCCCCTTTTCCCGCCTGACATGGCCTCC
TTATCCTCGGAAAACCCTGCCCTGGATAACCTGTTTCGAGTTTTTTTGGT
GTTTCAGGAGATGCGTTCGAGGGGGGTGAGGCCGGACCTGCGAGCCTACA
ACGCGCTCGTGAACACTTGCGCCGATCTGGGGGAGTTTGATCGGGCGCTG
GGGGTAGTGAGGCAGATGGTGGACGATGATCACGGGGGCGGGTTACAGCC
GGACGCGGTGACGTACACGAGCCTGATCAAGGCCGCGGCGAGGGCGGCCC
CGCCCAGGGTGAAAGAGGCAGAAGAGATTTTCGCGACGATGCAGCAAAGA
ACGAACCACTTTTCGACCTTCGCGAGACCCACCGAGGTCACCTACGCGCA
CCTCATGAACGCGTCGATTATGGCCGGCGACTTTAACCGCGCCTTGGAGG
TGTGGAGGCGGCAGCTTTCGATTTTCGCGACGATGCAGCAAAGAACGAAC
CACTTTTCGACCTTCGCGAGACCCACCGAGGTCACCTACGCGCACCTCAT
GAACGCGTCGATTATGGCCGGCGACTTTAACCGCGCCTTGGAGGTGTGGA
GGCGGCAGCTTTCG
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