mRNA_D-dudresnayi_contig10419.453.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10419.453.1
Unique NamemRNA_D-dudresnayi_contig10419.453.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10419.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10419contigD-dudresnayi_contig10419:5355..5747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size395
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.2731209-CDS-D-dudresnayi_contig10419:5354..57471622927541.2731209-CDS-D-dudresnayi_contig10419:5354..5747Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 5355..5747 +
1690556799.6920764-CDS-D-dudresnayi_contig10419:5354..57471690556799.6920764-CDS-D-dudresnayi_contig10419:5354..5747Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10419 5355..5747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10419.453.1prot_D-dudresnayi_contig10419.453.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10419 5355..5747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10419.453.1

>prot_D-dudresnayi_contig10419.453.1 ID=prot_D-dudresnayi_contig10419.453.1|Name=mRNA_D-dudresnayi_contig10419.453.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=131bp
PSARHAAANKAVASSRRSSIYYFGVFYSAVNAVLHGRRFLSAHAILFLCY
GVTLRPLYGIGCPATIDFLRAPVVFTFFFPGGDGLPGLQYGGDFRIPEIV
YRGLHRTLTYSACSRCNKAVRIFFARGYWR*
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mRNA from alignment at D-dudresnayi_contig10419:5355..5747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10419.453.1 ID=mRNA_D-dudresnayi_contig10419.453.1|Name=mRNA_D-dudresnayi_contig10419.453.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at D-dudresnayi_contig10419:5355..5747+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCTTCTGCGCGCCACGCAGCCGCAAACAAGGCCGTCGCCTCTAGCCGAAG
AAGCTCGATCTACTATTTCGGGGTGTTCTACTCTGCAGTAAACGCAGTTC
TCCACGGCCGCCGCTTCCTCTCCGCACACGCGATCCTGTTTCTCTGCTAC
GGAGTTACACTCCGCCCACTGTACGGAATCGGCTGCCCTGCGACCATCGA
CTTCCTCCGCGCTCCAGTCGTCTTCACCTTCTTCTTCCCTGGCGGTGATG
GCCTCCCAGGCCTTCAATACGGAGGTGACTTCCGGATCCCCGAAATCGTC
TATCGCGGCCTCCATCGCACCCTGACCTACAGCGCCTGCAGTCGTTGCAA
CAAGGCCGTCCGTATCTTCTTCGCGCGTGGCTACTGGCGGTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10419:5355..5747+

>mRNA_D-dudresnayi_contig10419.453.1 ID=mRNA_D-dudresnayi_contig10419.453.1|Name=mRNA_D-dudresnayi_contig10419.453.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at D-dudresnayi_contig10419:5355..5747+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCTTCTGCGCGCCACGCAGCCGCAAACAAGGCCGTCGCCTCTAGCCGAAG
AAGCTCGATCTACTATTTCGGGGTGTTCTACTCTGCAGTAAACGCAGTTC
TCCACGGCCGCCGCTTCCTCTCCGCACACGCGATCCTGTTTCTCTGCTAC
GGAGTTACACTCCGCCCACTGTACGGAATCGGCTGCCCTGCGACCATCGA
CTTCCTCCGCGCTCCAGTCGTCTTCACCTTCTTCTTCCCTGGCGGTGATG
GCCTCCCAGGCCTTCAATACGGAGGTGACTTCCGGATCCCCGAAATCGTC
TATCGCGGCCTCCATCGCACCCTGACCTACAGCGCCTGCAGTCGTTGCAA
CAAGGCCGTCCGTATCTTCTTCGCGCGTGGCTACTGGCGGTGACCTTCTG
CGCGCCACGCAGCCGCAAACAAGGCCGTCGCCTCTAGCCGAAGAAGCTCG
ATCTACTATTTCGGGGTGTTCTACTCTGCAGTAAACGCAGTTCTCCACGG
CCGCCGCTTCCTCTCCGCACACGCGATCCTGTTTCTCTGCTACGGAGTTA
CACTCCGCCCACTGTACGGAATCGGCTGCCCTGCGACCATCGACTTCCTC
CGCGCTCCAGTCGTCTTCACCTTCTTCTTCCCTGGCGGTGATGGCCTCCC
AGGCCTTCAATACGGAGGTGACTTCCGGATCCCCGAAATCGTCTATCGCG
GCCTCCATCGCACCCTGACCTACAGCGCCTGCAGTCGTTGCAACAAGGCC
GTCCGTATCTTCTTCGCGCGTGGCTACTGGCGGTGA
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